Wall clock time and date at job start Tue Mar 31 2020 03:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28707 * 126.03690 * 2 1 4 4 N 1.28510 * 110.63749 * 180.02562 * 3 2 1 5 5 C 1.33322 * 109.44002 * 359.76074 * 4 3 2 6 6 C 1.37003 * 106.37040 * 0.37691 * 5 4 3 7 7 C 1.47233 * 127.18913 * 179.90735 * 6 5 4 8 8 O 1.21618 * 120.00179 * 184.84264 * 7 6 5 9 9 N 1.34782 * 119.99602 * 4.84304 * 7 6 5 10 10 C 1.46507 * 119.99714 * 174.96798 * 9 7 6 11 11 H 1.09005 * 109.44752 * 35.03076 * 10 9 7 12 12 C 1.53042 * 109.45851 * 275.06914 * 10 9 7 13 13 C 1.53630 * 109.23875 * 178.49011 * 12 10 9 14 14 N 1.46928 * 108.54161 * 54.85407 * 13 12 10 15 15 C 1.36941 * 120.62899 * 126.36836 * 14 13 12 16 16 H 1.07989 * 119.99675 * 209.05816 * 15 14 13 17 17 C 1.38811 * 119.99686 * 28.78194 * 15 14 13 18 18 N 1.31612 * 120.00461 * 18.27506 * 17 15 14 19 19 Si 1.86802 * 119.99658 * 198.27796 * 17 15 14 20 20 H 1.48494 * 109.47416 * 94.97075 * 19 17 15 21 21 H 1.48505 * 109.46876 * 214.97059 * 19 17 15 22 22 H 1.48502 * 109.46918 * 334.96601 * 19 17 15 23 23 C 1.46922 * 118.74048 * 306.09402 * 14 13 12 24 24 C 1.53039 * 109.45766 * 154.99813 * 10 9 7 25 25 H 1.09001 * 109.52513 * 61.42367 * 24 10 9 26 26 O 1.42901 * 109.49981 * 301.33655 * 24 10 9 27 27 H 1.08999 * 109.47079 * 264.44468 * 1 2 3 28 28 H 1.08999 * 109.47406 * 24.44043 * 1 2 3 29 29 H 1.08997 * 109.47378 * 144.44169 * 1 2 3 30 30 H 1.07999 * 126.81174 * 180.25585 * 5 4 3 31 31 H 0.96991 * 120.00145 * 354.96896 * 9 7 6 32 32 H 1.09001 * 109.49504 * 298.56138 * 12 10 9 33 33 H 1.09001 * 109.49872 * 58.66243 * 12 10 9 34 34 H 1.09002 * 109.74053 * 295.11639 * 13 12 10 35 35 H 1.08998 * 109.66272 * 174.54863 * 13 12 10 36 36 H 0.96998 * 120.00601 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.58698 * 173.65064 * 23 14 13 38 38 H 1.09001 * 109.58455 * 294.07428 * 23 14 13 39 39 H 0.96696 * 113.99650 * 180.16171 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6995 -0.0005 5 6 3.5551 -0.6304 0.0043 6 6 2.2711 -1.1082 -0.0006 7 6 1.8462 -2.5179 0.0000 8 8 0.6662 -2.7973 -0.0938 9 7 2.7648 -3.4986 0.1044 10 6 2.3360 -4.8950 0.2161 11 1 1.4377 -5.0478 -0.3822 12 6 2.0343 -5.2201 1.6808 13 6 1.5491 -6.6739 1.7871 14 7 2.5554 -7.5487 1.1700 15 6 3.0790 -8.6073 1.8632 16 1 4.0816 -8.9483 1.6518 17 6 2.3230 -9.2382 2.8416 18 7 1.0166 -9.0803 2.8678 19 14 3.1599 -10.3114 4.1212 20 1 3.4247 -9.5099 5.3429 21 1 2.2767 -11.4557 4.4617 22 1 4.4435 -10.8219 3.5761 23 6 2.9849 -7.2697 -0.2071 24 6 3.4499 -5.8126 -0.2930 25 1 4.3411 -5.6785 0.3200 26 8 3.7521 -5.4877 -1.6514 27 1 -0.3633 -0.0995 1.0228 28 1 -0.3634 0.9356 -0.4252 29 1 -0.3634 -0.8360 -0.5976 30 1 4.4632 -1.2149 0.0091 31 1 3.7097 -3.2798 0.1057 32 1 2.9386 -5.0914 2.2757 33 1 1.2572 -4.5506 2.0495 34 1 0.5991 -6.7841 1.2641 35 1 1.4246 -6.9432 2.8359 36 1 0.4884 -9.5209 3.5517 37 1 3.8080 -7.9324 -0.4745 38 1 2.1496 -7.4275 -0.8894 39 1 4.4495 -6.0330 -2.0404 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090242659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:53 Heat of formation + Delta-G solvation = 13.116085 kcal Electronic energy + Delta-G solvation = -24174.687257 eV Core-core repulsion = 20540.396409 eV Total energy + Delta-G solvation = -3634.290848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -44.39772 -41.07109 -39.38189 -36.94144 -36.15697 -35.44830 -33.94449 -32.75442 -31.42152 -30.13648 -29.03555 -27.16911 -25.20554 -24.01458 -23.76076 -22.95289 -21.68382 -21.12510 -19.34413 -18.69320 -17.99258 -17.89537 -17.76368 -17.32509 -16.74208 -16.02029 -15.80155 -15.66343 -15.45310 -15.02736 -14.91943 -14.48272 -14.28280 -13.90941 -13.87100 -13.60616 -13.27060 -13.23286 -12.96913 -12.72769 -12.38619 -12.25670 -12.11418 -12.04778 -11.88396 -11.46602 -11.29180 -11.19585 -11.00779 -10.67941 -10.55460 -10.11916 -8.74204 -7.90105 -5.37433 -0.18507 1.03761 1.17860 1.49512 1.51561 1.60105 1.94874 2.00308 2.50306 3.11399 3.24886 3.30723 3.40712 3.64258 3.70125 3.87937 4.00229 4.08530 4.19429 4.24051 4.41938 4.51093 4.52723 4.58963 4.69369 4.85568 4.91273 4.93956 5.02725 5.15562 5.28098 5.34058 5.38548 5.62117 5.67491 6.33013 6.35640 6.91023 6.97604 7.11376 7.20569 7.79551 8.32002 9.17067 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.026041 B = 0.003599 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.979792 B = 7778.746197 C = 8100.321262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.253 5.253 3 N -0.077 5.077 4 N -0.300 5.300 5 C 0.016 3.984 6 C -0.078 4.078 7 C 0.596 3.404 8 O -0.567 6.567 9 N -0.682 5.682 10 C 0.173 3.827 11 H 0.065 0.935 12 C -0.130 4.130 13 C 0.180 3.820 14 N -0.603 5.603 15 C -0.266 4.266 16 H 0.076 0.924 17 C -0.047 4.047 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.286 1.286 21 H -0.300 1.300 22 H -0.264 1.264 23 C 0.117 3.883 24 C 0.102 3.898 25 H 0.079 0.921 26 O -0.571 6.571 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.107 0.893 30 H 0.234 0.766 31 H 0.418 0.582 32 H 0.073 0.927 33 H 0.061 0.939 34 H -0.005 1.005 35 H 0.059 0.941 36 H 0.250 0.750 37 H 0.075 0.925 38 H 0.012 0.988 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.168 14.416 -6.175 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.051 5.051 3 N -0.058 5.058 4 N -0.161 5.161 5 C -0.145 4.145 6 C -0.213 4.213 7 C 0.381 3.619 8 O -0.447 6.447 9 N -0.332 5.332 10 C 0.068 3.932 11 H 0.083 0.917 12 C -0.170 4.170 13 C 0.054 3.946 14 N -0.328 5.328 15 C -0.396 4.396 16 H 0.094 0.906 17 C -0.243 4.243 18 N -0.580 5.580 19 Si 0.795 3.205 20 H -0.213 1.213 21 H -0.227 1.227 22 H -0.188 1.188 23 C -0.010 4.010 24 C 0.041 3.959 25 H 0.097 0.903 26 O -0.378 6.378 27 H 0.125 0.875 28 H 0.147 0.853 29 H 0.125 0.875 30 H 0.251 0.749 31 H 0.255 0.745 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.013 0.987 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.775 16.126 -6.061 17.636 hybrid contribution 0.340 -2.322 0.690 2.446 sum 4.116 13.804 -5.371 15.373 Atomic orbital electron populations 1.22797 0.69821 1.07556 1.06765 1.47931 1.10920 1.03118 1.43097 1.78225 0.97068 1.12011 1.18458 1.74872 1.09345 1.13699 1.18222 1.24494 0.97488 0.91326 1.01214 1.21946 0.92199 0.90353 1.16812 1.16806 0.85574 0.83099 0.76415 1.90805 1.18111 1.84041 1.51695 1.45479 1.10092 1.05315 1.72342 1.20754 0.97519 0.78779 0.96136 0.91679 1.22425 1.01628 0.97881 0.95103 1.20620 0.89321 0.86625 0.98074 1.44265 1.47787 1.30524 1.10176 1.19555 0.96484 1.07931 1.15603 0.90606 1.25843 0.95316 0.99812 1.03288 1.70196 1.05145 1.47419 1.35223 0.85267 0.78044 0.77762 0.79456 1.21291 1.22664 1.18780 1.21708 0.98196 0.94782 0.86313 1.22312 0.96563 0.93615 0.83415 0.90348 1.86450 1.61958 1.63167 1.26241 0.87492 0.85338 0.87484 0.74931 0.74450 0.90786 0.92072 0.98693 0.92291 0.94056 0.90637 0.96961 0.75249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 10.82 127.77 1.38 2.52 16 2 N -0.25 -5.78 3.79 -356.77 -1.35 -7.13 16 3 N -0.08 -1.94 13.14 37.02 0.49 -1.46 16 4 N -0.30 -7.51 12.35 -57.50 -0.71 -8.22 16 5 C 0.02 0.32 11.54 84.18 0.97 1.29 16 6 C -0.08 -1.83 6.98 40.41 0.28 -1.54 16 7 C 0.60 16.05 7.76 86.61 0.67 16.72 16 8 O -0.57 -18.94 14.60 -4.09 -0.06 -19.00 16 9 N -0.68 -16.51 4.91 -445.84 -2.19 -18.70 16 10 C 0.17 5.38 2.16 45.02 0.10 5.48 16 11 H 0.06 2.44 7.51 -2.38 -0.02 2.43 16 12 C -0.13 -4.61 5.67 30.82 0.17 -4.43 16 13 C 0.18 8.33 5.33 86.51 0.46 8.79 16 14 N -0.60 -27.97 2.98 -698.25 -2.08 -30.05 16 15 C -0.27 -13.56 9.57 84.03 0.80 -12.76 16 16 H 0.08 3.67 7.89 -2.92 -0.02 3.65 16 17 C -0.05 -2.48 4.87 84.86 0.41 -2.06 16 18 N -0.93 -53.71 11.33 21.65 0.25 -53.47 16 19 Si 0.97 42.64 29.59 68.60 2.03 44.67 16 20 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 C 0.12 4.29 6.14 86.36 0.53 4.82 16 24 C 0.10 2.88 3.14 30.67 0.10 2.98 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 O -0.57 -13.45 13.16 -148.98 -1.96 -15.41 16 27 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 1.97 6.67 -2.39 -0.02 1.96 16 30 H 0.23 2.53 7.56 -2.91 -0.02 2.51 16 31 H 0.42 7.24 7.63 -92.72 -0.71 6.53 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.06 3.09 6.16 -2.39 -0.01 3.08 16 36 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 37 H 0.08 2.55 7.93 -2.39 -0.02 2.53 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.40 5.87 9.08 -74.06 -0.67 5.19 16 Total: -1.00 -71.12 326.90 0.02 -71.10 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -0.28 Total: 15.87 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 5.89 Total: 21.80 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -5.60 Total: -119.03 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -2.02 Total: -34.41 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -71.12 0.02 -71.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090242659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.217 kcal (2) G-P(sol) polarization free energy of solvation -71.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds