Wall clock time and date at job start Tue Mar 31 2020 03:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00164 * 2 1 4 4 H 1.08999 * 110.77719 * 26.75933 * 3 2 1 5 5 C 1.54332 * 110.71848 * 263.52266 * 3 2 1 6 6 N 1.47025 * 107.27020 * 219.44424 * 5 3 2 7 7 C 1.36931 * 125.64613 * 178.90202 * 6 5 3 8 8 H 1.07997 * 119.99838 * 180.02562 * 7 6 5 9 9 C 1.38810 * 120.00228 * 0.02730 * 7 6 5 10 10 N 1.31612 * 119.99986 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99936 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47236 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47316 * 119.99785 * 11 9 7 14 14 H 1.48507 * 109.46919 * 239.99760 * 11 9 7 15 15 C 1.47470 * 108.72173 * 358.97320 * 6 5 3 16 16 C 1.54913 * 104.80994 * 24.07395 * 15 6 5 17 17 H 1.08996 * 111.00725 * 81.13531 * 16 15 6 18 18 N 1.46504 * 111.00066 * 204.94797 * 16 15 6 19 19 C 1.34777 * 119.99854 * 270.41323 * 18 16 15 20 20 O 1.21603 * 119.99960 * 0.02562 * 19 18 16 21 21 C 1.47523 * 120.00283 * 180.27861 * 19 18 16 22 22 C 1.36594 * 125.77370 * 179.44646 * 21 19 18 23 23 N 1.34818 * 106.84030 * 179.83777 * 22 21 19 24 24 C 1.46497 * 126.59732 * 180.16957 * 23 22 21 25 25 N 1.40210 * 106.80896 * 0.41429 * 23 22 21 26 26 N 1.28770 * 108.36694 * 359.73505 * 25 23 22 27 27 H 1.09007 * 109.47074 * 300.00417 * 1 2 3 28 28 H 1.09006 * 109.47265 * 59.99640 * 1 2 3 29 29 H 1.08998 * 109.47351 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.88074 * 338.85980 * 5 3 2 31 31 H 1.09002 * 109.87912 * 100.02492 * 5 3 2 32 32 H 0.97000 * 120.00105 * 179.97438 * 10 9 7 33 33 H 1.08997 * 110.35272 * 265.25581 * 15 6 5 34 34 H 1.09006 * 110.40321 * 142.91455 * 15 6 5 35 35 H 0.96990 * 120.00418 * 90.42045 * 18 16 15 36 36 H 1.08001 * 126.58069 * 359.97438 * 22 21 19 37 37 H 1.09000 * 109.47167 * 270.31436 * 24 23 22 38 38 H 1.09003 * 109.46717 * 30.31589 * 24 23 22 39 39 H 1.09000 * 109.46815 * 150.31231 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3362 2.0288 0.4588 5 6 2.3811 1.7380 -1.4343 6 7 3.6686 2.4438 -1.3582 7 6 4.3547 2.9689 -2.4205 8 1 5.2973 3.4710 -2.2595 9 6 3.8389 2.8561 -3.7042 10 7 2.6905 2.2439 -3.9005 11 14 4.7754 3.5719 -5.1534 12 1 6.0293 4.2033 -4.6693 13 1 5.1050 2.4882 -6.1137 14 1 3.9360 4.5937 -5.8291 15 6 4.0998 2.4913 0.0512 16 6 3.3817 1.2957 0.7255 17 1 3.9155 0.3638 0.5395 18 7 3.2168 1.5251 2.1631 19 6 4.1768 1.1307 3.0228 20 8 5.1800 0.5847 2.6053 21 6 4.0082 1.3561 4.4710 22 6 4.8968 0.9963 5.4439 23 7 4.3658 1.3847 6.6208 24 6 4.9631 1.2131 7.9474 25 7 3.1295 1.9793 6.3313 26 7 2.9515 1.9452 5.0564 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 2.4768 0.8601 -2.0731 31 1 1.6153 2.4052 -1.8299 32 1 2.3298 2.1653 -4.7975 33 1 3.7888 3.4291 0.5114 34 1 5.1811 2.3732 0.1220 35 1 2.4168 1.9608 2.4961 36 1 5.8440 0.4984 5.2983 37 1 4.6509 0.2560 8.3654 38 1 6.0496 1.2354 7.8623 39 1 4.6332 2.0202 8.6015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081617023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:10 Heat of formation + Delta-G solvation = 28.040603 kcal Electronic energy + Delta-G solvation = -23715.952363 eV Core-core repulsion = 20082.308690 eV Total energy + Delta-G solvation = -3633.643673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.20932 -40.91148 -39.50340 -37.49776 -35.80071 -35.41468 -33.66953 -32.06220 -30.55914 -29.15808 -28.39677 -27.51368 -26.20678 -24.57402 -23.17201 -22.33315 -22.05175 -21.39374 -19.48075 -18.80512 -17.95415 -17.29985 -17.23015 -17.02434 -16.57608 -15.92302 -15.82361 -15.77950 -15.57784 -15.30112 -15.01603 -14.51224 -14.14811 -14.01142 -13.91818 -13.60462 -13.20968 -13.12608 -12.97649 -12.77228 -12.58604 -12.31269 -12.27100 -12.01919 -11.85703 -11.65045 -11.31941 -11.31161 -10.76943 -10.61723 -10.39958 -10.07550 -8.95739 -7.85720 -5.24045 0.15882 0.59141 1.18188 1.47399 1.49019 1.59513 1.98719 2.20828 2.47912 2.76990 3.15544 3.33882 3.47534 3.52507 3.81082 3.91762 3.93065 3.98083 4.10155 4.36590 4.40622 4.44785 4.51198 4.60106 4.65248 4.71038 4.78364 4.84264 4.87025 4.98228 5.32149 5.38144 5.44444 5.46427 5.66884 6.14446 6.30577 6.38426 6.88668 7.05740 7.10882 7.70760 8.33803 9.24167 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.003558 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.898003 B = 7866.636531 C = 8737.141837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.075 3.925 4 H 0.092 0.908 5 C 0.176 3.824 6 N -0.621 5.621 7 C -0.245 4.245 8 H 0.085 0.915 9 C -0.064 4.064 10 N -0.950 5.950 11 Si 0.983 3.017 12 H -0.265 1.265 13 H -0.292 1.292 14 H -0.289 1.289 15 C 0.131 3.869 16 C 0.151 3.849 17 H 0.085 0.915 18 N -0.692 5.692 19 C 0.606 3.394 20 O -0.567 6.567 21 C -0.123 4.123 22 C 0.112 3.888 23 N -0.351 5.351 24 C 0.074 3.926 25 N -0.090 5.090 26 N -0.225 5.225 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.249 0.751 33 H 0.038 0.962 34 H 0.043 0.957 35 H 0.415 0.585 36 H 0.238 0.762 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 -3.258 24.754 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.016 3.984 4 H 0.110 0.890 5 C 0.050 3.950 6 N -0.349 5.349 7 C -0.374 4.374 8 H 0.103 0.897 9 C -0.257 4.257 10 N -0.598 5.598 11 Si 0.811 3.189 12 H -0.190 1.190 13 H -0.219 1.219 14 H -0.216 1.216 15 C 0.005 3.995 16 C 0.045 3.955 17 H 0.103 0.897 18 N -0.342 5.342 19 C 0.392 3.608 20 O -0.445 6.445 21 C -0.264 4.264 22 C -0.046 4.046 23 N -0.135 5.135 24 C -0.064 4.064 25 N -0.071 5.071 26 N -0.099 5.099 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.252 0.748 36 H 0.255 0.745 37 H 0.127 0.873 38 H 0.148 0.852 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.893 -3.115 24.925 25.135 hybrid contribution 0.522 0.220 -1.416 1.526 sum 1.415 -2.895 23.509 23.729 Atomic orbital electron populations 1.22992 0.79361 1.03951 1.00679 1.87880 1.21733 1.26887 1.94937 1.23498 0.93602 0.85263 0.96052 0.89044 1.21280 0.87209 0.94823 0.91656 1.44539 1.21917 1.66436 1.01993 1.19505 1.02686 1.29433 0.85754 0.89726 1.25693 0.98474 1.01477 1.00021 1.70168 1.20598 1.48410 1.20633 0.84951 0.77957 0.77197 0.78837 1.18969 1.21901 1.21595 1.21933 0.97584 0.95466 0.84537 1.21929 0.95862 0.98873 0.78855 0.89736 1.45530 1.22542 1.60579 1.05555 1.17042 0.82503 0.77367 0.83927 1.90806 1.30041 1.44828 1.78846 1.21312 0.96288 1.13568 0.95183 1.23838 1.00697 0.96328 0.83737 1.50728 1.14713 1.38620 1.09446 1.22746 1.00846 1.06103 0.76726 1.81898 0.99045 1.18754 1.07367 1.74595 1.21472 1.12392 1.01423 0.92127 0.94422 0.87958 0.96060 0.95977 0.94215 0.94383 0.93878 0.74847 0.74534 0.87288 0.85240 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.85 113.37 1.23 1.97 16 2 O -0.40 -15.03 10.43 -148.98 -1.55 -16.59 16 3 C 0.08 2.97 3.08 31.78 0.10 3.06 16 4 H 0.09 3.12 7.68 -2.39 -0.02 3.10 16 5 C 0.18 9.06 5.15 86.73 0.45 9.50 16 6 N -0.62 -33.42 3.40 -691.85 -2.35 -35.77 16 7 C -0.25 -14.20 10.28 84.03 0.86 -13.33 16 8 H 0.08 4.70 7.83 -2.91 -0.02 4.67 16 9 C -0.06 -3.69 5.49 84.86 0.47 -3.23 16 10 N -0.95 -58.00 10.31 21.65 0.22 -57.77 16 11 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 14 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 15 C 0.13 5.84 6.93 86.85 0.60 6.44 16 16 C 0.15 5.94 3.09 46.38 0.14 6.09 16 17 H 0.08 3.76 7.63 -2.39 -0.02 3.74 16 18 N -0.69 -22.25 5.21 -439.11 -2.29 -24.54 16 19 C 0.61 19.35 7.82 86.69 0.68 20.03 16 20 O -0.57 -21.26 16.56 -4.04 -0.07 -21.33 16 21 C -0.12 -3.16 6.99 40.82 0.29 -2.87 16 22 C 0.11 1.90 11.31 83.85 0.95 2.85 16 23 N -0.35 -5.04 4.03 -368.59 -1.49 -6.53 16 24 C 0.07 0.17 11.51 127.77 1.47 1.64 16 25 N -0.09 -2.05 13.78 37.02 0.51 -1.54 16 26 N -0.23 -5.98 12.04 -50.00 -0.60 -6.58 16 27 H 0.06 1.41 8.12 -2.38 -0.02 1.39 16 28 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.02 1.25 7.29 -2.39 -0.02 1.23 16 31 H 0.02 1.23 7.51 -2.39 -0.02 1.21 16 32 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.41 11.67 8.22 -92.72 -0.76 10.90 16 36 H 0.24 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -79.94 336.78 1.96 -77.98 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.31 Total: 11.83 kcal Atomic # 6 Polarization: 24.92 SS G_CDS: 7.23 Total: 32.15 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -5.99 Total: -132.73 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -1.62 Total: -37.92 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -79.94 1.96 -77.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081617023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.020 kcal (2) G-P(sol) polarization free energy of solvation -79.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds