Wall clock time and date at job start Tue Mar 31 2020 04:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86794 * 120.00241 * 2 1 4 4 H 1.48498 * 109.47375 * 269.99990 * 3 2 1 5 5 H 1.48509 * 109.47146 * 29.99991 * 3 2 1 6 6 H 1.48507 * 109.47402 * 149.99821 * 3 2 1 7 7 C 1.39950 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99917 * 164.05594 * 7 2 1 9 9 C 1.41013 * 120.00188 * 344.05652 * 7 2 1 10 10 C 1.41006 * 120.70552 * 334.81952 * 9 7 2 11 11 C 1.38008 * 118.28040 * 180.02562 * 10 9 7 12 12 C 1.38680 * 119.62750 * 0.02562 * 11 10 9 13 13 N 1.31966 * 121.44958 * 0.02562 * 12 11 10 14 14 C 1.32275 * 121.86564 * 359.97438 * 13 12 11 15 15 N 1.38085 * 119.90523 * 179.97438 * 14 13 12 16 16 C 1.46505 * 119.99964 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.47047 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.47080 * 64.99653 * 17 16 15 19 19 C 1.42902 * 113.99938 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47059 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.47398 * 65.00090 * 20 19 18 22 22 C 1.42892 * 114.00060 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.47422 * 179.97438 * 22 21 20 24 24 N 1.46904 * 109.46818 * 64.99507 * 23 22 21 25 25 H 0.96999 * 119.99342 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.85900 * 0.03820 * 10 9 7 27 27 H 1.07999 * 120.18418 * 180.29602 * 11 10 9 28 28 H 1.08001 * 119.27308 * 180.02562 * 12 11 10 29 29 H 0.97002 * 120.00322 * 179.97438 * 15 14 13 30 30 H 1.09000 * 109.46858 * 299.99384 * 16 15 14 31 31 H 1.09000 * 109.47140 * 59.99922 * 16 15 14 32 32 H 1.08993 * 109.47221 * 185.00038 * 17 16 15 33 33 H 1.09006 * 109.47232 * 304.99986 * 17 16 15 34 34 H 1.09005 * 109.46822 * 299.99812 * 19 18 17 35 35 H 1.08996 * 109.47301 * 60.00248 * 19 18 17 36 36 H 1.09000 * 109.46864 * 184.99962 * 20 19 18 37 37 H 1.08998 * 109.47027 * 304.99607 * 20 19 18 38 38 H 1.09002 * 109.46843 * 299.99472 * 22 21 20 39 39 H 1.08996 * 109.47476 * 59.99481 * 22 21 20 40 40 H 1.08992 * 109.47437 * 184.99484 * 23 22 21 41 41 H 1.08999 * 109.46599 * 305.00019 * 23 22 21 42 42 H 1.00899 * 110.99761 * 180.02562 * 24 23 22 43 43 H 1.00898 * 111.00414 * 303.95831 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.4903 2.0464 -1.4000 5 1 1.4402 2.6527 0.7001 6 1 3.5403 1.4401 0.7001 7 6 2.0084 -1.2120 0.0005 8 1 3.0573 -1.2302 -0.2564 9 6 1.3440 -2.4096 0.3365 10 6 0.1956 -2.3908 1.1545 11 6 -0.4148 -3.5922 1.4523 12 6 0.1103 -4.7719 0.9466 13 7 1.1866 -4.7749 0.1830 14 6 1.8175 -3.6577 -0.1389 15 7 2.9407 -3.7079 -0.9405 16 6 3.4317 -4.9971 -1.4337 17 6 4.6781 -4.7735 -2.2925 18 8 5.7311 -4.2545 -1.4778 19 6 6.9470 -4.0081 -2.1869 20 6 7.9982 -3.4579 -1.2209 21 8 8.3221 -4.4557 -0.2505 22 6 9.3001 -4.0412 0.7053 23 6 9.5670 -5.1818 1.6895 24 7 10.1758 -6.3122 0.9756 25 1 -0.4849 0.8401 0.0004 26 1 -0.1963 -1.4603 1.5378 27 1 -1.2990 -3.6131 2.0721 28 1 -0.3722 -5.7088 1.1830 29 1 3.4043 -2.8895 -1.1778 30 1 3.6828 -5.6377 -0.5883 31 1 2.6578 -5.4749 -2.0345 32 1 4.9915 -5.7206 -2.7315 33 1 4.4493 -4.0629 -3.0868 34 1 7.3077 -4.9392 -2.6240 35 1 6.7651 -3.2814 -2.9787 36 1 8.8958 -3.1868 -1.7767 37 1 7.6026 -2.5760 -0.7171 38 1 10.2248 -3.7819 0.1898 39 1 8.9311 -3.1716 1.2490 40 1 10.2453 -4.8372 2.4699 41 1 8.6269 -5.5005 2.1398 42 1 10.3616 -7.0791 1.6043 43 1 9.5951 -6.6087 0.2056 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170504966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:35 Heat of formation + Delta-G solvation = -64.410760 kcal Electronic energy + Delta-G solvation = -23374.992879 eV Core-core repulsion = 19840.880557 eV Total energy + Delta-G solvation = -3534.112321 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -38.70183 -38.36093 -37.47811 -34.79763 -34.30474 -33.90519 -30.82782 -30.33103 -29.38935 -27.72245 -27.01766 -25.22691 -22.60391 -22.51986 -22.05938 -21.09018 -20.40615 -17.20507 -17.19124 -16.96204 -16.52079 -16.24320 -15.84520 -15.60344 -15.00303 -14.94666 -14.47447 -14.30986 -13.89138 -13.52044 -13.39000 -13.03956 -12.79069 -12.42254 -12.29346 -12.08871 -11.87214 -11.62881 -11.43205 -11.38816 -11.27821 -11.08427 -10.91289 -10.79083 -10.51103 -9.72806 -9.71614 -9.52465 -9.26647 -8.93559 -8.89033 -8.02701 -7.84458 -6.75379 -6.43182 -4.18182 2.78228 3.07353 3.10805 3.16153 3.28735 3.52388 3.73319 3.95014 4.36129 4.49567 4.74577 4.82464 4.99656 5.07912 5.10086 5.22745 5.24853 5.36135 5.45377 5.47072 5.55264 5.59646 5.66812 5.69934 5.80114 6.15204 6.26467 6.43632 6.50481 6.82976 6.86212 6.94047 7.06632 7.17430 7.22308 7.23233 7.32574 7.72155 7.86918 8.06356 8.34513 8.61326 8.72329 8.83877 9.07585 9.85298 10.25062 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.003770 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.044444 B = 7425.346972 C = 8444.010448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.075 3.925 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.075 0.925 9 C 0.031 3.969 10 C -0.126 4.126 11 C -0.194 4.194 12 C 0.003 3.997 13 N -0.536 5.536 14 C 0.308 3.692 15 N -0.725 5.725 16 C 0.149 3.851 17 C 0.051 3.949 18 O -0.371 6.371 19 C 0.063 3.937 20 C 0.067 3.933 21 O -0.381 6.381 22 C 0.060 3.940 23 C 0.063 3.937 24 N -0.851 5.851 25 H 0.279 0.721 26 H 0.125 0.875 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.404 0.596 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.339 0.661 43 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.877 -4.897 -2.609 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.093 0.907 9 C 0.024 3.976 10 C -0.152 4.152 11 C -0.217 4.217 12 C -0.150 4.150 13 N -0.254 5.254 14 C 0.070 3.930 15 N -0.365 5.365 16 C 0.024 3.976 17 C -0.026 4.026 18 O -0.290 6.290 19 C -0.014 4.014 20 C -0.010 4.010 21 O -0.300 6.300 22 C -0.017 4.017 23 C -0.068 4.068 24 N -0.381 5.381 25 H 0.089 0.911 26 H 0.142 0.858 27 H 0.112 0.888 28 H 0.134 0.866 29 H 0.241 0.759 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.151 0.849 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.448 -5.356 -2.892 16.603 hybrid contribution -0.637 1.627 0.222 1.762 sum 14.810 -3.728 -2.670 15.504 Atomic orbital electron populations 1.69818 1.07431 1.28907 1.36557 1.25801 0.94701 1.00956 0.92686 0.86363 0.80602 0.80979 0.79052 1.19666 1.20197 1.18608 1.19138 0.96846 0.90882 1.41805 0.90746 1.17916 0.94639 0.91340 0.93696 1.21342 0.98065 0.96702 0.99105 1.21397 1.01320 0.94416 1.04520 1.21351 0.95499 0.96109 1.02069 1.66558 1.10921 1.29782 1.18136 1.18510 0.90235 0.89684 0.94596 1.43618 1.29577 1.06915 1.56367 1.20907 0.91591 0.88031 0.97085 1.22853 0.87995 0.97803 0.93957 1.88073 1.20379 1.85121 1.35430 1.22471 0.85223 0.99863 0.93816 1.22501 0.96160 0.91757 0.90581 1.87898 1.60151 1.39483 1.42466 1.22559 0.91434 0.96824 0.90858 1.21790 0.97887 0.91842 0.95287 1.58789 1.53054 1.11569 1.14736 0.91057 0.85758 0.88822 0.86579 0.75888 0.92494 0.91886 0.92621 0.93029 0.92805 0.91948 0.92110 0.92204 0.92748 0.92808 0.89894 0.94329 0.84909 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.76 10.93 55.55 0.61 -20.15 16 2 C 0.07 1.87 5.20 -17.32 -0.09 1.78 16 3 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 7 C -0.46 -11.89 8.52 -37.89 -0.32 -12.21 16 8 H 0.07 1.85 6.69 -52.48 -0.35 1.50 16 9 C 0.03 0.84 5.60 -106.47 -0.60 0.25 16 10 C -0.13 -3.35 8.79 -38.62 -0.34 -3.69 16 11 C -0.19 -4.72 10.08 -39.50 -0.40 -5.12 16 12 C 0.00 0.08 11.17 -17.33 -0.19 -0.12 16 13 N -0.54 -13.51 9.54 -11.87 -0.11 -13.63 16 14 C 0.31 7.85 7.52 -155.02 -1.17 6.68 16 15 N -0.72 -15.80 5.56 -59.97 -0.33 -16.13 16 16 C 0.15 2.70 6.06 -4.04 -0.02 2.67 16 17 C 0.05 0.72 6.07 37.16 0.23 0.95 16 18 O -0.37 -5.77 10.25 -40.07 -0.41 -6.18 16 19 C 0.06 0.74 6.32 37.16 0.23 0.97 16 20 C 0.07 0.75 6.32 37.16 0.23 0.98 16 21 O -0.38 -4.90 9.83 -40.07 -0.39 -5.29 16 22 C 0.06 0.63 6.28 37.16 0.23 0.87 16 23 C 0.06 0.61 7.21 -3.82 -0.03 0.58 16 24 N -0.85 -7.91 9.62 -10.37 -0.10 -8.01 16 25 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 26 H 0.12 3.38 6.25 -52.49 -0.33 3.05 16 27 H 0.09 2.01 8.06 -52.49 -0.42 1.58 16 28 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 29 H 0.40 8.62 6.68 -40.82 -0.27 8.35 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.34 2.51 9.08 -39.29 -0.36 2.15 16 43 H 0.35 3.43 8.55 -39.29 -0.34 3.09 16 LS Contribution 361.11 15.07 5.44 5.44 Total: -1.00 -30.68 361.11 -9.26 -39.93 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -6.70 Total: 15.85 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.23 Total: -5.40 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.06 Total: -57.92 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.80 Total: -11.47 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.68 -9.26 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170504966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.479 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds