Wall clock time and date at job start Tue Mar 31 2020 03:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34946 * 126.03961 * 2 1 4 4 C 1.35318 * 107.74849 * 180.15298 * 3 2 1 5 5 C 1.50697 * 126.04228 * 179.87144 * 4 3 2 6 6 C 1.52997 * 109.47466 * 269.71492 * 5 4 3 7 7 N 1.46505 * 109.47212 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99622 * 179.97438 * 7 6 5 9 9 O 1.21584 * 120.00541 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99489 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99511 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46708 * 180.02562 * 11 10 8 13 13 O 1.21296 * 120.00297 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00015 * 180.02562 * 12 11 10 15 15 C 1.37096 * 119.99970 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00507 * 359.97438 * 15 14 12 17 17 C 1.38956 * 119.99811 * 179.97438 * 15 14 12 18 18 N 1.31409 * 119.99937 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99879 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47090 * 59.99675 * 19 17 15 21 21 H 1.48498 * 109.46800 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46687 * 299.99517 * 19 17 15 23 23 C 1.39877 * 107.91832 * 359.60879 * 4 3 2 24 24 N 1.30837 * 108.20038 * 0.24140 * 23 4 3 25 25 H 1.09005 * 109.46575 * 270.25608 * 1 2 3 26 26 H 1.08998 * 109.47176 * 30.25723 * 1 2 3 27 27 H 1.08999 * 109.47228 * 150.26422 * 1 2 3 28 28 H 1.07999 * 126.12614 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47120 * 149.71244 * 5 4 3 30 30 H 1.08998 * 109.46862 * 29.72047 * 5 4 3 31 31 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 32 32 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 33 33 H 0.96996 * 119.99606 * 0.02562 * 7 6 5 34 34 H 0.97003 * 120.00377 * 0.02562 * 10 8 7 35 35 H 1.08994 * 109.47121 * 299.99693 * 11 10 8 36 36 H 1.08994 * 109.47503 * 60.00345 * 11 10 8 37 37 H 0.97000 * 120.00091 * 359.97438 * 14 12 11 38 38 H 0.97001 * 119.99576 * 180.02562 * 18 17 15 39 39 H 1.07995 * 125.89488 * 180.26062 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7680 1.5452 -0.0074 6 6 5.1825 1.8359 -1.4512 7 7 6.3723 2.6907 -1.4550 8 6 6.9200 3.0779 -2.6240 9 8 6.4265 2.7183 -3.6753 10 7 8.0150 3.8638 -2.6275 11 6 8.6101 4.2851 -3.8982 12 6 9.8141 5.1498 -3.6266 13 8 10.1426 5.3908 -2.4841 14 7 10.5254 5.6562 -4.6533 15 6 11.6211 6.4424 -4.4063 16 1 11.9140 6.6563 -3.3890 17 6 12.3547 6.9640 -5.4648 18 7 11.9986 6.7033 -6.7026 19 14 13.8473 8.0358 -5.1283 20 1 14.8454 7.2630 -4.3463 21 1 14.4508 8.4624 -6.4163 22 1 13.4321 9.2336 -4.3548 23 6 3.5346 -0.7322 0.0035 24 7 2.2891 -1.1328 0.0056 25 1 -0.3633 0.0046 1.0277 26 1 -0.3633 0.8876 -0.5178 27 1 -0.3633 -0.8923 -0.5097 28 1 1.9282 2.1193 -0.0004 29 1 5.5821 1.0364 0.5088 30 1 4.5442 2.4823 0.5022 31 1 4.3684 2.3447 -1.9675 32 1 5.4062 0.8987 -1.9607 33 1 6.7662 2.9772 -0.6163 34 1 8.4090 4.1504 -1.7887 35 1 8.9151 3.4060 -4.4657 36 1 7.8773 4.8520 -4.4723 37 1 10.2626 5.4638 -5.5670 38 1 12.5110 7.0672 -7.4415 39 1 4.4054 -1.3710 0.0068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323249886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:52 Heat of formation + Delta-G solvation = -20.183772 kcal Electronic energy + Delta-G solvation = -21944.831446 eV Core-core repulsion = 18309.096607 eV Total energy + Delta-G solvation = -3635.734839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.10568 -41.12516 -39.98131 -36.69997 -36.16052 -35.21913 -34.31401 -33.35212 -32.68868 -29.97376 -28.82216 -27.16242 -26.19849 -23.85130 -22.00761 -21.98049 -21.33063 -21.05419 -20.08233 -19.46551 -17.65412 -17.41346 -17.32199 -16.94298 -16.44797 -16.29245 -15.99257 -15.89554 -15.35896 -15.21101 -15.12547 -14.93738 -14.04941 -13.91182 -13.79307 -13.61625 -13.51413 -13.50874 -13.06795 -12.87682 -12.74130 -12.44510 -12.24158 -12.12054 -11.53698 -11.50890 -11.35921 -10.52519 -10.39046 -10.34728 -10.07722 -9.74332 -9.30310 -8.48493 -5.98728 0.97598 1.40246 1.44198 1.54262 1.60683 1.75084 1.91236 1.92876 2.17591 2.31195 3.09595 3.18774 3.40772 3.71643 4.02776 4.21255 4.25263 4.27837 4.36838 4.45193 4.47468 4.48819 4.50325 4.70681 4.76425 4.84063 4.94674 5.18996 5.35769 5.37302 5.41316 5.57173 5.73139 5.94265 6.03876 6.17476 6.50794 6.75802 7.05787 7.11208 7.46006 7.59846 7.97211 8.68145 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.059381 B = 0.001924 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.421850 B =14552.544289 C =14724.376295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.384 5.384 3 C 0.063 3.937 4 C -0.250 4.250 5 C -0.034 4.034 6 C 0.148 3.852 7 N -0.730 5.730 8 C 0.702 3.298 9 O -0.637 6.637 10 N -0.724 5.724 11 C 0.142 3.858 12 C 0.434 3.566 13 O -0.623 6.623 14 N -0.560 5.560 15 C -0.338 4.338 16 H 0.087 0.913 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.270 1.270 21 H -0.273 1.273 22 H -0.270 1.270 23 C 0.044 3.956 24 N -0.342 5.342 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.205 0.795 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.413 0.587 34 H 0.411 0.589 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.399 0.601 38 H 0.279 0.721 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.259 -9.955 13.711 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.166 5.166 3 C -0.084 4.084 4 C -0.262 4.262 5 C -0.073 4.073 6 C 0.024 3.976 7 N -0.387 5.387 8 C 0.402 3.598 9 O -0.519 6.519 10 N -0.382 5.382 11 C 0.013 3.987 12 C 0.221 3.779 13 O -0.511 6.511 14 N -0.195 5.195 15 C -0.467 4.467 16 H 0.105 0.895 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.195 1.195 23 C -0.141 4.141 24 N -0.164 5.164 25 H 0.105 0.895 26 H 0.131 0.869 27 H 0.105 0.895 28 H 0.222 0.778 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.249 0.751 34 H 0.249 0.751 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -21.393 -11.082 13.314 27.527 hybrid contribution 1.456 1.180 -0.019 1.875 sum -19.936 -9.902 13.295 25.928 Atomic orbital electron populations 1.22169 0.72274 1.05762 1.04557 1.48820 1.07932 1.03552 1.56306 1.22939 0.90694 0.94552 1.00188 1.20022 0.94869 0.93598 1.17705 1.19914 0.94308 0.99313 0.93774 1.21236 0.85185 0.92844 0.98354 1.44960 1.32112 1.55062 1.06555 1.15999 0.80093 0.78966 0.84763 1.90882 1.65837 1.62902 1.32244 1.44681 1.29847 1.53853 1.09810 1.20565 0.93196 0.98430 0.86527 1.20417 0.86841 0.85196 0.85405 1.90464 1.72760 1.65460 1.22434 1.41835 1.25490 1.43962 1.08250 1.19717 1.05134 1.27160 0.94706 0.89472 1.26139 1.01894 0.98954 0.94210 1.69680 1.41624 1.45384 0.98950 0.84916 0.77156 0.78103 0.77727 1.19506 1.19728 1.19458 1.24201 0.95369 0.95550 0.99004 1.77302 1.02694 1.10090 1.26342 0.89506 0.86885 0.89529 0.77844 0.89243 0.88828 0.92856 0.93278 0.75092 0.75108 0.89239 0.89143 0.76723 0.91109 0.78786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.47 127.77 1.47 2.11 16 2 N -0.38 -5.96 4.01 -369.57 -1.48 -7.44 16 3 C 0.06 0.83 11.40 83.54 0.95 1.78 16 4 C -0.25 -3.79 5.35 -20.14 -0.11 -3.90 16 5 C -0.03 -0.41 5.81 29.85 0.17 -0.24 16 6 C 0.15 2.84 5.66 86.38 0.49 3.32 16 7 N -0.73 -15.83 5.56 -478.53 -2.66 -18.49 16 8 C 0.70 22.25 8.57 179.05 1.53 23.78 16 9 O -0.64 -25.18 16.34 -3.98 -0.07 -25.24 16 10 N -0.72 -23.70 5.53 -482.30 -2.67 -26.36 16 11 C 0.14 5.24 6.15 85.63 0.53 5.76 16 12 C 0.43 19.99 7.85 87.66 0.69 20.68 16 13 O -0.62 -31.83 15.24 -3.08 -0.05 -31.88 16 14 N -0.56 -28.12 5.29 -306.97 -1.62 -29.74 16 15 C -0.34 -18.56 9.68 84.04 0.81 -17.75 16 16 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 17 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 18 N -0.92 -48.74 13.05 21.66 0.28 -48.46 16 19 Si 1.00 41.61 29.55 68.60 2.03 43.64 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 C 0.04 0.79 11.96 85.24 1.02 1.81 16 24 N -0.34 -7.25 12.58 -57.02 -0.72 -7.97 16 25 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 26 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.41 6.42 8.49 -92.71 -0.79 5.63 16 34 H 0.41 12.83 7.45 -92.71 -0.69 12.14 16 35 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 38 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 39 H 0.20 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -75.69 346.58 -0.03 -75.72 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: -1.10 Total: 38.99 kcal Atomic # 6 Polarization: 29.22 SS G_CDS: 8.02 Total: 37.24 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -8.87 Total: -138.47 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: -0.11 Total: -57.12 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -75.69 -0.03 -75.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323249886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.538 kcal (2) G-P(sol) polarization free energy of solvation -75.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds