Wall clock time and date at job start Tue Mar 31 2020 03:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46706 * 2 1 4 4 N 1.46490 * 109.47569 * 239.99565 * 2 1 3 5 5 C 1.36938 * 119.99960 * 84.99841 * 4 2 1 6 6 H 1.08003 * 119.99923 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00292 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00152 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99788 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46764 * 269.99761 * 9 7 5 11 11 H 1.48496 * 109.46972 * 29.99760 * 9 7 5 12 12 H 1.48497 * 109.47084 * 150.00057 * 9 7 5 13 13 C 1.53001 * 109.47040 * 119.99534 * 2 1 3 14 14 H 1.09002 * 109.51157 * 299.90140 * 13 2 1 15 15 C 1.53293 * 109.51251 * 179.74826 * 13 2 1 16 16 N 1.47150 * 108.38394 * 187.77247 * 15 13 2 17 17 C 1.34777 * 120.98330 * 230.51205 * 16 15 13 18 18 O 1.21614 * 120.00156 * 359.47259 * 17 16 15 19 19 C 1.47239 * 119.99727 * 179.47200 * 17 16 15 20 20 C 1.37006 * 127.18646 * 207.08391 * 19 17 16 21 21 N 1.33314 * 106.37212 * 179.97438 * 20 19 17 22 22 N 1.28514 * 109.44021 * 0.02562 * 21 20 19 23 23 N 1.28713 * 110.63529 * 359.75447 * 22 21 20 24 24 H 0.96999 * 126.03054 * 180.27033 * 23 22 21 25 25 C 1.47155 * 118.03551 * 50.53645 * 16 15 13 26 26 C 1.53291 * 108.38120 * 309.46439 * 25 16 15 27 27 O 1.42955 * 109.51299 * 59.99860 * 13 2 1 28 28 H 1.09007 * 109.47314 * 300.00620 * 1 2 3 29 29 H 1.09002 * 109.47292 * 60.00182 * 1 2 3 30 30 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 31 31 H 0.96992 * 120.00231 * 265.00548 * 4 2 1 32 32 H 0.97005 * 119.99665 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.68409 * 307.49819 * 15 13 2 34 34 H 1.09002 * 109.68391 * 68.05428 * 15 13 2 35 35 H 1.08007 * 126.81571 * 359.93023 * 20 19 17 36 36 H 1.08998 * 109.68252 * 189.73923 * 25 16 15 37 37 H 1.08999 * 109.68060 * 69.19016 * 25 16 15 38 38 H 1.09001 * 109.51571 * 292.37306 * 26 25 16 39 39 H 1.09003 * 109.55235 * 172.25026 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1492 -0.0076 -2.3756 6 1 1.8927 1.0404 -2.4241 7 6 2.6115 -0.6621 -3.5091 8 7 2.7377 -0.0054 -4.6428 9 14 3.0545 -2.4749 -3.4255 10 1 4.4871 -2.6180 -3.0616 11 1 2.2141 -3.1430 -2.3995 12 1 2.8146 -3.1047 -4.7487 13 6 2.0400 -0.7212 1.2493 14 1 1.6784 -0.2067 2.1397 15 6 3.5729 -0.7272 1.2471 16 7 4.0352 -1.5827 2.3516 17 6 4.9543 -1.1414 3.2330 18 8 5.4214 -0.0246 3.1167 19 6 5.3928 -2.0115 4.3369 20 6 5.8750 -1.6204 5.5582 21 7 6.1434 -2.7389 6.2320 22 7 5.8572 -3.7572 5.5020 23 7 5.3995 -3.3816 4.3591 24 1 5.1116 -3.9655 3.6400 25 6 3.4647 -2.9344 2.4649 26 6 1.9371 -2.8207 2.4077 27 8 1.5639 -2.0691 1.2503 28 1 -0.3634 0.5140 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.2490 -1.6317 -1.1524 32 1 3.0604 -0.4629 -5.4350 33 1 3.9371 -1.1229 0.2991 34 1 3.9442 0.2877 1.3888 35 1 6.0113 -0.6069 5.9059 36 1 3.7644 -3.3811 3.4129 37 1 3.8181 -3.5523 1.6394 38 1 1.5759 -2.3143 3.3028 39 1 1.4990 -3.8173 2.3515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485641135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:31 Heat of formation + Delta-G solvation = 60.563806 kcal Electronic energy + Delta-G solvation = -24536.706803 eV Core-core repulsion = 20904.473442 eV Total energy + Delta-G solvation = -3632.233361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.83974 -40.55266 -38.68080 -36.01589 -35.10068 -33.86227 -32.46617 -31.82949 -30.64436 -29.08491 -28.18765 -24.95216 -24.63049 -23.39427 -23.20651 -22.30839 -20.91608 -19.97549 -18.58360 -17.80932 -17.52558 -16.90794 -16.60448 -16.22596 -15.65624 -15.20092 -14.94985 -14.64770 -14.48026 -14.37262 -13.75517 -13.56579 -13.05742 -12.65156 -12.55370 -12.46317 -12.19608 -11.90591 -11.63944 -11.47494 -11.14979 -11.06303 -10.95686 -10.76577 -10.66118 -10.29431 -10.21325 -10.09261 -9.92646 -9.62973 -9.05577 -8.82091 -7.32977 -5.81893 -3.17730 0.51791 1.85651 1.97524 2.32709 2.66486 3.31551 3.36285 3.40560 3.56189 3.70238 4.13425 4.27533 4.34230 4.54199 4.57479 4.66355 4.76683 4.89779 4.99733 5.10525 5.30930 5.36959 5.41209 5.49327 5.57244 5.67687 5.87110 6.01168 6.08624 6.16151 6.18732 6.38060 6.61614 6.81469 6.95520 7.10964 7.56368 7.84481 7.94167 8.37062 9.15864 9.87611 10.07952 11.36307 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021379 B = 0.004295 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.399277 B = 6517.192858 C = 6765.282133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.189 3.811 3 H 0.072 0.928 4 N -0.742 5.742 5 C -0.245 4.245 6 H 0.091 0.909 7 C 0.008 3.992 8 N -0.932 5.932 9 Si 0.879 3.121 10 H -0.286 1.286 11 H -0.273 1.273 12 H -0.291 1.291 13 C 0.073 3.927 14 H 0.064 0.936 15 C 0.086 3.914 16 N -0.606 5.606 17 C 0.593 3.407 18 O -0.507 6.507 19 C -0.058 4.058 20 C 0.029 3.971 21 N -0.267 5.267 22 N -0.052 5.052 23 N -0.380 5.380 24 H 0.453 0.547 25 C 0.050 3.950 26 C 0.050 3.950 27 O -0.359 6.359 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.366 0.634 32 H 0.260 0.740 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.205 0.795 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 -7.100 19.105 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.078 3.922 3 H 0.090 0.910 4 N -0.386 5.386 5 C -0.375 4.375 6 H 0.109 0.891 7 C -0.188 4.188 8 N -0.580 5.580 9 Si 0.709 3.291 10 H -0.213 1.213 11 H -0.199 1.199 12 H -0.218 1.218 13 C 0.014 3.986 14 H 0.082 0.918 15 C -0.035 4.035 16 N -0.340 5.340 17 C 0.377 3.623 18 O -0.380 6.380 19 C -0.192 4.192 20 C -0.130 4.130 21 N -0.132 5.132 22 N -0.034 5.034 23 N -0.112 5.112 24 H 0.306 0.694 25 C -0.074 4.074 26 C -0.028 4.028 27 O -0.277 6.277 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.200 0.800 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.222 0.778 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.348 -7.480 19.660 21.078 hybrid contribution 0.019 -0.901 -1.036 1.373 sum 1.367 -8.381 18.623 20.468 Atomic orbital electron populations 1.22324 0.97853 1.01628 1.00339 1.20244 0.93074 0.94961 0.83880 0.91046 1.42739 1.79436 1.09618 1.06838 1.19075 1.37108 0.95517 0.85768 0.89075 1.24641 1.01375 0.97278 0.95521 1.69696 1.52438 1.35563 1.00263 0.86626 0.78310 0.87153 0.77027 1.21282 1.19932 1.21769 1.23059 0.91825 0.83314 1.00450 0.91765 1.22596 0.95261 0.96908 0.88766 1.48172 1.40983 1.15740 1.29154 1.16824 0.79613 0.85820 0.80007 1.90896 1.55484 1.19029 1.72584 1.22393 1.12484 0.83802 1.00528 1.23920 0.99044 1.00285 0.89717 1.74993 1.17770 0.95674 1.24805 1.78222 1.12361 1.22092 0.90678 1.46404 1.43222 1.06421 1.15171 0.69434 1.22919 0.97384 0.84565 1.02503 1.22854 0.91631 0.98150 0.90147 1.88116 1.75092 1.23895 1.40576 0.94433 0.92135 0.92666 0.80036 0.93030 0.88447 0.87396 0.77835 0.90090 0.89070 0.92558 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.35 37.16 0.35 -2.32 16 2 C 0.19 3.29 2.73 -67.94 -0.19 3.10 16 3 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 4 N -0.74 -16.24 4.09 -53.43 -0.22 -16.46 16 5 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 6 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 7 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 8 N -0.93 -28.54 13.97 55.49 0.78 -27.77 16 9 Si 0.88 21.33 27.74 -169.99 -4.71 16.61 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.27 6.52 56.52 0.37 -5.91 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 C 0.07 1.02 2.53 -26.58 -0.07 0.96 16 14 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 15 C 0.09 1.22 5.86 -3.54 -0.02 1.20 16 16 N -0.61 -6.98 3.02 -173.62 -0.52 -7.50 16 17 C 0.59 7.27 7.67 -12.60 -0.10 7.18 16 18 O -0.51 -7.89 16.49 5.27 0.09 -7.80 16 19 C -0.06 -0.59 6.51 -82.33 -0.54 -1.12 16 20 C 0.03 0.30 11.96 -17.36 -0.21 0.09 16 21 N -0.27 -3.06 12.35 30.47 0.38 -2.68 16 22 N -0.05 -0.54 13.35 60.35 0.81 0.26 16 23 N -0.38 -3.15 5.79 33.31 0.19 -2.96 16 24 H 0.45 2.40 6.39 -190.33 -1.22 1.18 16 25 C 0.05 0.42 5.77 -3.53 -0.02 0.40 16 26 C 0.05 0.46 6.98 37.31 0.26 0.72 16 27 O -0.36 -4.93 9.22 -35.23 -0.32 -5.25 16 28 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.94 7.68 -51.93 -0.40 0.54 16 31 H 0.37 8.04 5.06 -40.82 -0.21 7.84 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.10 1.61 7.26 -51.93 -0.38 1.23 16 34 H 0.11 1.61 7.08 -51.93 -0.37 1.24 16 35 H 0.20 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.08 0.47 3.99 -51.93 -0.21 0.26 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 320.85 15.07 4.84 4.84 Total: -1.00 -33.51 320.85 -5.23 -38.75 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.74 Total: 6.33 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.78 Total: 3.64 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 1.41 Total: -57.11 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.24 Total: -13.05 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.51 -5.23 -38.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.312 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds