Wall clock time and date at job start Tue Mar 31 2020 04:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86808 * 119.99975 * 2 1 4 4 H 1.48505 * 109.47080 * 240.00066 * 3 2 1 5 5 H 1.48503 * 109.46852 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47023 * 119.99915 * 3 2 1 7 7 C 1.38954 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00390 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99943 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99723 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99772 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46828 * 180.02562 * 12 10 9 14 14 C 1.46907 * 111.00060 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47007 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46929 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47237 * 179.97438 * 16 15 14 18 18 C 1.34773 * 119.99969 * 179.72043 * 17 16 15 19 19 O 1.21281 * 120.00220 * 0.02562 * 18 17 16 20 20 C 1.50706 * 120.00080 * 180.02562 * 18 17 16 21 21 C 1.54639 * 111.03534 * 292.02766 * 20 18 17 22 22 C 1.51104 * 104.72225 * 217.33126 * 21 20 18 23 23 C 1.30525 * 111.10361 * 16.43876 * 22 21 20 24 24 C 1.51098 * 111.10534 * 359.97438 * 23 22 21 25 25 H 0.96997 * 119.99859 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00236 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47654 * 59.99762 * 12 10 9 28 28 H 1.09005 * 109.47187 * 299.99237 * 12 10 9 29 29 H 1.00902 * 110.99849 * 303.95067 * 13 12 10 30 30 H 1.09000 * 109.46801 * 59.99734 * 14 13 12 31 31 H 1.08994 * 109.47121 * 299.99926 * 14 13 12 32 32 H 1.09000 * 109.47441 * 60.00268 * 15 14 13 33 33 H 1.09002 * 109.47087 * 299.99714 * 15 14 13 34 34 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 35 35 H 1.08998 * 109.47454 * 300.00107 * 16 15 14 36 36 H 0.97005 * 119.99811 * 0.02562 * 17 16 15 37 37 H 1.08998 * 110.90874 * 56.03118 * 20 18 17 38 38 H 1.08996 * 110.38554 * 336.14404 * 21 20 18 39 39 H 1.09002 * 110.38790 * 98.51941 * 21 20 18 40 40 H 1.07999 * 124.44457 * 196.45615 * 22 21 20 41 41 H 1.08000 * 124.44479 * 180.02562 * 23 22 21 42 42 H 1.09001 * 110.38814 * 224.75144 * 24 23 22 43 43 H 1.09001 * 110.48306 * 102.42385 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9794 0.0007 14 6 1.4982 -7.2708 0.0008 15 6 2.5232 -8.4067 0.0009 16 6 1.7938 -9.7517 0.0003 17 7 2.7752 -10.8395 -0.0002 18 6 2.3601 -12.1216 0.0050 19 8 1.1740 -12.3750 0.0095 20 6 3.3696 -13.2406 0.0051 21 6 4.1390 -13.2941 -1.3353 22 6 4.3307 -14.7676 -1.6095 23 6 3.5294 -15.4904 -0.8751 24 6 2.6703 -14.6195 0.0117 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3906 -0.0002 27 1 0.6175 -4.9205 -0.8902 28 1 0.6170 -4.9209 0.8898 29 1 2.8340 -5.9124 -0.7802 30 1 0.8737 -7.3455 -0.8895 31 1 0.8730 -7.3450 0.8904 32 1 3.1480 -8.3323 0.8909 33 1 3.1481 -8.3324 -0.8891 34 1 1.1693 -9.8260 -0.8899 35 1 1.1686 -9.8264 0.8900 36 1 3.7239 -10.6368 0.0003 37 1 4.0553 -13.1458 0.8470 38 1 3.5512 -12.8334 -2.1291 39 1 5.1043 -12.7970 -1.2390 40 1 5.0380 -15.1699 -2.3196 41 1 3.4868 -16.5693 -0.8978 42 1 2.6368 -15.0239 1.0234 43 1 1.6630 -14.5358 -0.3964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156055478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:28 Heat of formation + Delta-G solvation = -92.308668 kcal Electronic energy + Delta-G solvation = -22079.901976 eV Core-core repulsion = 18544.579910 eV Total energy + Delta-G solvation = -3535.322065 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24227 -40.16136 -38.68986 -37.57314 -36.11898 -35.64148 -33.29916 -32.57206 -30.50539 -29.10980 -28.45127 -26.48559 -24.73298 -23.01625 -22.58681 -21.11523 -20.72104 -19.89969 -19.68538 -18.30028 -17.86010 -17.30598 -17.23467 -16.69370 -16.56832 -16.25943 -16.01741 -15.65240 -15.27666 -15.00796 -14.78575 -14.28023 -13.81777 -13.56345 -13.49298 -13.37767 -13.18051 -13.04522 -12.86937 -12.78080 -12.60516 -12.43102 -12.42486 -12.15766 -12.11486 -12.06324 -11.84843 -11.50007 -10.90445 -10.35636 -10.13033 -10.02034 -9.80232 -9.34181 -8.46499 -5.95649 1.36130 1.40442 1.42394 1.53471 1.58037 2.04879 2.12685 2.30164 2.94666 3.20686 3.47346 3.52460 3.63713 3.89574 4.00364 4.14716 4.16846 4.26844 4.33710 4.38441 4.48260 4.55595 4.58188 4.60581 4.70040 4.77026 4.78095 4.82487 4.92647 5.06452 5.16165 5.17888 5.21325 5.40692 5.43799 5.62521 5.87961 5.98198 6.09221 6.40790 6.52905 6.59779 7.12127 7.21426 7.55833 8.10830 8.70559 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.056320 B = 0.001731 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.041790 B =16172.879077 C =16518.628495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.683 5.683 14 C 0.062 3.938 15 C -0.114 4.114 16 C 0.126 3.874 17 N -0.716 5.716 18 C 0.518 3.482 19 O -0.586 6.586 20 C -0.113 4.113 21 C -0.088 4.088 22 C -0.170 4.170 23 C -0.172 4.172 24 C -0.094 4.094 25 H 0.278 0.722 26 H 0.396 0.604 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.346 0.654 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.417 0.583 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.079 0.921 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 -27.482 -1.975 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.069 4.069 13 N -0.316 5.316 14 C -0.067 4.067 15 C -0.153 4.153 16 C 0.001 3.999 17 N -0.368 5.368 18 C 0.306 3.694 19 O -0.466 6.466 20 C -0.135 4.135 21 C -0.126 4.126 22 C -0.188 4.188 23 C -0.189 4.189 24 C -0.131 4.131 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.164 0.836 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.254 0.746 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.098 0.902 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.459 -27.454 -1.287 28.021 hybrid contribution -0.359 1.044 -0.848 1.392 sum 5.100 -26.410 -2.135 26.982 Atomic orbital electron populations 1.69667 1.06863 1.29391 1.50164 1.26059 0.96550 1.02464 0.96182 0.84971 0.77739 0.76545 0.78966 1.19630 1.19519 1.19717 1.19658 0.92778 0.84058 1.50154 0.90211 1.41937 1.09351 1.04743 1.64985 1.20882 0.88275 0.86177 0.82242 1.90481 1.15814 1.87972 1.56714 1.21537 0.94068 0.88139 1.03112 1.60054 1.19127 1.00906 1.51488 1.21911 0.95876 0.87379 1.01539 1.21580 0.98296 0.91304 1.04082 1.21194 0.91460 0.85371 1.01872 1.45925 1.11344 1.05026 1.74469 1.20888 0.89478 0.84462 0.74576 1.90685 1.19798 1.84543 1.51571 1.22227 0.96741 0.92653 1.01832 1.21355 1.00866 0.96006 0.94335 1.23438 1.00175 0.94787 1.00373 1.23425 0.97073 1.00076 0.98360 1.21298 0.99014 0.92178 1.00633 0.91283 0.76970 0.91544 0.87873 0.83570 0.94131 0.90375 0.90181 0.90316 0.92121 0.92062 0.74640 0.85347 0.91220 0.87957 0.83820 0.84286 0.90224 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.64 13.05 21.66 0.28 -49.36 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.34 -19.16 9.68 84.04 0.81 -18.34 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -29.43 5.29 -306.99 -1.62 -31.05 16 10 C 0.44 20.70 7.82 87.66 0.69 21.39 16 11 O -0.62 -34.33 15.78 -3.05 -0.05 -34.37 16 12 C 0.06 2.15 6.17 85.56 0.53 2.68 16 13 N -0.68 -20.50 6.13 -517.93 -3.17 -23.68 16 14 C 0.06 1.32 5.69 86.30 0.49 1.81 16 15 C -0.11 -1.88 5.59 30.59 0.17 -1.71 16 16 C 0.13 2.12 5.67 86.38 0.49 2.61 16 17 N -0.72 -10.35 5.56 -463.05 -2.57 -12.93 16 18 C 0.52 9.73 7.06 87.66 0.62 10.35 16 19 O -0.59 -16.43 15.51 -3.03 -0.05 -16.47 16 20 C -0.11 -1.43 3.55 -10.43 -0.04 -1.47 16 21 C -0.09 -0.88 6.37 30.53 0.19 -0.69 16 22 C -0.17 -1.72 10.78 26.26 0.28 -1.43 16 23 C -0.17 -1.99 10.77 26.26 0.28 -1.71 16 24 C -0.09 -1.39 6.18 30.52 0.19 -1.20 16 25 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 26 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.10 3.17 8.14 -2.38 -0.02 3.15 16 29 H 0.35 10.72 8.43 -89.69 -0.76 9.96 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.42 3.62 8.47 -92.70 -0.79 2.84 16 37 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 0.86 7.88 -2.39 -0.02 0.84 16 39 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.14 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 1.39 6.95 -2.39 -0.02 1.38 16 Total: -1.00 -73.06 363.78 -1.22 -74.28 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -1.24 Total: 36.72 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.18 Total: 12.07 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -7.09 Total: -117.01 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -0.10 Total: -50.85 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -73.06 -1.22 -74.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156055478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.030 kcal (2) G-P(sol) polarization free energy of solvation -73.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds