Wall clock time and date at job start Tue Mar 31 2020 04:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99780 * 294.29956 * 13 12 10 15 15 C 1.53240 * 109.33981 * 172.74878 * 14 13 12 16 16 N 1.47081 * 108.52372 * 53.82834 * 15 14 13 17 17 C 1.34773 * 120.88238 * 128.79677 * 16 15 14 18 18 O 1.21281 * 120.00261 * 180.02562 * 17 16 15 19 19 C 1.50702 * 120.00008 * 0.02562 * 17 16 15 20 20 C 1.53000 * 109.47334 * 180.02562 * 19 17 16 21 21 C 1.53000 * 117.50213 * 243.74886 * 20 19 17 22 22 C 1.53003 * 117.49756 * 175.08748 * 20 19 17 23 23 C 1.47080 * 118.23698 * 308.81494 * 16 15 14 24 24 C 1.46896 * 111.00331 * 169.99914 * 13 12 10 25 25 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 28 28 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 29 29 H 1.08999 * 109.49145 * 292.70328 * 14 13 12 30 30 H 1.08997 * 109.49388 * 52.78536 * 14 13 12 31 31 H 1.09005 * 109.62808 * 294.11596 * 15 14 13 32 32 H 1.08996 * 109.62930 * 173.54000 * 15 14 13 33 33 H 1.09004 * 109.47261 * 300.00801 * 19 17 16 34 34 H 1.09005 * 109.46956 * 60.00223 * 19 17 16 35 35 H 1.09008 * 115.54540 * 29.41958 * 20 19 17 36 36 H 1.09001 * 117.49138 * 0.02562 * 21 20 19 37 37 H 1.08993 * 117.49732 * 145.01824 * 21 20 19 38 38 H 1.09004 * 117.49293 * 214.98181 * 22 20 19 39 39 H 1.08993 * 117.49926 * 359.97438 * 22 20 19 40 40 H 1.08998 * 109.63014 * 291.47834 * 23 16 15 41 41 H 1.08995 * 109.62960 * 170.89604 * 23 16 15 42 42 H 1.09004 * 109.49194 * 307.21026 * 24 13 12 43 43 H 1.09001 * 109.49242 * 67.29136 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9693 -6.0189 -1.2314 15 6 4.0715 -7.0771 -1.1145 16 7 3.4541 -8.3537 -0.7242 17 6 3.7041 -9.4831 -1.4159 18 8 3.1860 -10.5270 -1.0802 19 6 4.6274 -9.4488 -2.6064 20 6 4.7381 -10.8518 -3.2066 21 6 6.1107 -11.5270 -3.1760 22 6 5.5430 -11.0059 -4.4987 23 6 2.5564 -8.3650 0.4408 24 6 1.5138 -7.2561 0.2626 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6167 -4.9162 0.9030 28 1 0.6174 -4.9252 -0.8769 29 1 2.3075 -6.2731 -2.0593 30 1 3.4198 -5.0429 -1.4118 31 1 4.7929 -6.7722 -0.3563 32 1 4.5727 -7.1915 -2.0757 33 1 4.2295 -8.7639 -3.3552 34 1 5.6141 -9.1091 -2.2913 35 1 3.8615 -11.4874 -3.0808 36 1 6.9347 -10.9718 -2.7279 37 1 6.1372 -12.6069 -3.0305 38 1 5.1961 -11.7432 -5.2227 39 1 5.9933 -10.1078 -4.9213 40 1 3.1320 -8.1839 1.3484 41 1 2.0558 -9.3309 0.5079 42 1 0.9087 -7.1773 1.1658 43 1 0.8722 -7.4930 -0.5861 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112595753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:45 Heat of formation + Delta-G solvation = -34.557582 kcal Electronic energy + Delta-G solvation = -23713.083346 eV Core-core repulsion = 20180.265556 eV Total energy + Delta-G solvation = -3532.817790 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.33436 -38.79075 -37.62036 -36.90816 -34.52512 -33.80588 -31.47163 -31.29322 -29.78466 -28.46113 -25.67549 -23.90247 -23.69824 -22.62801 -21.76072 -20.51704 -19.30308 -18.86655 -17.92169 -17.25107 -16.43808 -16.02616 -15.72789 -15.10396 -15.03607 -14.85006 -14.67046 -14.28094 -13.99637 -13.93527 -13.64239 -13.47807 -13.19626 -12.58411 -12.36125 -11.99812 -11.77203 -11.69609 -11.59806 -11.55671 -11.24167 -11.17205 -11.14547 -10.84717 -10.60089 -10.42111 -10.27068 -10.25588 -9.78784 -9.51535 -8.87149 -8.40296 -8.02603 -7.92469 -6.45522 -3.86548 2.56253 2.87882 3.14754 3.24052 3.29533 3.56155 3.84468 3.91825 4.19680 4.31150 4.45405 4.67020 4.81540 4.85284 4.99317 5.04310 5.17835 5.20554 5.22058 5.27215 5.34419 5.35234 5.38606 5.44494 5.53206 5.64662 5.71514 5.77867 5.84392 5.85692 5.87802 6.06547 6.11238 6.16191 6.21873 6.47213 7.11263 7.27629 7.38816 7.51476 8.02088 8.10216 8.57063 9.13867 9.50036 10.01081 10.72108 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.029576 B = 0.002748 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.496057 B =10186.469748 C =10796.728467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.038 3.962 15 C 0.114 3.886 16 N -0.613 5.613 17 C 0.518 3.482 18 O -0.548 6.548 19 C -0.111 4.111 20 C -0.140 4.140 21 C -0.179 4.179 22 C -0.181 4.181 23 C 0.118 3.882 24 C 0.041 3.959 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.027 0.973 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.345 -17.135 -5.343 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.090 4.090 15 C -0.009 4.009 16 N -0.347 5.347 17 C 0.306 3.694 18 O -0.426 6.426 19 C -0.150 4.150 20 C -0.158 4.158 21 C -0.216 4.216 22 C -0.218 4.218 23 C -0.004 4.004 24 C -0.088 4.088 25 H 0.082 0.918 26 H 0.225 0.775 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.134 0.866 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.081 -17.436 -4.773 19.073 hybrid contribution -0.889 0.926 -0.613 1.422 sum 5.192 -16.511 -5.386 18.127 Atomic orbital electron populations 1.69612 1.05959 1.28215 1.50450 1.25272 0.95633 0.99766 0.97276 0.85856 0.79259 0.80799 0.78373 1.20423 1.20921 1.19383 1.19692 0.93350 0.82162 1.47669 0.87869 1.41883 1.09233 1.04621 1.64200 1.19706 0.88392 0.84501 0.84538 1.90472 1.13646 1.86872 1.55356 1.21854 0.93889 0.91081 1.01662 1.61498 1.25352 1.01551 1.35541 1.22652 0.95380 1.01486 0.89503 1.21924 0.95944 0.81895 1.01133 1.48280 1.47234 1.08736 1.30463 1.20561 0.81812 0.82991 0.84015 1.90655 1.52298 1.30359 1.69259 1.21257 1.00176 0.97555 0.96048 1.22064 0.96602 0.96765 1.00393 1.23041 0.96707 1.00852 1.00965 1.23015 1.04368 1.03399 0.91035 1.21682 0.91594 0.99075 0.88076 1.22510 0.95441 0.89566 1.01316 0.91835 0.77475 0.89166 0.93452 0.95487 0.86583 0.89949 0.89700 0.88434 0.88699 0.86496 0.88813 0.88820 0.88725 0.88684 0.90641 0.88913 0.89512 0.94746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 9 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 10 C 0.44 9.96 7.44 -10.99 -0.08 9.88 16 11 O -0.58 -14.68 13.91 5.55 0.08 -14.60 16 12 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 13 N -0.51 -8.11 4.37 -235.76 -1.03 -9.14 16 14 C 0.04 0.57 5.26 -3.70 -0.02 0.55 16 15 C 0.11 1.37 6.50 -3.60 -0.02 1.35 16 16 N -0.61 -7.70 3.01 -172.46 -0.52 -8.22 16 17 C 0.52 6.62 7.71 -10.99 -0.08 6.53 16 18 O -0.55 -8.69 15.02 5.56 0.08 -8.61 16 19 C -0.11 -1.04 4.35 -27.88 -0.12 -1.17 16 20 C -0.14 -1.34 5.41 -90.62 -0.49 -1.83 16 21 C -0.18 -1.48 10.18 -26.69 -0.27 -1.75 16 22 C -0.18 -1.38 10.26 -26.69 -0.27 -1.65 16 23 C 0.12 1.48 6.60 -3.60 -0.02 1.46 16 24 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 25 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 27 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 28 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.12 2.07 5.77 -51.93 -0.30 1.77 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 0.79 6.02 -51.93 -0.31 0.48 16 33 H 0.10 0.80 7.66 -51.93 -0.40 0.40 16 34 H 0.09 0.76 7.74 -51.93 -0.40 0.36 16 35 H 0.12 1.33 7.31 -51.92 -0.38 0.95 16 36 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.16 7.06 -51.93 -0.37 0.80 16 42 H 0.09 0.99 7.99 -51.93 -0.41 0.57 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -31.48 349.49 -8.78 -40.26 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.62 Total: 9.80 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -1.68 Total: 6.87 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.88 Total: -54.58 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.16 Total: -23.20 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.48 -8.78 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112595753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.700 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds