Wall clock time and date at job start Tue Mar 31 2020 04:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99780 * 294.29956 * 13 12 10 15 15 C 1.53240 * 109.33981 * 172.74878 * 14 13 12 16 16 N 1.47081 * 108.52372 * 53.82834 * 15 14 13 17 17 C 1.34773 * 120.88238 * 128.79677 * 16 15 14 18 18 O 1.21281 * 120.00261 * 180.02562 * 17 16 15 19 19 C 1.50702 * 120.00008 * 0.02562 * 17 16 15 20 20 C 1.53000 * 109.47334 * 180.02562 * 19 17 16 21 21 C 1.53000 * 117.50213 * 243.74886 * 20 19 17 22 22 C 1.53003 * 117.49756 * 175.08748 * 20 19 17 23 23 C 1.47080 * 118.23698 * 308.81494 * 16 15 14 24 24 C 1.46896 * 111.00331 * 169.99914 * 13 12 10 25 25 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 28 28 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 29 29 H 1.08999 * 109.49145 * 292.70328 * 14 13 12 30 30 H 1.08997 * 109.49388 * 52.78536 * 14 13 12 31 31 H 1.09005 * 109.62808 * 294.11596 * 15 14 13 32 32 H 1.08996 * 109.62930 * 173.54000 * 15 14 13 33 33 H 1.09004 * 109.47261 * 300.00801 * 19 17 16 34 34 H 1.09005 * 109.46956 * 60.00223 * 19 17 16 35 35 H 1.09008 * 115.54540 * 29.41958 * 20 19 17 36 36 H 1.09001 * 117.49138 * 0.02562 * 21 20 19 37 37 H 1.08993 * 117.49732 * 145.01824 * 21 20 19 38 38 H 1.09004 * 117.49293 * 214.98181 * 22 20 19 39 39 H 1.08993 * 117.49926 * 359.97438 * 22 20 19 40 40 H 1.08998 * 109.63014 * 291.47834 * 23 16 15 41 41 H 1.08995 * 109.62960 * 170.89604 * 23 16 15 42 42 H 1.09004 * 109.49194 * 307.21026 * 24 13 12 43 43 H 1.09001 * 109.49242 * 67.29136 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9693 -6.0189 -1.2314 15 6 4.0715 -7.0771 -1.1145 16 7 3.4541 -8.3537 -0.7242 17 6 3.7041 -9.4831 -1.4159 18 8 3.1860 -10.5270 -1.0802 19 6 4.6274 -9.4488 -2.6064 20 6 4.7381 -10.8518 -3.2066 21 6 6.1107 -11.5270 -3.1760 22 6 5.5430 -11.0059 -4.4987 23 6 2.5564 -8.3650 0.4408 24 6 1.5138 -7.2561 0.2626 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6167 -4.9162 0.9030 28 1 0.6174 -4.9252 -0.8769 29 1 2.3075 -6.2731 -2.0593 30 1 3.4198 -5.0429 -1.4118 31 1 4.7929 -6.7722 -0.3563 32 1 4.5727 -7.1915 -2.0757 33 1 4.2295 -8.7639 -3.3552 34 1 5.6141 -9.1091 -2.2913 35 1 3.8615 -11.4874 -3.0808 36 1 6.9347 -10.9718 -2.7279 37 1 6.1372 -12.6069 -3.0305 38 1 5.1961 -11.7432 -5.2227 39 1 5.9933 -10.1078 -4.9213 40 1 3.1320 -8.1839 1.3484 41 1 2.0558 -9.3309 0.5079 42 1 0.9087 -7.1773 1.1658 43 1 0.8722 -7.4930 -0.5861 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112595753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:38 Heat of formation + Delta-G solvation = -56.114413 kcal Electronic energy + Delta-G solvation = -23714.018120 eV Core-core repulsion = 20180.265556 eV Total energy + Delta-G solvation = -3533.752565 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 6.87 seconds Orbital eigenvalues (eV) -41.37681 -40.29488 -38.82431 -37.82146 -36.04409 -35.40271 -33.25082 -32.48590 -30.79255 -29.64153 -27.26020 -25.45725 -24.75375 -23.22503 -22.75331 -21.38384 -21.02966 -19.93448 -19.78452 -18.24843 -17.79880 -17.23312 -16.75133 -16.59753 -16.34169 -16.10622 -15.86218 -15.48905 -15.39596 -15.28339 -14.84740 -14.53862 -14.29108 -13.96580 -13.51262 -13.36580 -13.20774 -12.97172 -12.78280 -12.51988 -12.40556 -12.33463 -12.27466 -12.18740 -12.12245 -12.07674 -11.42655 -11.28598 -10.98503 -10.72187 -10.32742 -9.98586 -9.76314 -9.21890 -8.44465 -5.92673 1.39398 1.43579 1.55842 1.58735 1.91713 2.07706 2.29666 2.72618 2.91747 3.22824 3.37851 3.47433 3.75937 3.88679 3.98559 4.04644 4.13117 4.18173 4.23659 4.27502 4.39816 4.45842 4.49483 4.56008 4.59078 4.64886 4.71547 4.74640 4.81566 4.86338 4.94739 5.04223 5.07051 5.28007 5.34010 5.43078 5.44503 5.82371 6.05317 6.13901 6.39354 6.62631 7.11836 7.15332 7.59264 8.14114 8.72962 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.029576 B = 0.002748 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.496057 B =10186.469748 C =10796.728467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.328 4.328 8 H 0.081 0.919 9 N -0.576 5.576 10 C 0.444 3.556 11 O -0.610 6.610 12 C 0.058 3.942 13 N -0.531 5.531 14 C 0.040 3.960 15 C 0.122 3.878 16 N -0.614 5.614 17 C 0.514 3.486 18 O -0.583 6.583 19 C -0.105 4.105 20 C -0.159 4.159 21 C -0.181 4.181 22 C -0.166 4.166 23 C 0.118 3.882 24 C 0.047 3.953 25 H 0.276 0.724 26 H 0.395 0.605 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -17.396 -6.068 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.458 4.458 8 H 0.099 0.901 9 N -0.213 5.213 10 C 0.231 3.769 11 O -0.496 6.496 12 C -0.073 4.073 13 N -0.256 5.256 14 C -0.089 4.089 15 C 0.000 4.000 16 N -0.347 5.347 17 C 0.305 3.695 18 O -0.464 6.464 19 C -0.144 4.144 20 C -0.178 4.178 21 C -0.218 4.218 22 C -0.203 4.203 23 C -0.005 4.005 24 C -0.081 4.081 25 H 0.086 0.914 26 H 0.229 0.771 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.510 -17.710 -5.503 19.654 hybrid contribution -1.013 0.916 -0.377 1.417 sum 5.496 -16.793 -5.880 18.623 Atomic orbital electron populations 1.69676 1.06861 1.29193 1.50631 1.26026 0.96503 1.02418 0.96482 0.84943 0.77914 0.76997 0.78601 1.19654 1.19865 1.19678 1.19655 0.92721 0.83869 1.49540 0.90057 1.41956 1.09319 1.04759 1.65276 1.20664 0.88318 0.85719 0.82159 1.90454 1.15395 1.87674 1.56032 1.21723 0.93605 0.88540 1.03436 1.61482 1.25639 1.02319 1.36204 1.22562 0.96070 1.00717 0.89540 1.21887 0.94762 0.80815 1.02580 1.48352 1.47101 1.08882 1.30347 1.21162 0.81642 0.82273 0.84460 1.90641 1.53797 1.31588 1.70347 1.21300 1.00262 0.97969 0.94855 1.21982 0.96450 0.96750 1.02582 1.23137 0.96103 1.00985 1.01608 1.23101 1.02790 1.03926 0.90454 1.21668 0.91662 0.98864 0.88278 1.22528 0.95446 0.87937 1.02209 0.91419 0.77128 0.87098 0.91736 0.94711 0.89769 0.90754 0.86576 0.86744 0.86788 0.88899 0.87903 0.88892 0.88142 0.87222 0.90668 0.88976 0.87838 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 42.08 29.55 68.60 2.03 44.11 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.33 -18.08 9.68 84.04 0.81 -17.27 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.58 -28.55 5.29 -306.98 -1.62 -30.17 16 10 C 0.44 20.04 7.44 87.66 0.65 20.69 16 11 O -0.61 -31.43 13.91 -3.07 -0.04 -31.47 16 12 C 0.06 1.90 5.45 85.56 0.47 2.37 16 13 N -0.53 -16.05 4.37 -899.82 -3.93 -19.98 16 14 C 0.04 1.14 5.26 86.38 0.45 1.59 16 15 C 0.12 2.75 6.50 86.35 0.56 3.31 16 16 N -0.61 -14.47 3.01 -817.94 -2.46 -16.94 16 17 C 0.51 12.48 7.71 87.66 0.68 13.15 16 18 O -0.58 -18.31 15.02 -3.03 -0.05 -18.36 16 19 C -0.10 -1.75 4.35 29.85 0.13 -1.62 16 20 C -0.16 -2.84 5.41 -10.79 -0.06 -2.89 16 21 C -0.18 -2.69 10.18 30.62 0.31 -2.38 16 22 C -0.17 -2.15 10.26 30.62 0.31 -1.84 16 23 C 0.12 2.80 6.60 86.35 0.57 3.37 16 24 C 0.05 1.11 5.62 86.39 0.49 1.60 16 25 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 26 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 27 H 0.11 3.20 7.97 -2.39 -0.02 3.18 16 28 H 0.06 1.92 8.12 -2.39 -0.02 1.91 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 3.01 5.77 -2.39 -0.01 2.99 16 31 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.12 1.85 6.02 -2.39 -0.01 1.84 16 33 H 0.11 1.53 7.66 -2.38 -0.02 1.51 16 34 H 0.11 1.48 7.74 -2.38 -0.02 1.46 16 35 H 0.09 2.12 7.31 -2.38 -0.02 2.10 16 36 H 0.10 1.32 8.03 -2.39 -0.02 1.31 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.09 2.23 7.06 -2.39 -0.02 2.21 16 42 H 0.10 2.11 7.99 -2.39 -0.02 2.09 16 43 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -68.52 349.49 0.33 -68.18 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.29 Total: 33.66 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 5.84 Total: 19.78 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -7.73 Total: -115.90 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -0.09 Total: -49.83 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -68.52 0.33 -68.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112595753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.069 kcal (2) G-P(sol) polarization free energy of solvation -68.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.87 seconds