Wall clock time and date at job start Tue Mar 31 2020 03:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00164 * 2 1 4 4 H 1.08999 * 110.77719 * 26.75933 * 3 2 1 5 5 C 1.54332 * 110.71848 * 263.52266 * 3 2 1 6 6 N 1.47025 * 107.27020 * 219.44424 * 5 3 2 7 7 C 1.36931 * 125.64613 * 178.90202 * 6 5 3 8 8 H 1.07997 * 119.99838 * 180.02562 * 7 6 5 9 9 C 1.38810 * 120.00228 * 0.02730 * 7 6 5 10 10 N 1.31612 * 119.99986 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99936 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47236 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47316 * 119.99785 * 11 9 7 14 14 H 1.48507 * 109.46919 * 239.99760 * 11 9 7 15 15 C 1.47470 * 108.72173 * 358.97320 * 6 5 3 16 16 C 1.54913 * 104.80994 * 24.07395 * 15 6 5 17 17 H 1.08996 * 111.00725 * 81.13531 * 16 15 6 18 18 N 1.46504 * 111.00066 * 204.94797 * 16 15 6 19 19 C 1.34777 * 119.99854 * 270.41323 * 18 16 15 20 20 O 1.21603 * 119.99960 * 0.02562 * 19 18 16 21 21 C 1.47523 * 120.00283 * 180.27861 * 19 18 16 22 22 C 1.36594 * 125.77370 * 179.44646 * 21 19 18 23 23 N 1.34818 * 106.84030 * 179.83777 * 22 21 19 24 24 C 1.46497 * 126.59732 * 180.16957 * 23 22 21 25 25 N 1.40210 * 106.80896 * 0.41429 * 23 22 21 26 26 N 1.28770 * 108.36694 * 359.73505 * 25 23 22 27 27 H 1.09007 * 109.47074 * 300.00417 * 1 2 3 28 28 H 1.09006 * 109.47265 * 59.99640 * 1 2 3 29 29 H 1.08998 * 109.47351 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.88074 * 338.85980 * 5 3 2 31 31 H 1.09002 * 109.87912 * 100.02492 * 5 3 2 32 32 H 0.97000 * 120.00105 * 179.97438 * 10 9 7 33 33 H 1.08997 * 110.35272 * 265.25581 * 15 6 5 34 34 H 1.09006 * 110.40321 * 142.91455 * 15 6 5 35 35 H 0.96990 * 120.00418 * 90.42045 * 18 16 15 36 36 H 1.08001 * 126.58069 * 359.97438 * 22 21 19 37 37 H 1.09000 * 109.47167 * 270.31436 * 24 23 22 38 38 H 1.09003 * 109.46717 * 30.31589 * 24 23 22 39 39 H 1.09000 * 109.46815 * 150.31231 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3362 2.0288 0.4588 5 6 2.3811 1.7380 -1.4343 6 7 3.6686 2.4438 -1.3582 7 6 4.3547 2.9689 -2.4205 8 1 5.2973 3.4710 -2.2595 9 6 3.8389 2.8561 -3.7042 10 7 2.6905 2.2439 -3.9005 11 14 4.7754 3.5719 -5.1534 12 1 6.0293 4.2033 -4.6693 13 1 5.1050 2.4882 -6.1137 14 1 3.9360 4.5937 -5.8291 15 6 4.0998 2.4913 0.0512 16 6 3.3817 1.2957 0.7255 17 1 3.9155 0.3638 0.5395 18 7 3.2168 1.5251 2.1631 19 6 4.1768 1.1307 3.0228 20 8 5.1800 0.5847 2.6053 21 6 4.0082 1.3561 4.4710 22 6 4.8968 0.9963 5.4439 23 7 4.3658 1.3847 6.6208 24 6 4.9631 1.2131 7.9474 25 7 3.1295 1.9793 6.3313 26 7 2.9515 1.9452 5.0564 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 2.4768 0.8601 -2.0731 31 1 1.6153 2.4052 -1.8299 32 1 2.3298 2.1653 -4.7975 33 1 3.7888 3.4291 0.5114 34 1 5.1811 2.3732 0.1220 35 1 2.4168 1.9608 2.4961 36 1 5.8440 0.4984 5.2983 37 1 4.6509 0.2560 8.3654 38 1 6.0496 1.2354 7.8623 39 1 4.6332 2.0202 8.6015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081617023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:12 Heat of formation + Delta-G solvation = 56.742770 kcal Electronic energy + Delta-G solvation = -23714.707744 eV Core-core repulsion = 20082.308690 eV Total energy + Delta-G solvation = -3632.399053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.35515 -39.46820 -37.98727 -35.84132 -34.93872 -33.95587 -31.79746 -31.05819 -28.85848 -28.17870 -27.01206 -26.04816 -24.50001 -23.30508 -22.41581 -20.77865 -20.44006 -19.92242 -18.29732 -17.00281 -16.51338 -16.43930 -16.14081 -15.53138 -14.97576 -14.74499 -14.62747 -14.39931 -14.17997 -13.93646 -13.56539 -13.49106 -13.18190 -12.71106 -12.33099 -12.21131 -11.83276 -11.53704 -11.47425 -11.16937 -10.96493 -10.79202 -10.70082 -10.63546 -10.13912 -9.99138 -9.90744 -9.74887 -9.47308 -9.06737 -8.71244 -8.53507 -6.84415 -5.69359 -3.04168 0.93397 1.63412 1.79199 3.25998 3.38520 3.43281 3.48760 3.51321 4.06889 4.09016 4.19876 4.53489 4.54836 4.61888 4.81115 4.84233 5.12837 5.19112 5.46486 5.53132 5.59842 5.65387 5.70524 5.77688 5.91167 5.98534 6.06967 6.10760 6.22432 6.56625 6.67016 6.89771 7.31056 7.52585 7.59698 7.76116 7.85039 7.91978 8.23969 8.36628 9.21582 9.81623 10.45086 11.42118 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.003558 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.898003 B = 7866.636531 C = 8737.141837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.065 0.935 5 C 0.165 3.835 6 N -0.601 5.601 7 C -0.227 4.227 8 H 0.081 0.919 9 C -0.008 4.008 10 N -0.922 5.922 11 Si 0.914 3.086 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 C 0.130 3.870 16 C 0.132 3.868 17 H 0.108 0.892 18 N -0.699 5.699 19 C 0.603 3.397 20 O -0.536 6.536 21 C -0.094 4.094 22 C 0.092 3.908 23 N -0.367 5.367 24 C 0.088 3.912 25 N -0.069 5.069 26 N -0.204 5.204 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.252 0.748 33 H 0.025 0.975 34 H 0.052 0.948 35 H 0.404 0.596 36 H 0.206 0.794 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.622 -3.324 22.248 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.083 0.917 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.355 4.355 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.003 3.997 16 C 0.027 3.973 17 H 0.126 0.874 18 N -0.348 5.348 19 C 0.386 3.614 20 O -0.412 6.412 21 C -0.234 4.234 22 C -0.065 4.065 23 N -0.152 5.152 24 C -0.053 4.053 25 N -0.050 5.050 26 N -0.078 5.078 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.239 0.761 36 H 0.223 0.777 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.209 -3.195 22.331 22.560 hybrid contribution 0.708 0.287 -0.790 1.099 sum 0.917 -2.908 21.541 21.756 Atomic orbital electron populations 1.22713 0.81720 1.02025 0.99814 1.87900 1.19115 1.27536 1.95042 1.23846 0.92903 0.84165 0.99422 0.91723 1.21564 0.88220 0.97261 0.88959 1.44276 1.21378 1.66512 1.00670 1.19125 1.02285 1.29386 0.84668 0.90080 1.24817 0.97445 1.00775 0.97391 1.69948 1.19212 1.47312 1.20484 0.86007 0.78804 0.78174 0.82553 1.20447 1.21708 1.21795 1.21847 0.97809 0.93865 0.86190 1.22465 0.96681 1.01148 0.76988 0.87428 1.45733 1.21776 1.60206 1.07068 1.16717 0.83383 0.78481 0.82777 1.90828 1.28933 1.43479 1.77980 1.21595 0.94569 1.10862 0.96358 1.23395 1.00650 0.98104 0.84349 1.50365 1.16089 1.40797 1.07948 1.22183 0.99136 1.04691 0.79264 1.81990 0.97157 1.17755 1.08061 1.74631 1.20812 1.11672 1.00676 0.94729 0.93643 0.90284 0.91893 0.93305 0.93736 0.95770 0.93017 0.76092 0.77717 0.89256 0.88369 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.60 16 2 O -0.38 -7.20 10.43 -35.23 -0.37 -7.57 16 3 C 0.06 1.09 3.08 -24.89 -0.08 1.02 16 4 H 0.06 1.14 7.68 -51.93 -0.40 0.74 16 5 C 0.17 4.09 5.15 -3.06 -0.02 4.07 16 6 N -0.60 -15.71 3.40 -170.03 -0.58 -16.28 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 10 N -0.92 -27.23 10.31 55.49 0.57 -26.66 16 11 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 15 C 0.13 2.86 6.93 -2.50 -0.02 2.84 16 16 C 0.13 2.58 3.09 -65.78 -0.20 2.37 16 17 H 0.11 2.33 7.63 -51.93 -0.40 1.93 16 18 N -0.70 -11.43 5.21 -52.77 -0.27 -11.70 16 19 C 0.60 9.82 7.82 -12.48 -0.10 9.73 16 20 O -0.54 -10.13 16.56 5.27 0.09 -10.05 16 21 C -0.09 -1.27 6.99 -83.55 -0.58 -1.86 16 22 C 0.09 0.90 11.31 -16.83 -0.19 0.71 16 23 N -0.37 -3.19 4.03 -67.85 -0.27 -3.47 16 24 C 0.09 0.27 11.51 59.85 0.69 0.96 16 25 N -0.07 -0.85 13.78 60.35 0.83 -0.02 16 26 N -0.20 -2.84 12.04 32.85 0.40 -2.44 16 27 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.76 7.29 -51.93 -0.38 1.38 16 31 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 5.91 8.22 -40.82 -0.34 5.57 16 36 H 0.21 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -35.42 336.78 -4.45 -39.87 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.25 Total: 1.36 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 0.35 Total: 14.55 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.67 Total: -60.58 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.28 Total: -17.62 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.42 -4.45 -39.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081617023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.613 kcal (2) G-P(sol) polarization free energy of solvation -35.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds