Wall clock time and date at job start Tue Mar 31 2020 03:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39047 * 120.00226 * 179.97438 * 2 1 3 5 5 C 1.39310 * 119.90690 * 0.02562 * 4 2 1 6 6 C 1.36533 * 120.26719 * 179.97438 * 5 4 2 7 7 C 1.39853 * 120.08339 * 0.02562 * 6 5 4 8 8 C 1.47372 * 120.09538 * 179.97438 * 7 6 5 9 9 O 1.21605 * 119.99944 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99678 * 359.97438 * 8 7 6 11 11 C 1.46503 * 119.99914 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47126 * 180.02562 * 11 10 8 13 13 N 1.46496 * 109.46906 * 180.02562 * 12 11 10 14 14 C 1.36941 * 119.99933 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99879 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00292 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99775 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00395 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47112 * 89.99853 * 18 16 14 20 20 H 1.48501 * 109.47516 * 209.99658 * 18 16 14 21 21 H 1.48501 * 109.47038 * 329.99923 * 18 16 14 22 22 C 1.40064 * 119.81364 * 0.02562 * 7 6 5 23 23 F 1.35098 * 120.13413 * 180.02562 * 22 7 6 24 24 C 1.38008 * 119.73662 * 359.70058 * 22 7 6 25 25 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 26 26 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 27 27 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 28 28 H 1.09000 * 109.47202 * 89.99334 * 3 2 1 29 29 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 30 30 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 31 31 H 1.07990 * 119.86183 * 0.02562 * 5 4 2 32 32 H 1.07995 * 119.95535 * 179.97438 * 6 5 4 33 33 H 0.97003 * 120.00061 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.47078 * 300.00548 * 11 10 8 35 35 H 1.09002 * 109.46408 * 60.00595 * 11 10 8 36 36 H 1.08998 * 109.47351 * 300.00597 * 12 11 10 37 37 H 1.09006 * 109.46756 * 60.00257 * 12 11 10 38 38 H 0.96993 * 120.00477 * 359.97438 * 13 12 11 39 39 H 0.96999 * 120.00186 * 179.97438 * 17 16 14 40 40 H 1.07995 * 120.04529 * 180.29766 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1603 -1.2042 0.0005 5 6 1.4618 -2.4095 0.0005 6 6 2.1371 -3.5962 0.0005 7 6 3.5356 -3.6069 0.0011 8 6 4.2647 -4.8876 0.0016 9 8 5.4807 -4.8950 0.0026 10 7 3.5837 -6.0507 0.0022 11 6 4.3085 -7.3239 0.0022 12 6 3.3072 -8.4807 0.0022 13 7 4.0320 -9.7538 0.0028 14 6 3.3401 -10.9356 0.0024 15 1 2.2601 -10.9291 0.0020 16 6 4.0268 -12.1419 0.0035 17 7 5.3430 -12.1499 0.0044 18 14 3.0831 -13.7540 0.0036 19 1 2.8340 -14.1819 -1.3965 20 1 3.8788 -14.7935 0.7047 21 1 1.7861 -13.5682 0.7027 22 6 4.2413 -2.3971 0.0022 23 9 5.5923 -2.3999 0.0022 24 6 3.5511 -1.2020 -0.0036 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 -0.8900 -0.5138 27 1 -0.3633 0.8900 -0.5139 28 1 2.3791 1.5834 1.0277 29 1 3.1499 1.1384 -0.5137 30 1 1.6085 2.0284 -0.5138 31 1 0.3819 -2.4052 -0.0003 32 1 1.5905 -4.5276 0.0010 33 1 2.6137 -6.0448 0.0018 34 1 4.9345 -7.3856 -0.8880 35 1 4.9350 -7.3852 0.8920 36 1 2.6808 -8.4192 0.8921 37 1 2.6809 -8.4192 -0.8879 38 1 5.0019 -9.7598 0.0027 39 1 5.8229 -12.9929 0.0056 40 1 4.0902 -0.2662 -0.0076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129386553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:51 Heat of formation + Delta-G solvation = -52.280280 kcal Electronic energy + Delta-G solvation = -22570.272566 eV Core-core repulsion = 18913.225957 eV Total energy + Delta-G solvation = -3657.046609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.144 amu Computer time = 7.63 seconds Orbital eigenvalues (eV) -49.92802 -41.17976 -40.08542 -37.34382 -36.98856 -35.50932 -33.24571 -32.10816 -31.40060 -29.30871 -28.95819 -26.61573 -25.45167 -23.51131 -23.24047 -22.78916 -21.36074 -19.51866 -19.10138 -18.14487 -17.75559 -16.95329 -16.91022 -16.78195 -16.42604 -16.35760 -15.93323 -15.71501 -15.57304 -15.19629 -15.10481 -14.94703 -14.49229 -14.04314 -13.49689 -13.39299 -13.28393 -13.13818 -13.04746 -13.02245 -12.89122 -12.65798 -12.51050 -12.08101 -12.01234 -11.85326 -11.04447 -10.98102 -10.93350 -10.17301 -9.93952 -9.05902 -8.43345 -7.95497 -5.27333 -0.15144 0.24515 1.49182 1.52167 1.60547 1.82442 2.02017 2.07669 2.59119 2.74835 3.25547 3.38596 3.63049 3.72172 3.99027 4.03020 4.11791 4.16386 4.22178 4.25932 4.45382 4.46808 4.56621 4.57963 4.75415 4.85839 4.90687 4.94606 4.99386 5.08780 5.13198 5.14012 5.24515 5.36217 5.50009 5.61127 6.15561 6.24867 6.29006 6.52530 7.21141 7.30842 8.02680 8.25900 9.28342 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.002471 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.021240 B =11330.388306 C =12203.357981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.622 5.622 3 C 0.077 3.923 4 C 0.271 3.729 5 C -0.208 4.208 6 C 0.002 3.998 7 C -0.260 4.260 8 C 0.555 3.445 9 O -0.590 6.590 10 N -0.705 5.705 11 C 0.128 3.872 12 C 0.151 3.849 13 N -0.748 5.748 14 C -0.247 4.247 15 H 0.086 0.914 16 C -0.080 4.080 17 N -0.972 5.972 18 Si 0.982 3.018 19 H -0.286 1.286 20 H -0.297 1.297 21 H -0.264 1.264 22 C 0.182 3.818 23 F -0.140 7.140 24 C -0.255 4.255 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.416 0.584 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.373 0.627 39 H 0.252 0.748 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.929 31.571 -0.213 35.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.328 5.328 3 C -0.065 4.065 4 C 0.163 3.837 5 C -0.230 4.230 6 C -0.018 4.018 7 C -0.266 4.266 8 C 0.345 3.655 9 O -0.471 6.471 10 N -0.358 5.358 11 C 0.003 3.997 12 C 0.024 3.976 13 N -0.392 5.392 14 C -0.378 4.378 15 H 0.103 0.897 16 C -0.273 4.273 17 N -0.623 5.623 18 Si 0.810 3.190 19 H -0.213 1.213 20 H -0.224 1.224 21 H -0.188 1.188 22 C 0.161 3.839 23 F -0.118 7.118 24 C -0.279 4.279 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.186 0.814 32 H 0.179 0.821 33 H 0.254 0.746 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.205 0.795 39 H 0.061 0.939 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.345 31.684 -0.204 35.205 hybrid contribution 0.660 -1.117 0.018 1.297 sum -14.686 30.567 -0.186 33.912 Atomic orbital electron populations 1.22039 0.76888 1.04658 1.02743 1.46681 1.06856 1.03003 1.76247 1.21979 0.97843 0.84243 1.02463 1.17824 0.89811 0.87513 0.88584 1.20751 1.01895 0.89534 1.10853 1.20925 0.90105 1.00189 0.90574 1.19640 0.95608 0.90646 1.20756 1.18465 0.86751 0.84649 0.75630 1.90801 1.15658 1.88287 1.52397 1.45522 1.10994 1.04326 1.74969 1.21162 0.95022 0.82457 1.01009 1.20845 0.93482 0.83791 0.99505 1.42450 1.05790 1.01140 1.89783 1.19673 0.91760 0.84791 1.41577 0.89658 1.25722 0.96508 1.01585 1.03436 1.69852 1.07124 1.26067 1.59229 0.85022 0.77716 0.78785 0.77483 1.21262 1.22416 1.18850 1.17750 0.76325 0.93880 0.95962 1.91522 1.29994 1.97393 1.92908 1.20587 0.93704 0.96926 1.16674 0.91965 0.89878 0.89211 0.92247 0.91185 0.88801 0.81417 0.82096 0.74574 0.93027 0.93027 0.94136 0.94117 0.79546 0.93947 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.23 10.22 127.77 1.31 1.54 16 2 N -0.62 -5.42 3.39 -747.35 -2.53 -7.95 16 3 C 0.08 0.42 10.22 127.77 1.31 1.72 16 4 C 0.27 3.88 6.55 38.46 0.25 4.13 16 5 C -0.21 -2.61 9.13 22.13 0.20 -2.41 16 6 C 0.00 0.03 9.48 22.26 0.21 0.24 16 7 C -0.26 -6.85 5.88 -20.04 -0.12 -6.97 16 8 C 0.55 18.95 7.76 86.65 0.67 19.62 16 9 O -0.59 -26.14 15.33 -4.05 -0.06 -26.20 16 10 N -0.70 -20.89 5.50 -466.43 -2.57 -23.45 16 11 C 0.13 4.76 5.79 86.38 0.50 5.26 16 12 C 0.15 5.90 6.37 86.38 0.55 6.45 16 13 N -0.75 -39.00 5.60 -343.46 -1.92 -40.92 16 14 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 15 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 16 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 17 N -0.97 -61.08 13.06 21.65 0.28 -60.79 16 18 Si 0.98 46.17 29.55 68.60 2.03 48.20 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 C 0.18 4.95 7.28 22.66 0.16 5.11 16 23 F -0.14 -4.75 15.54 44.97 0.70 -4.05 16 24 C -0.26 -4.88 9.17 22.42 0.21 -4.67 16 25 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.08 0.14 6.17 -2.39 -0.01 0.12 16 27 H 0.09 -0.02 7.89 -2.38 -0.02 -0.04 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.45 6.16 -2.39 -0.01 0.43 16 30 H 0.09 0.11 7.89 -2.39 -0.02 0.10 16 31 H 0.17 0.96 6.10 -2.92 -0.02 0.95 16 32 H 0.16 1.73 6.39 -2.91 -0.02 1.71 16 33 H 0.42 8.79 6.49 -92.71 -0.60 8.19 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.37 21.15 7.67 -92.71 -0.71 20.44 16 39 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.15 2.36 6.11 -2.91 -0.02 2.34 16 Total: -1.00 -80.61 338.50 2.26 -78.36 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.22 Total: 23.96 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 6.56 Total: 12.85 kcal Atomic # 7 Polarization: -126.38 SS G_CDS: -6.74 Total: -133.12 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.06 Total: -26.20 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.70 Total: -4.05 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -80.61 2.26 -78.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129386553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.078 kcal (2) G-P(sol) polarization free energy of solvation -80.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.63 seconds