Wall clock time and date at job start Tue Mar 31 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46706 * 2 1 4 4 N 1.46490 * 109.47569 * 239.99565 * 2 1 3 5 5 C 1.36938 * 119.99960 * 84.99841 * 4 2 1 6 6 H 1.08003 * 119.99923 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00292 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00152 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99788 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46764 * 269.99761 * 9 7 5 11 11 H 1.48496 * 109.46972 * 29.99760 * 9 7 5 12 12 H 1.48497 * 109.47084 * 150.00057 * 9 7 5 13 13 C 1.53001 * 109.47040 * 119.99534 * 2 1 3 14 14 H 1.09002 * 109.51157 * 299.90140 * 13 2 1 15 15 C 1.53293 * 109.51251 * 179.74826 * 13 2 1 16 16 N 1.47150 * 108.38394 * 187.77247 * 15 13 2 17 17 C 1.34777 * 120.98330 * 230.51205 * 16 15 13 18 18 O 1.21614 * 120.00156 * 359.47259 * 17 16 15 19 19 C 1.47239 * 119.99727 * 179.47200 * 17 16 15 20 20 C 1.37006 * 127.18646 * 207.08391 * 19 17 16 21 21 N 1.33314 * 106.37212 * 179.97438 * 20 19 17 22 22 N 1.28514 * 109.44021 * 0.02562 * 21 20 19 23 23 N 1.28713 * 110.63529 * 359.75447 * 22 21 20 24 24 H 0.96999 * 126.03054 * 180.27033 * 23 22 21 25 25 C 1.47155 * 118.03551 * 50.53645 * 16 15 13 26 26 C 1.53291 * 108.38120 * 309.46439 * 25 16 15 27 27 O 1.42955 * 109.51299 * 59.99860 * 13 2 1 28 28 H 1.09007 * 109.47314 * 300.00620 * 1 2 3 29 29 H 1.09002 * 109.47292 * 60.00182 * 1 2 3 30 30 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 31 31 H 0.96992 * 120.00231 * 265.00548 * 4 2 1 32 32 H 0.97005 * 119.99665 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.68409 * 307.49819 * 15 13 2 34 34 H 1.09002 * 109.68391 * 68.05428 * 15 13 2 35 35 H 1.08007 * 126.81571 * 359.93023 * 20 19 17 36 36 H 1.08998 * 109.68252 * 189.73923 * 25 16 15 37 37 H 1.08999 * 109.68060 * 69.19016 * 25 16 15 38 38 H 1.09001 * 109.51571 * 292.37306 * 26 25 16 39 39 H 1.09003 * 109.55235 * 172.25026 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1492 -0.0076 -2.3756 6 1 1.8927 1.0404 -2.4241 7 6 2.6115 -0.6621 -3.5091 8 7 2.7377 -0.0054 -4.6428 9 14 3.0545 -2.4749 -3.4255 10 1 4.4871 -2.6180 -3.0616 11 1 2.2141 -3.1430 -2.3995 12 1 2.8146 -3.1047 -4.7487 13 6 2.0400 -0.7212 1.2493 14 1 1.6784 -0.2067 2.1397 15 6 3.5729 -0.7272 1.2471 16 7 4.0352 -1.5827 2.3516 17 6 4.9543 -1.1414 3.2330 18 8 5.4214 -0.0246 3.1167 19 6 5.3928 -2.0115 4.3369 20 6 5.8750 -1.6204 5.5582 21 7 6.1434 -2.7389 6.2320 22 7 5.8572 -3.7572 5.5020 23 7 5.3995 -3.3816 4.3591 24 1 5.1116 -3.9655 3.6400 25 6 3.4647 -2.9344 2.4649 26 6 1.9371 -2.8207 2.4077 27 8 1.5639 -2.0691 1.2503 28 1 -0.3634 0.5140 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.2490 -1.6317 -1.1524 32 1 3.0604 -0.4629 -5.4350 33 1 3.9371 -1.1229 0.2991 34 1 3.9442 0.2877 1.3888 35 1 6.0113 -0.6069 5.9059 36 1 3.7644 -3.3811 3.4129 37 1 3.8181 -3.5523 1.6394 38 1 1.5759 -2.3143 3.3028 39 1 1.4990 -3.8173 2.3515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485641135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:30 Heat of formation + Delta-G solvation = 34.111695 kcal Electronic energy + Delta-G solvation = -24537.853852 eV Core-core repulsion = 20904.473442 eV Total energy + Delta-G solvation = -3633.380410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.62362 -41.52694 -39.73682 -37.37118 -36.20697 -34.70200 -34.21568 -32.76864 -31.94724 -30.57058 -29.18956 -26.11530 -25.45754 -25.12093 -24.00687 -23.31169 -21.84888 -21.31990 -19.91420 -19.26686 -18.37673 -17.87569 -17.57370 -17.26578 -16.66478 -16.38369 -16.06940 -15.99868 -15.49699 -15.38713 -15.12317 -14.70573 -14.46910 -14.28559 -13.77909 -13.49195 -13.34112 -13.25282 -12.86260 -12.62356 -12.51291 -12.43309 -12.10985 -11.94879 -11.81623 -11.76250 -11.73573 -11.34561 -11.20481 -10.99124 -10.74413 -9.84331 -9.26966 -7.98809 -5.30925 -0.29192 1.04609 1.19463 1.37511 1.41093 1.44974 1.49198 1.80937 2.50777 2.65159 2.90088 3.33799 3.37037 3.49797 3.58687 3.68610 3.81813 3.84517 3.92708 3.99873 4.11588 4.16092 4.46943 4.54214 4.63425 4.72563 4.76718 4.84157 4.89013 5.00366 5.05949 5.21561 5.47337 5.57623 5.81546 5.91370 6.13332 6.26372 6.62017 7.05885 7.12495 7.88094 8.08641 9.22921 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021379 B = 0.004295 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.399277 B = 6517.192858 C = 6765.282133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.178 3.822 3 H 0.064 0.936 4 N -0.742 5.742 5 C -0.222 4.222 6 H 0.059 0.941 7 C -0.064 4.064 8 N -0.986 5.986 9 Si 0.948 3.052 10 H -0.281 1.281 11 H -0.249 1.249 12 H -0.301 1.301 13 C 0.089 3.911 14 H 0.087 0.913 15 C 0.091 3.909 16 N -0.603 5.603 17 C 0.597 3.403 18 O -0.546 6.546 19 C -0.061 4.061 20 C 0.033 3.967 21 N -0.290 5.290 22 N -0.055 5.055 23 N -0.358 5.358 24 H 0.466 0.534 25 C 0.048 3.952 26 C 0.044 3.956 27 O -0.380 6.380 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.369 0.631 32 H 0.255 0.745 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.221 0.779 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.413 -9.461 21.662 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.069 3.931 3 H 0.082 0.918 4 N -0.386 5.386 5 C -0.353 4.353 6 H 0.077 0.923 7 C -0.255 4.255 8 N -0.637 5.637 9 Si 0.776 3.224 10 H -0.207 1.207 11 H -0.173 1.173 12 H -0.228 1.228 13 C 0.030 3.970 14 H 0.105 0.895 15 C -0.031 4.031 16 N -0.336 5.336 17 C 0.383 3.617 18 O -0.422 6.422 19 C -0.195 4.195 20 C -0.127 4.127 21 N -0.154 5.154 22 N -0.037 5.037 23 N -0.094 5.094 24 H 0.322 0.678 25 C -0.075 4.075 26 C -0.033 4.033 27 O -0.299 6.299 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.203 0.797 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.237 0.763 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.938 -9.894 22.291 24.407 hybrid contribution 0.091 -0.116 -1.739 1.745 sum 1.030 -10.010 20.552 22.884 Atomic orbital electron populations 1.22170 0.96673 1.01568 1.00690 1.20471 0.93783 0.94934 0.83875 0.91783 1.42675 1.79687 1.09639 1.06638 1.19045 1.34484 0.94397 0.87413 0.92285 1.25420 1.02703 1.02141 0.95218 1.69883 1.55013 1.37613 1.01186 0.85500 0.78456 0.81484 0.76957 1.20698 1.17305 1.22845 1.22694 0.91278 0.84112 0.98944 0.89549 1.22295 0.95514 0.96638 0.88687 1.48151 1.40696 1.16665 1.28063 1.16972 0.79126 0.85463 0.80123 1.90882 1.56855 1.20833 1.73614 1.22025 1.13392 0.84218 0.99868 1.24271 0.98021 1.00843 0.89546 1.75013 1.18782 0.96121 1.25512 1.78188 1.12341 1.21999 0.91136 1.46362 1.42060 1.05921 1.15015 0.67800 1.23169 0.96985 0.82911 1.04444 1.23185 0.92054 0.99048 0.88986 1.88068 1.75384 1.23444 1.42975 0.91127 0.94743 0.92823 0.79745 0.93574 0.90847 0.88745 0.76253 0.87510 0.87848 0.91398 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 9.35 71.98 0.67 -4.11 16 2 C 0.18 6.05 2.73 44.99 0.12 6.17 16 3 H 0.06 2.27 8.08 -2.38 -0.02 2.25 16 4 N -0.74 -32.11 4.09 -322.95 -1.32 -33.43 16 5 C -0.22 -12.11 10.41 84.03 0.87 -11.24 16 6 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 7 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 8 N -0.99 -62.46 13.97 21.65 0.30 -62.15 16 9 Si 0.95 44.27 27.74 68.60 1.90 46.17 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.25 -10.44 6.52 99.48 0.65 -9.79 16 12 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 13 C 0.09 2.31 2.53 30.69 0.08 2.38 16 14 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 15 C 0.09 2.48 5.86 86.35 0.51 2.98 16 16 N -0.60 -12.43 3.02 -821.47 -2.48 -14.91 16 17 C 0.60 13.54 7.67 86.61 0.66 14.21 16 18 O -0.55 -16.60 16.49 -4.08 -0.07 -16.67 16 19 C -0.06 -1.08 6.51 40.41 0.26 -0.81 16 20 C 0.03 0.59 11.96 84.18 1.01 1.60 16 21 N -0.29 -6.00 12.35 -57.50 -0.71 -6.71 16 22 N -0.05 -1.00 13.35 37.02 0.49 -0.51 16 23 N -0.36 -4.81 5.79 -48.52 -0.28 -5.09 16 24 H 0.47 3.14 6.39 -219.90 -1.41 1.73 16 25 C 0.05 0.60 5.77 86.35 0.50 1.10 16 26 C 0.04 0.62 6.98 72.08 0.50 1.12 16 27 O -0.38 -9.15 9.22 -148.98 -1.37 -10.52 16 28 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.71 7.68 -2.39 -0.02 1.69 16 31 H 0.37 15.58 5.06 -92.71 -0.47 15.11 16 32 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 33 H 0.07 2.36 7.26 -2.39 -0.02 2.35 16 34 H 0.09 2.81 7.08 -2.39 -0.02 2.80 16 35 H 0.22 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.11 0.77 3.99 -2.39 -0.01 0.76 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 39 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -74.67 320.85 1.30 -73.37 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.83 Total: 20.25 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.66 Total: 10.20 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -4.00 Total: -122.80 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.44 Total: -27.19 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.90 Total: 46.17 kcal Total: -74.67 1.30 -73.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485641135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.483 kcal (2) G-P(sol) polarization free energy of solvation -74.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds