Wall clock time and date at job start Tue Mar 31 2020 04:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86807 * 119.99953 * 2 1 4 4 H 1.48496 * 109.47176 * 269.99624 * 3 2 1 5 5 H 1.48500 * 109.47013 * 30.00299 * 3 2 1 6 6 H 1.48501 * 109.47017 * 149.99766 * 3 2 1 7 7 C 1.38946 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99883 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00270 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99407 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46756 * 179.97438 * 12 10 9 14 14 C 1.34782 * 120.00310 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99252 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00294 * 180.02562 * 14 13 12 17 17 C 1.53123 * 109.57574 * 60.30002 * 16 14 13 18 18 C 1.53034 * 109.27992 * 177.60215 * 17 16 14 19 19 N 1.46847 * 109.51345 * 300.80438 * 18 17 16 20 20 C 1.46895 * 110.99982 * 185.84805 * 19 18 17 21 21 C 1.53001 * 117.49790 * 248.62113 * 20 19 18 22 22 C 1.53006 * 60.00157 * 252.50752 * 21 20 19 23 23 C 1.46843 * 111.20124 * 61.74903 * 19 18 17 24 24 C 1.53042 * 109.52278 * 298.25596 * 23 19 18 25 25 H 0.97004 * 119.99775 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99724 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47336 * 59.99883 * 12 10 9 28 28 H 1.09000 * 109.47598 * 299.99688 * 12 10 9 29 29 H 0.96996 * 120.00339 * 0.02562 * 13 12 10 30 30 H 1.09003 * 109.52421 * 300.13098 * 16 14 13 31 31 H 1.08997 * 109.51083 * 57.64808 * 17 16 14 32 32 H 1.08998 * 109.48980 * 297.53740 * 17 16 14 33 33 H 1.09002 * 109.46271 * 180.79158 * 18 17 16 34 34 H 1.08994 * 109.46242 * 60.81457 * 18 17 16 35 35 H 1.09002 * 115.55182 * 34.32677 * 20 19 18 36 36 H 1.08993 * 117.50121 * 359.97438 * 21 20 19 37 37 H 1.08996 * 117.49842 * 145.02062 * 21 20 19 38 38 H 1.08995 * 117.50070 * 252.51168 * 22 21 20 39 39 H 1.08994 * 117.49688 * 107.48335 * 22 21 20 40 40 H 1.08993 * 109.46313 * 58.27251 * 23 19 18 41 41 H 1.09000 * 109.46480 * 178.25361 * 23 19 18 42 42 H 1.08997 * 109.50758 * 179.11703 * 24 23 19 43 43 H 1.08998 * 109.50897 * 299.20258 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1957 -5.9764 0.0027 14 6 1.7465 -7.2471 0.0038 15 8 0.5541 -7.4687 0.0039 16 6 2.7257 -8.3925 0.0048 17 6 3.6023 -8.3169 1.2580 18 6 4.5533 -9.5156 1.2826 19 7 3.7738 -10.7601 1.2834 20 6 4.6484 -11.9290 1.4464 21 6 4.8014 -12.8693 0.2491 22 6 3.9873 -13.3087 1.4678 23 6 2.9597 -10.8776 0.0670 24 6 1.9613 -9.7193 0.0059 25 1 -0.4850 0.8401 0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6173 -4.9212 -0.8880 28 1 0.6167 -4.9201 0.8919 29 1 3.1493 -5.7992 0.0030 30 1 3.3545 -8.3351 -0.8837 31 1 2.9704 -8.3352 2.1460 32 1 4.1812 -7.3934 1.2417 33 1 5.1692 -9.4723 2.1809 34 1 5.1941 -9.4890 0.4014 35 1 5.5202 -11.7788 2.0833 36 1 4.2528 -12.6208 -0.6593 37 1 5.7740 -13.3377 0.0981 38 1 4.4242 -14.0661 2.1185 39 1 2.9033 -13.3489 1.3609 40 1 3.6081 -10.8447 -0.8085 41 1 2.4180 -11.8233 0.0824 42 1 1.3678 -9.7980 -0.9049 43 1 1.3031 -9.7600 0.8738 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342728046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:07 Heat of formation + Delta-G solvation = -51.560094 kcal Electronic energy + Delta-G solvation = -23417.477216 eV Core-core repulsion = 19883.922141 eV Total energy + Delta-G solvation = -3533.555075 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.37259 -39.19011 -38.13583 -36.15115 -34.47600 -33.69263 -32.05079 -31.39135 -31.00900 -27.86467 -25.48392 -24.35175 -23.30227 -22.74710 -21.48186 -20.19787 -19.70064 -19.38676 -18.13594 -17.45131 -16.65649 -15.89376 -15.54370 -15.44430 -15.27990 -14.61247 -14.54497 -14.35938 -14.31402 -13.95115 -13.45470 -13.38235 -13.20724 -12.58368 -12.31207 -12.19803 -11.92868 -11.90434 -11.70217 -11.64547 -11.26093 -11.13605 -11.04263 -10.84274 -10.73064 -10.49416 -10.47045 -10.33054 -9.64993 -9.56878 -8.78616 -8.64635 -8.40978 -8.11548 -6.52677 -3.94806 2.82757 3.10761 3.20894 3.25381 3.31543 3.38441 3.70935 3.72765 4.10281 4.43545 4.49183 4.56985 4.64835 4.72298 4.80437 4.87128 5.01576 5.06452 5.15693 5.16797 5.31083 5.32255 5.38689 5.43960 5.50061 5.58825 5.66934 5.77147 5.79363 5.86703 5.94620 5.96475 6.03697 6.06573 6.22531 6.68833 6.78697 6.82522 7.44728 7.81650 7.90773 8.42517 8.47280 9.03252 9.37991 9.85758 10.64171 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.043296 B = 0.002439 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.554039 B =11476.290643 C =11930.753114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.707 5.707 14 C 0.516 3.484 15 O -0.549 6.549 16 C -0.106 4.106 17 C -0.110 4.110 18 C 0.060 3.940 19 N -0.507 5.507 20 C 0.024 3.976 21 C -0.223 4.223 22 C -0.172 4.172 23 C 0.052 3.948 24 C -0.095 4.095 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.410 0.590 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.928 -21.804 1.090 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C -0.020 4.020 13 N -0.361 5.361 14 C 0.302 3.698 15 O -0.427 6.427 16 C -0.128 4.128 17 C -0.148 4.148 18 C -0.067 4.067 19 N -0.229 5.229 20 C -0.086 4.086 21 C -0.262 4.262 22 C -0.210 4.210 23 C -0.076 4.076 24 C -0.134 4.134 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.248 0.752 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.403 -21.696 1.500 22.671 hybrid contribution 0.728 0.958 -0.744 1.414 sum 7.130 -20.738 0.755 21.943 Atomic orbital electron populations 1.69615 1.06016 1.28539 1.49277 1.25333 0.95677 0.99959 0.96789 0.85808 0.79226 0.80477 0.78488 1.20265 1.20785 1.19313 1.19727 0.93452 0.82001 1.48277 0.87680 1.41808 1.09495 1.04501 1.62586 1.19753 0.88291 0.85009 0.85576 1.90490 1.13718 1.86845 1.57419 1.20952 0.91965 0.85873 1.03184 1.45749 1.11516 1.04707 1.74098 1.20504 0.89519 0.83713 0.76088 1.90680 1.16847 1.84908 1.50223 1.21364 0.96952 0.94031 1.00437 1.21621 0.97774 0.97921 0.97512 1.22079 0.94777 0.88579 1.01296 1.61797 1.22696 1.00920 1.37489 1.22652 0.97860 0.87396 1.00658 1.23568 1.02381 1.06133 0.94162 1.23064 0.99897 0.97258 1.00795 1.22255 0.95486 0.99427 0.90421 1.21412 0.97035 0.91004 1.03908 0.91574 0.77029 0.89934 0.89881 0.75188 0.88834 0.90242 0.90271 0.90140 0.94310 0.86299 0.88295 0.88904 0.88518 0.88493 0.94291 0.90330 0.90647 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.31 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.11 2.96 7.16 -52.48 -0.38 2.59 16 9 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 10 C 0.43 9.77 7.85 -10.99 -0.09 9.69 16 11 O -0.60 -15.16 15.24 5.55 0.08 -15.07 16 12 C 0.11 1.99 6.15 -5.19 -0.03 1.96 16 13 N -0.71 -11.58 5.44 -61.47 -0.33 -11.92 16 14 C 0.52 7.96 7.16 -10.99 -0.08 7.89 16 15 O -0.55 -10.20 15.98 5.55 0.09 -10.11 16 16 C -0.11 -1.22 2.59 -91.65 -0.24 -1.46 16 17 C -0.11 -1.14 5.26 -26.65 -0.14 -1.28 16 18 C 0.06 0.53 5.44 -3.84 -0.02 0.51 16 19 N -0.51 -4.71 4.88 -226.70 -1.11 -5.81 16 20 C 0.02 0.19 6.11 -67.71 -0.41 -0.23 16 21 C -0.22 -1.56 9.58 -26.73 -0.26 -1.82 16 22 C -0.17 -1.22 9.94 -26.72 -0.27 -1.49 16 23 C 0.05 0.47 4.12 -3.83 -0.02 0.45 16 24 C -0.10 -1.05 4.68 -26.64 -0.12 -1.17 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.41 6.56 6.93 -40.82 -0.28 6.27 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.80 7.67 -51.93 -0.40 0.40 16 33 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 34 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.12 0.83 8.04 -51.93 -0.42 0.41 16 36 H 0.10 0.71 5.97 -51.93 -0.31 0.40 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.73 7.23 -51.93 -0.38 0.36 16 40 H 0.04 0.34 7.12 -51.93 -0.37 -0.03 16 41 H 0.08 0.67 6.42 -51.93 -0.33 0.33 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.02 8.04 -51.93 -0.42 0.61 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -30.72 348.79 -8.82 -39.53 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -6.54 Total: 14.27 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.91 Total: 5.20 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.77 Total: -54.53 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: 0.17 Total: -25.19 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.72 -8.82 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342728046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.027 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds