Wall clock time and date at job start Tue Mar 31 2020 04:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.54160 * 111.81740 * 298.61074 * 11 10 9 13 13 C 1.57145 * 103.23165 * 213.15150 * 12 11 10 14 14 C 1.54837 * 102.91040 * 38.20227 * 13 12 11 15 15 C 1.54160 * 104.33343 * 321.70558 * 14 13 12 16 16 H 1.08998 * 112.54829 * 146.61294 * 15 14 13 17 17 C 1.54332 * 108.86600 * 271.20682 * 15 14 13 18 18 N 1.48115 * 104.69065 * 89.54592 * 17 15 14 19 19 C 1.34774 * 127.83879 * 219.72730 * 18 17 15 20 20 O 1.21280 * 119.99636 * 180.02562 * 19 18 17 21 21 C 1.50695 * 120.00220 * 0.02562 * 19 18 17 22 22 C 1.50704 * 109.47088 * 179.97438 * 21 19 18 23 23 N 1.34780 * 119.99900 * 179.97438 * 22 21 19 24 24 O 1.21276 * 120.00188 * 0.02562 * 22 21 19 25 25 C 1.48116 * 104.31516 * 39.74351 * 18 17 15 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 29 29 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 30 30 H 1.08993 * 110.46699 * 332.49275 * 12 11 10 31 31 H 1.09004 * 110.45810 * 95.06952 * 12 11 10 32 32 H 1.08994 * 110.77585 * 279.77685 * 13 12 11 33 33 H 1.09000 * 110.56821 * 156.52570 * 13 12 11 34 34 H 1.08999 * 110.45497 * 202.99382 * 14 13 12 35 35 H 1.08994 * 110.57058 * 80.47459 * 14 13 12 36 36 H 1.08993 * 110.39366 * 330.73681 * 17 15 14 37 37 H 1.08997 * 110.39014 * 208.34607 * 17 15 14 38 38 H 1.08997 * 109.47338 * 300.00249 * 21 19 18 39 39 H 1.09004 * 109.47080 * 60.00020 * 21 19 18 40 40 H 0.97000 * 119.99888 * 0.02562 * 23 22 21 41 41 H 0.96996 * 120.00136 * 179.97438 * 23 22 21 42 42 H 1.09006 * 110.38979 * 201.46580 * 25 18 17 43 43 H 1.09003 * 110.48777 * 79.13339 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 6 0.1699 -4.8166 1.2360 13 6 -0.0799 -6.3449 1.5034 14 6 1.2872 -6.9845 1.1578 15 6 1.7797 -6.1926 -0.0697 16 1 2.8642 -6.0854 -0.0903 17 6 1.2451 -6.8711 -1.3487 18 7 -0.0647 -6.2256 -1.5969 19 6 -1.2049 -6.8055 -2.0212 20 8 -2.2037 -6.1357 -2.1785 21 6 -1.2389 -8.2860 -2.3001 22 6 -2.6200 -8.6795 -2.7572 23 7 -2.8871 -9.9640 -3.0660 24 8 -3.4908 -7.8403 -2.8480 25 6 0.1632 -4.7983 -1.2733 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0068 28 1 2.6846 -3.7098 -0.9038 29 1 2.6846 -3.7192 0.8761 30 1 0.6874 -4.3440 2.0707 31 1 -0.7717 -4.3068 1.0323 32 1 -0.8626 -6.7289 0.8493 33 1 -0.3321 -6.5142 2.5502 34 1 1.1623 -8.0378 0.9067 35 1 1.9837 -6.8717 1.9885 36 1 1.1166 -7.9410 -1.1856 37 1 1.9213 -6.6919 -2.1846 38 1 -0.5158 -8.5256 -3.0797 39 1 -0.9878 -8.8328 -1.3912 40 1 -2.1905 -10.6351 -2.9938 41 1 -3.7761 -10.2173 -3.3599 42 1 -0.7826 -4.3031 -1.0530 43 1 0.6708 -4.2967 -2.0972 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112287582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:50 Heat of formation + Delta-G solvation = -58.372630 kcal Electronic energy + Delta-G solvation = -24816.949609 eV Core-core repulsion = 21283.099121 eV Total energy + Delta-G solvation = -3533.850488 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -40.74039 -39.65923 -37.81929 -34.73213 -34.04818 -33.76059 -31.76904 -30.71911 -29.85894 -28.82351 -25.46403 -25.35213 -23.70477 -22.08993 -21.36365 -20.15756 -19.25346 -18.60907 -17.54973 -17.37331 -16.93229 -16.44379 -15.76646 -15.56860 -15.03411 -14.53461 -14.33061 -13.99030 -13.65115 -13.49418 -13.39870 -13.14687 -12.99996 -12.89655 -12.52184 -12.14523 -11.98127 -11.47264 -11.15976 -10.82493 -10.74455 -10.71387 -10.57520 -10.53009 -10.32462 -10.21242 -10.20800 -9.92202 -9.86071 -9.62337 -9.37066 -8.83592 -8.42887 -6.88016 -5.71245 -3.00490 2.48528 2.81271 2.82077 3.47026 3.49360 3.51261 3.52939 4.28530 4.46417 4.59948 4.66156 4.69753 4.81362 4.95476 5.01228 5.23335 5.33304 5.35212 5.44546 5.59913 5.62341 5.67760 5.77996 5.80724 5.92873 5.98529 6.08038 6.19738 6.25147 6.29766 6.40379 6.56102 6.56504 6.57889 6.67803 6.79042 6.82793 7.07725 7.72203 7.72961 8.10914 8.38889 8.46894 9.58160 10.15934 10.50458 11.51180 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.003850 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.016494 B = 7271.496823 C = 7981.963091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.173 3.827 11 C -0.075 4.075 12 C -0.104 4.104 13 C -0.123 4.123 14 C -0.112 4.112 15 C -0.099 4.099 16 H 0.094 0.906 17 C 0.105 3.895 18 N -0.622 5.622 19 C 0.529 3.471 20 O -0.495 6.495 21 C -0.162 4.162 22 C 0.514 3.486 23 N -0.862 5.862 24 O -0.493 6.493 25 C 0.123 3.877 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.019 0.981 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.398 0.602 41 H 0.402 0.598 42 H 0.085 0.915 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -25.078 -2.138 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.045 3.955 11 C -0.076 4.076 12 C -0.141 4.141 13 C -0.161 4.161 14 C -0.150 4.150 15 C -0.118 4.118 16 H 0.113 0.887 17 C -0.018 4.018 18 N -0.358 5.358 19 C 0.315 3.685 20 O -0.368 6.368 21 C -0.205 4.205 22 C 0.296 3.704 23 N -0.429 5.429 24 O -0.364 6.364 25 C 0.001 3.999 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.226 0.774 41 H 0.233 0.767 42 H 0.104 0.896 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.722 -23.901 -2.281 24.071 hybrid contribution 0.384 0.377 -0.109 0.549 sum 2.106 -23.524 -2.389 23.739 Atomic orbital electron populations 1.69651 1.05069 1.25777 1.57373 1.24739 0.95477 0.97635 1.02977 0.86286 0.78506 0.83720 0.77751 1.21333 1.21735 1.21350 1.19149 0.90920 0.84176 1.43075 0.91310 1.42335 1.05942 0.99747 1.89441 1.20600 0.92328 0.84692 0.97881 1.22265 0.95635 0.94514 0.95225 1.22743 0.99402 0.94922 0.97039 1.22852 0.96653 0.96278 1.00320 1.22347 0.97271 0.98009 0.97357 1.22700 1.00176 0.94739 0.94198 0.88733 1.22508 0.84684 0.97050 0.97578 1.48975 1.09519 1.10693 1.66569 1.19414 0.82140 0.88603 0.78358 1.90895 1.32148 1.64035 1.49676 1.21560 0.97372 0.96577 1.04989 1.20043 0.90001 0.82556 0.77821 1.43864 1.16827 1.09464 1.72700 1.90936 1.47153 1.49031 1.49254 1.22439 1.00378 0.80509 0.96572 0.93428 0.78078 0.96280 0.95923 0.90828 0.91321 0.92075 0.92178 0.92154 0.91464 0.90722 0.91098 0.86320 0.86352 0.77423 0.76735 0.89645 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -18.18 5.23 -59.90 -0.31 -18.50 16 10 C 0.17 3.32 5.10 -4.04 -0.02 3.30 16 11 C -0.08 -1.16 0.67 -152.19 -0.10 -1.27 16 12 C -0.10 -1.66 5.50 -23.87 -0.13 -1.79 16 13 C -0.12 -1.56 6.57 -23.51 -0.15 -1.71 16 14 C -0.11 -1.13 6.28 -25.16 -0.16 -1.29 16 15 C -0.10 -1.10 3.62 -88.30 -0.32 -1.42 16 16 H 0.09 0.97 7.88 -51.93 -0.41 0.56 16 17 C 0.11 1.02 6.34 -2.46 -0.02 1.00 16 18 N -0.62 -8.49 2.53 -169.44 -0.43 -8.92 16 19 C 0.53 7.91 7.87 -10.99 -0.09 7.83 16 20 O -0.50 -10.32 14.44 -18.96 -0.27 -10.60 16 21 C -0.16 -1.47 5.16 -29.04 -0.15 -1.62 16 22 C 0.51 5.87 8.09 -10.98 -0.09 5.78 16 23 N -0.86 -5.28 8.87 31.22 0.28 -5.01 16 24 O -0.49 -8.83 15.02 -18.96 -0.28 -9.11 16 25 C 0.12 2.09 5.51 -2.46 -0.01 2.07 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.39 10.25 7.06 -40.82 -0.29 9.96 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.25 7.96 -51.93 -0.41 0.84 16 31 H 0.07 1.26 7.42 -51.93 -0.39 0.87 16 32 H 0.06 0.83 7.67 -51.93 -0.40 0.43 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.48 7.45 -51.93 -0.39 0.09 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.49 6.60 -51.93 -0.34 0.15 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.12 0.70 7.95 -51.93 -0.41 0.28 16 40 H 0.40 0.92 8.83 -40.82 -0.36 0.56 16 41 H 0.40 2.26 8.93 -40.82 -0.36 1.89 16 42 H 0.09 1.73 7.15 -51.93 -0.37 1.35 16 43 H 0.07 1.35 7.95 -51.93 -0.41 0.94 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -37.97 344.06 -8.25 -46.22 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.63 Total: 7.44 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.49 Total: 3.55 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.26 Total: -60.28 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.56 Total: -19.71 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.97 -8.25 -46.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112287582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.155 kcal (2) G-P(sol) polarization free energy of solvation -37.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds