Wall clock time and date at job start Tue Mar 31 2020 03:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39047 * 120.00226 * 179.97438 * 2 1 3 5 5 C 1.39310 * 119.90690 * 0.02562 * 4 2 1 6 6 C 1.36533 * 120.26719 * 179.97438 * 5 4 2 7 7 C 1.39853 * 120.08339 * 0.02562 * 6 5 4 8 8 C 1.47372 * 120.09538 * 179.97438 * 7 6 5 9 9 O 1.21605 * 119.99944 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99678 * 359.97438 * 8 7 6 11 11 C 1.46503 * 119.99914 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47126 * 180.02562 * 11 10 8 13 13 N 1.46496 * 109.46906 * 180.02562 * 12 11 10 14 14 C 1.36941 * 119.99933 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99879 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00292 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99775 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00395 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47112 * 89.99853 * 18 16 14 20 20 H 1.48501 * 109.47516 * 209.99658 * 18 16 14 21 21 H 1.48501 * 109.47038 * 329.99923 * 18 16 14 22 22 C 1.40064 * 119.81364 * 0.02562 * 7 6 5 23 23 F 1.35098 * 120.13413 * 180.02562 * 22 7 6 24 24 C 1.38008 * 119.73662 * 359.70058 * 22 7 6 25 25 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 26 26 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 27 27 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 28 28 H 1.09000 * 109.47202 * 89.99334 * 3 2 1 29 29 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 30 30 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 31 31 H 1.07990 * 119.86183 * 0.02562 * 5 4 2 32 32 H 1.07995 * 119.95535 * 179.97438 * 6 5 4 33 33 H 0.97003 * 120.00061 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.47078 * 300.00548 * 11 10 8 35 35 H 1.09002 * 109.46408 * 60.00595 * 11 10 8 36 36 H 1.08998 * 109.47351 * 300.00597 * 12 11 10 37 37 H 1.09006 * 109.46756 * 60.00257 * 12 11 10 38 38 H 0.96993 * 120.00477 * 359.97438 * 13 12 11 39 39 H 0.96999 * 120.00186 * 179.97438 * 17 16 14 40 40 H 1.07995 * 120.04529 * 180.29766 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1603 -1.2042 0.0005 5 6 1.4618 -2.4095 0.0005 6 6 2.1371 -3.5962 0.0005 7 6 3.5356 -3.6069 0.0011 8 6 4.2647 -4.8876 0.0016 9 8 5.4807 -4.8950 0.0026 10 7 3.5837 -6.0507 0.0022 11 6 4.3085 -7.3239 0.0022 12 6 3.3072 -8.4807 0.0022 13 7 4.0320 -9.7538 0.0028 14 6 3.3401 -10.9356 0.0024 15 1 2.2601 -10.9291 0.0020 16 6 4.0268 -12.1419 0.0035 17 7 5.3430 -12.1499 0.0044 18 14 3.0831 -13.7540 0.0036 19 1 2.8340 -14.1819 -1.3965 20 1 3.8788 -14.7935 0.7047 21 1 1.7861 -13.5682 0.7027 22 6 4.2413 -2.3971 0.0022 23 9 5.5923 -2.3999 0.0022 24 6 3.5511 -1.2020 -0.0036 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 -0.8900 -0.5138 27 1 -0.3633 0.8900 -0.5139 28 1 2.3791 1.5834 1.0277 29 1 3.1499 1.1384 -0.5137 30 1 1.6085 2.0284 -0.5138 31 1 0.3819 -2.4052 -0.0003 32 1 1.5905 -4.5276 0.0010 33 1 2.6137 -6.0448 0.0018 34 1 4.9345 -7.3856 -0.8880 35 1 4.9350 -7.3852 0.8920 36 1 2.6808 -8.4192 0.8921 37 1 2.6809 -8.4192 -0.8879 38 1 5.0019 -9.7598 0.0027 39 1 5.8229 -12.9929 0.0056 40 1 4.0902 -0.2662 -0.0076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129386553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:56 Heat of formation + Delta-G solvation = -26.357240 kcal Electronic energy + Delta-G solvation = -22569.148459 eV Core-core repulsion = 18913.225957 eV Total energy + Delta-G solvation = -3655.922502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.144 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -48.88385 -40.24890 -39.06752 -36.38077 -35.58704 -33.79633 -31.63942 -31.14007 -30.43949 -28.59600 -27.67870 -25.78484 -23.66797 -22.69977 -22.12490 -21.38094 -20.27872 -18.46451 -17.36556 -17.16291 -16.80558 -16.08769 -15.93440 -15.47217 -15.40039 -15.01658 -14.94767 -14.71294 -14.47341 -13.86760 -13.62271 -13.21403 -13.14266 -13.10811 -12.89487 -12.85432 -12.62693 -12.46035 -12.34051 -11.44271 -11.38582 -11.06013 -10.79567 -10.76909 -10.23306 -10.09911 -9.83280 -9.63851 -9.14312 -8.94206 -8.75952 -7.82244 -6.96203 -5.76602 -3.07290 0.72341 0.98977 2.50683 2.86102 3.32477 3.44272 3.49236 3.51197 3.68324 4.06052 4.28992 4.43186 4.59902 4.66290 4.72403 4.79431 4.81331 4.98020 5.02884 5.12777 5.17700 5.21484 5.47209 5.53505 5.60216 5.75989 5.84435 5.86209 5.95527 6.01686 6.21380 6.36740 6.55490 6.63438 6.75491 6.81226 6.88794 7.68161 7.70585 8.40490 8.43844 9.52133 10.07518 10.42293 11.45995 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.002471 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.021240 B =11330.388306 C =12203.357981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.627 5.627 3 C 0.086 3.914 4 C 0.265 3.735 5 C -0.216 4.216 6 C -0.007 4.007 7 C -0.231 4.231 8 C 0.559 3.441 9 O -0.534 6.534 10 N -0.720 5.720 11 C 0.112 3.888 12 C 0.145 3.855 13 N -0.730 5.730 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.930 5.930 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.211 3.789 23 F -0.113 7.113 24 C -0.253 4.253 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.397 0.603 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.875 29.887 -0.171 32.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.336 5.336 3 C -0.057 4.057 4 C 0.159 3.841 5 C -0.239 4.239 6 C -0.027 4.027 7 C -0.237 4.237 8 C 0.346 3.654 9 O -0.412 6.412 10 N -0.372 5.372 11 C -0.011 4.011 12 C 0.017 3.983 13 N -0.375 5.375 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.189 3.811 23 F -0.091 7.091 24 C -0.277 4.277 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.231 0.769 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.178 29.923 -0.162 31.943 hybrid contribution -0.452 -0.860 0.004 0.971 sum -11.630 29.063 -0.159 31.304 Atomic orbital electron populations 1.21775 0.78729 1.03195 1.01783 1.46325 1.05578 1.03305 1.78348 1.21777 0.97549 0.84553 1.01783 1.17637 0.90247 0.86096 0.90093 1.20400 1.00350 0.90526 1.12579 1.20688 0.91854 0.98334 0.91804 1.19817 0.94184 0.92720 1.17008 1.17867 0.87175 0.83390 0.76988 1.90840 1.13160 1.87498 1.49705 1.45785 1.10192 1.05831 1.75409 1.21577 0.95526 0.81357 1.02689 1.20756 0.93519 0.85695 0.98366 1.42195 1.06078 0.99533 1.89667 1.19190 0.90972 0.83915 1.43338 0.91038 1.24789 0.95588 0.97814 1.02755 1.69672 1.05331 1.25623 1.57223 0.86144 0.78624 0.83586 0.77519 1.21650 1.21711 1.20727 1.17322 0.77160 0.92469 0.94104 1.91598 1.27949 1.97209 1.92361 1.20484 0.92804 0.97619 1.16761 0.92771 0.90737 0.91128 0.92778 0.90880 0.91076 0.84778 0.84567 0.76863 0.91204 0.91190 0.95795 0.95804 0.77968 0.93372 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.33 10.22 59.85 0.61 0.94 16 2 N -0.63 -3.85 3.39 -187.57 -0.64 -4.49 16 3 C 0.09 0.36 10.22 59.85 0.61 0.97 16 4 C 0.26 2.25 6.55 -83.88 -0.55 1.70 16 5 C -0.22 -1.74 9.13 -39.80 -0.36 -2.10 16 6 C -0.01 -0.07 9.48 -39.59 -0.38 -0.44 16 7 C -0.23 -3.04 5.88 -104.89 -0.62 -3.66 16 8 C 0.56 9.23 7.76 -12.54 -0.10 9.13 16 9 O -0.53 -11.10 15.33 5.27 0.08 -11.02 16 10 N -0.72 -10.74 5.50 -61.40 -0.34 -11.08 16 11 C 0.11 2.03 5.79 -4.04 -0.02 2.01 16 12 C 0.14 2.90 6.37 -4.04 -0.03 2.88 16 13 N -0.73 -18.91 5.60 -59.91 -0.34 -19.24 16 14 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 15 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 18 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.21 2.78 7.28 -38.98 -0.28 2.49 16 23 F -0.11 -1.78 15.54 2.25 0.04 -1.75 16 24 C -0.25 -2.52 9.17 -39.35 -0.36 -2.88 16 25 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.24 6.17 -51.93 -0.32 -0.08 16 27 H 0.07 0.16 7.89 -51.93 -0.41 -0.25 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.31 6.16 -51.93 -0.32 -0.01 16 30 H 0.07 0.18 7.89 -51.93 -0.41 -0.23 16 31 H 0.13 0.74 6.10 -52.49 -0.32 0.42 16 32 H 0.14 0.97 6.39 -52.49 -0.34 0.63 16 33 H 0.40 4.56 6.49 -40.82 -0.26 4.30 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.39 10.62 7.67 -40.82 -0.31 10.31 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.14 1.13 6.11 -52.49 -0.32 0.81 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -35.82 338.50 -7.21 -43.03 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.10 Total: 6.33 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.72 Total: 3.54 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.59 Total: -62.71 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.82 -7.21 -43.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129386553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.671 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds