Wall clock time and date at job start Tue Mar 31 2020 04:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86807 * 119.99953 * 2 1 4 4 H 1.48496 * 109.47176 * 269.99624 * 3 2 1 5 5 H 1.48500 * 109.47013 * 30.00299 * 3 2 1 6 6 H 1.48501 * 109.47017 * 149.99766 * 3 2 1 7 7 C 1.38946 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99883 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00270 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99407 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46756 * 179.97438 * 12 10 9 14 14 C 1.34782 * 120.00310 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99252 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00294 * 180.02562 * 14 13 12 17 17 C 1.53123 * 109.57574 * 60.30002 * 16 14 13 18 18 C 1.53034 * 109.27992 * 177.60215 * 17 16 14 19 19 N 1.46847 * 109.51345 * 300.80438 * 18 17 16 20 20 C 1.46895 * 110.99982 * 185.84805 * 19 18 17 21 21 C 1.53001 * 117.49790 * 248.62113 * 20 19 18 22 22 C 1.53006 * 60.00157 * 252.50752 * 21 20 19 23 23 C 1.46843 * 111.20124 * 61.74903 * 19 18 17 24 24 C 1.53042 * 109.52278 * 298.25596 * 23 19 18 25 25 H 0.97004 * 119.99775 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99724 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47336 * 59.99883 * 12 10 9 28 28 H 1.09000 * 109.47598 * 299.99688 * 12 10 9 29 29 H 0.96996 * 120.00339 * 0.02562 * 13 12 10 30 30 H 1.09003 * 109.52421 * 300.13098 * 16 14 13 31 31 H 1.08997 * 109.51083 * 57.64808 * 17 16 14 32 32 H 1.08998 * 109.48980 * 297.53740 * 17 16 14 33 33 H 1.09002 * 109.46271 * 180.79158 * 18 17 16 34 34 H 1.08994 * 109.46242 * 60.81457 * 18 17 16 35 35 H 1.09002 * 115.55182 * 34.32677 * 20 19 18 36 36 H 1.08993 * 117.50121 * 359.97438 * 21 20 19 37 37 H 1.08996 * 117.49842 * 145.02062 * 21 20 19 38 38 H 1.08995 * 117.50070 * 252.51168 * 22 21 20 39 39 H 1.08994 * 117.49688 * 107.48335 * 22 21 20 40 40 H 1.08993 * 109.46313 * 58.27251 * 23 19 18 41 41 H 1.09000 * 109.46480 * 178.25361 * 23 19 18 42 42 H 1.08997 * 109.50758 * 179.11703 * 24 23 19 43 43 H 1.08998 * 109.50897 * 299.20258 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1957 -5.9764 0.0027 14 6 1.7465 -7.2471 0.0038 15 8 0.5541 -7.4687 0.0039 16 6 2.7257 -8.3925 0.0048 17 6 3.6023 -8.3169 1.2580 18 6 4.5533 -9.5156 1.2826 19 7 3.7738 -10.7601 1.2834 20 6 4.6484 -11.9290 1.4464 21 6 4.8014 -12.8693 0.2491 22 6 3.9873 -13.3087 1.4678 23 6 2.9597 -10.8776 0.0670 24 6 1.9613 -9.7193 0.0059 25 1 -0.4850 0.8401 0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6173 -4.9212 -0.8880 28 1 0.6167 -4.9201 0.8919 29 1 3.1493 -5.7992 0.0030 30 1 3.3545 -8.3351 -0.8837 31 1 2.9704 -8.3352 2.1460 32 1 4.1812 -7.3934 1.2417 33 1 5.1692 -9.4723 2.1809 34 1 5.1941 -9.4890 0.4014 35 1 5.5202 -11.7788 2.0833 36 1 4.2528 -12.6208 -0.6593 37 1 5.7740 -13.3377 0.0981 38 1 4.4242 -14.0661 2.1185 39 1 2.9033 -13.3489 1.3609 40 1 3.6081 -10.8447 -0.8085 41 1 2.4180 -11.8233 0.0824 42 1 1.3678 -9.7980 -0.9049 43 1 1.3031 -9.7600 0.8738 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342728046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:05 Heat of formation + Delta-G solvation = -73.741599 kcal Electronic energy + Delta-G solvation = -23418.439078 eV Core-core repulsion = 19883.922141 eV Total energy + Delta-G solvation = -3534.516937 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44650 -40.37865 -39.70212 -36.94199 -36.26346 -35.32119 -33.39771 -32.84988 -31.82388 -29.38793 -26.84584 -25.76776 -24.14839 -23.29510 -22.33650 -21.39144 -21.21320 -20.39291 -20.04877 -18.68728 -17.60910 -17.23039 -16.97894 -16.73744 -16.38963 -16.26930 -15.75861 -15.71911 -15.21910 -15.16203 -14.77141 -14.54771 -14.06550 -13.96185 -13.58377 -13.55155 -13.27341 -13.00645 -12.90858 -12.58496 -12.52184 -12.46479 -12.13019 -11.98562 -11.79760 -11.57718 -11.55208 -11.52230 -11.14770 -10.81103 -10.56478 -10.20512 -10.08977 -9.05265 -8.51789 -6.02163 1.35905 1.42512 1.55160 1.57769 1.90014 2.03149 2.31765 2.70150 3.10796 3.12495 3.15297 3.57071 3.71150 3.80273 3.95257 4.08215 4.11639 4.18233 4.25741 4.26892 4.37829 4.41580 4.43560 4.47496 4.65669 4.71850 4.79423 4.81900 4.88676 4.96489 5.12664 5.13105 5.17287 5.24762 5.27485 5.35746 5.38230 5.90862 6.11197 6.17554 6.44840 6.53114 7.02465 7.16476 7.43356 7.93029 8.65083 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.043296 B = 0.002439 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.554039 B =11476.290643 C =11930.753114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.433 3.567 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.706 5.706 14 C 0.517 3.483 15 O -0.581 6.581 16 C -0.098 4.098 17 C -0.106 4.106 18 C 0.064 3.936 19 N -0.521 5.521 20 C 0.013 3.987 21 C -0.217 4.217 22 C -0.173 4.173 23 C 0.059 3.941 24 C -0.091 4.091 25 H 0.280 0.720 26 H 0.398 0.602 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.414 0.586 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.078 -22.569 0.937 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.196 5.196 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.360 5.360 14 C 0.305 3.695 15 O -0.461 6.461 16 C -0.119 4.119 17 C -0.144 4.144 18 C -0.063 4.063 19 N -0.244 5.244 20 C -0.096 4.096 21 C -0.256 4.256 22 C -0.211 4.211 23 C -0.069 4.069 24 C -0.130 4.130 25 H 0.089 0.911 26 H 0.232 0.768 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.252 0.748 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.147 0.853 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.554 -22.486 1.347 23.759 hybrid contribution 0.350 1.123 -0.685 1.361 sum 7.903 -21.363 0.662 22.788 Atomic orbital electron populations 1.69682 1.07033 1.29641 1.49291 1.26151 0.96555 1.02756 0.95799 0.84856 0.77918 0.76422 0.78721 1.19535 1.19694 1.19381 1.19740 0.92975 0.83509 1.50370 0.89498 1.41867 1.09593 1.04675 1.63433 1.20409 0.88135 0.85879 0.83542 1.90466 1.15076 1.87529 1.57999 1.20769 0.91867 0.84170 1.04020 1.45775 1.11294 1.04599 1.74365 1.21199 0.89749 0.83937 0.74637 1.90666 1.18539 1.85269 1.51633 1.21398 0.96319 0.92303 1.01927 1.21589 0.97639 0.99104 0.96084 1.22053 0.94331 0.87674 1.02279 1.61773 1.23401 1.01610 1.37570 1.22757 0.98161 0.87051 1.01605 1.23585 1.02779 1.05456 0.93759 1.23116 0.99618 0.97171 1.01217 1.22169 0.95192 0.98580 0.90916 1.21358 0.97228 0.91579 1.02791 0.91072 0.76751 0.88979 0.89069 0.74787 0.86850 0.91759 0.89926 0.89092 0.93376 0.85338 0.88523 0.87868 0.87365 0.89214 0.93316 0.89828 0.90957 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 1.00 41.60 29.55 68.60 2.03 43.62 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.34 -18.48 9.68 84.04 0.81 -17.67 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.12 5.29 -306.98 -1.62 -29.74 16 10 C 0.43 19.89 7.85 87.66 0.69 20.57 16 11 O -0.62 -31.75 15.24 -3.06 -0.05 -31.80 16 12 C 0.12 4.37 6.15 85.63 0.53 4.90 16 13 N -0.71 -22.72 5.44 -466.79 -2.54 -25.26 16 14 C 0.52 15.65 7.16 87.65 0.63 16.28 16 15 O -0.58 -21.53 15.98 -3.04 -0.05 -21.58 16 16 C -0.10 -2.14 2.59 -11.46 -0.03 -2.17 16 17 C -0.11 -2.06 5.26 30.65 0.16 -1.90 16 18 C 0.06 1.01 5.44 86.32 0.47 1.48 16 19 N -0.52 -8.78 4.88 -871.13 -4.25 -13.03 16 20 C 0.01 0.18 6.11 44.92 0.27 0.46 16 21 C -0.22 -2.54 9.58 30.60 0.29 -2.24 16 22 C -0.17 -2.15 9.94 30.60 0.30 -1.84 16 23 C 0.06 0.97 4.12 86.33 0.36 1.33 16 24 C -0.09 -1.93 4.68 30.65 0.14 -1.79 16 25 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 26 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 27 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 28 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.41 12.92 6.93 -92.71 -0.64 12.28 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.55 7.67 -2.39 -0.02 1.53 16 33 H 0.09 1.26 8.07 -2.39 -0.02 1.24 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 35 H 0.13 1.48 8.04 -2.39 -0.02 1.46 16 36 H 0.10 1.18 5.97 -2.39 -0.01 1.17 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.24 7.23 -2.39 -0.02 1.22 16 40 H 0.05 0.73 7.12 -2.39 -0.02 0.71 16 41 H 0.08 1.31 6.42 -2.39 -0.02 1.29 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.53 8.04 -2.39 -0.02 1.51 16 Total: -1.00 -65.10 348.79 -1.44 -66.54 By element: Atomic # 1 Polarization: 42.77 SS G_CDS: -0.34 Total: 42.43 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 5.09 Total: 17.24 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -8.12 Total: -116.46 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -0.10 Total: -53.38 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -65.10 -1.44 -66.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342728046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.205 kcal (2) G-P(sol) polarization free energy of solvation -65.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds