Wall clock time and date at job start Tue Mar 31 2020 03:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37347 * 125.83545 * 2 1 4 4 N 1.29409 * 108.83046 * 179.72988 * 3 2 1 5 5 N 1.40167 * 108.13814 * 0.38353 * 4 3 2 6 6 C 1.46495 * 126.34734 * 179.87932 * 5 4 3 7 7 C 1.50698 * 109.47357 * 269.68720 * 6 5 4 8 8 O 1.21280 * 120.00018 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00238 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00154 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47338 * 179.97438 * 10 9 7 12 12 H 1.08996 * 112.77506 * 56.27308 * 11 10 9 13 13 C 1.53756 * 113.55250 * 187.13463 * 11 10 9 14 14 C 1.53492 * 83.25530 * 140.98868 * 13 11 10 15 15 N 1.47060 * 87.98955 * 333.76204 * 14 13 11 16 16 C 1.36943 * 136.06025 * 207.08609 * 15 14 13 17 17 H 1.08002 * 119.99788 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 0.27775 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48496 * 109.47031 * 59.99836 * 20 18 16 22 22 H 1.48497 * 109.47267 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47169 * 300.00118 * 20 18 16 24 24 C 1.34816 * 125.83055 * 179.97438 * 2 1 3 25 25 O 1.21815 * 126.30286 * 0.02562 * 24 2 1 26 26 H 1.08992 * 109.47652 * 270.02512 * 1 2 3 27 27 H 1.09004 * 109.46595 * 30.03073 * 1 2 3 28 28 H 1.09007 * 109.47336 * 150.02333 * 1 2 3 29 29 H 1.08007 * 125.58751 * 359.97136 * 3 2 1 30 30 H 1.09004 * 109.47042 * 149.68526 * 6 5 4 31 31 H 1.09005 * 109.47369 * 29.68557 * 6 5 4 32 32 H 0.97003 * 120.00379 * 359.97438 * 9 7 6 33 33 H 1.09003 * 109.46849 * 59.99253 * 10 9 7 34 34 H 1.08995 * 109.46754 * 299.99884 * 10 9 7 35 35 H 1.08993 * 114.39365 * 27.42642 * 13 11 10 36 36 H 1.09006 * 114.26383 * 254.54044 * 13 11 10 37 37 H 1.09004 * 113.46349 * 218.98046 * 14 13 11 38 38 H 1.09006 * 113.52425 * 88.55450 * 14 13 11 39 39 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1135 0.0000 4 7 3.5066 0.7350 0.0058 5 7 3.5344 -0.6664 0.0008 6 6 4.7312 -1.5111 0.0022 7 6 5.1424 -1.8020 -1.4181 8 8 4.4993 -1.3480 -2.3407 9 7 6.2248 -2.5667 -1.6632 10 6 6.6249 -2.8490 -3.0440 11 6 7.8749 -3.7314 -3.0426 12 1 7.7371 -4.6572 -2.4842 13 6 8.4788 -3.9433 -4.4406 14 6 9.8097 -3.8145 -3.6868 15 7 9.1027 -3.0069 -2.6816 16 6 9.4404 -2.0192 -1.7951 17 1 8.6861 -1.5892 -1.1527 18 6 10.7507 -1.5663 -1.7267 19 7 11.6698 -2.0899 -2.5099 20 14 11.2097 -0.2136 -0.5230 21 1 10.9120 -0.6609 0.8613 22 1 12.6589 0.0866 -0.6447 23 1 10.4232 1.0085 -0.8282 24 6 2.2542 -1.0930 0.0005 25 8 1.8805 -2.2524 0.0006 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3634 -0.8902 -0.5135 29 1 1.9250 2.1373 -0.0004 30 1 4.5146 -2.4473 0.5168 31 1 5.5411 -0.9930 0.5160 32 1 6.7395 -2.9296 -0.9253 33 1 6.8420 -1.9127 -3.5580 34 1 5.8151 -3.3664 -3.5582 35 1 8.2829 -3.1334 -5.1431 36 1 8.2975 -4.9323 -4.8616 37 1 10.5678 -3.2568 -4.2368 38 1 10.1831 -4.7620 -3.2981 39 1 12.5855 -1.7737 -2.4618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499007638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:42 Heat of formation + Delta-G solvation = 52.005028 kcal Electronic energy + Delta-G solvation = -23695.899563 eV Core-core repulsion = 20063.295066 eV Total energy + Delta-G solvation = -3632.604497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.42636 -40.86967 -39.72654 -38.42664 -36.27474 -35.56655 -34.23118 -32.94630 -30.29047 -29.85253 -28.70471 -27.40514 -25.38414 -24.09128 -23.35298 -22.44128 -21.66358 -20.95879 -19.09124 -18.65706 -18.27606 -17.35838 -17.29589 -17.17904 -16.91961 -16.57744 -16.15981 -15.81303 -15.46027 -15.36263 -14.88775 -14.66790 -14.28596 -13.79851 -13.57720 -13.48343 -13.42552 -13.15794 -12.92921 -12.90699 -12.68516 -12.59216 -12.34092 -11.85953 -11.66304 -11.59466 -11.42926 -11.14351 -10.82941 -10.69357 -10.09212 -9.66983 -8.88415 -7.85390 -5.17578 0.65143 1.08752 1.46862 1.48596 1.49954 1.54204 1.54992 2.09905 2.35221 2.49935 3.36106 3.42436 3.44812 3.67608 3.93399 4.05719 4.08974 4.11389 4.13822 4.33105 4.40230 4.53281 4.60919 4.67845 4.78929 4.84758 4.88557 4.99085 5.04987 5.08283 5.33079 5.39019 5.59537 5.66911 5.73417 5.98112 6.45518 6.59809 6.90761 6.94963 7.12302 7.66124 8.65399 9.32221 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.019498 B = 0.003834 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.700867 B = 7301.275742 C = 8385.776214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.558 5.558 3 C 0.278 3.722 4 N -0.317 5.317 5 N -0.445 5.445 6 C 0.142 3.858 7 C 0.493 3.507 8 O -0.582 6.582 9 N -0.704 5.704 10 C 0.133 3.867 11 C 0.135 3.865 12 H 0.072 0.928 13 C -0.136 4.136 14 C 0.143 3.857 15 N -0.628 5.628 16 C -0.210 4.210 17 H 0.091 0.909 18 C -0.072 4.072 19 N -0.956 5.956 20 Si 0.970 3.030 21 H -0.271 1.271 22 H -0.300 1.300 23 H -0.283 1.283 24 C 0.632 3.368 25 O -0.598 6.598 26 H 0.091 0.909 27 H 0.130 0.870 28 H 0.068 0.932 29 H 0.291 0.709 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.413 0.587 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.035 0.965 38 H 0.024 0.976 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.294 4.490 6.441 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.286 5.286 3 C -0.019 4.019 4 N -0.138 5.138 5 N -0.264 5.264 6 C 0.017 3.983 7 C 0.279 3.721 8 O -0.462 6.462 9 N -0.356 5.356 10 C 0.008 3.992 11 C 0.028 3.972 12 H 0.089 0.911 13 C -0.175 4.175 14 C 0.017 3.983 15 N -0.354 5.354 16 C -0.338 4.338 17 H 0.108 0.892 18 C -0.264 4.264 19 N -0.605 5.605 20 Si 0.799 3.201 21 H -0.197 1.197 22 H -0.226 1.226 23 H -0.209 1.209 24 C 0.331 3.669 25 O -0.476 6.476 26 H 0.110 0.890 27 H 0.148 0.852 28 H 0.087 0.913 29 H 0.306 0.694 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.249 0.751 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -20.791 4.486 5.970 22.092 hybrid contribution 0.492 0.113 0.661 0.831 sum -20.299 4.599 6.630 21.844 Atomic orbital electron populations 1.22181 0.71614 1.05930 1.05034 1.46126 1.10262 1.05793 1.66411 1.27135 0.84341 0.96208 0.94232 1.77039 1.20721 0.90473 1.25538 1.48335 1.05475 1.04109 1.68463 1.21370 0.86507 0.96615 0.93800 1.21389 0.80415 0.77966 0.92360 1.90660 1.55120 1.52988 1.47426 1.45834 1.28314 1.51417 1.09986 1.21579 0.96347 0.98833 0.82437 1.22600 0.86190 0.93588 0.94800 0.91101 1.23530 0.96467 1.02357 0.95110 1.22032 0.94590 0.92672 0.88956 1.46008 1.06356 1.38993 1.44077 1.19225 0.93424 1.08964 1.12201 0.89154 1.25565 0.96179 1.02636 1.02046 1.70008 1.01479 1.46230 1.42795 0.85272 0.76281 0.79269 0.79287 1.19658 1.22630 1.20923 1.17035 0.82680 0.85614 0.81557 1.91015 1.78484 1.17164 1.60892 0.89016 0.85190 0.91272 0.69442 0.83956 0.83422 0.75099 0.94056 0.90834 0.90434 0.88297 0.94623 0.95868 0.94612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 11.05 127.77 1.41 2.27 16 2 N -0.56 -10.68 3.14 -683.68 -2.15 -12.82 16 3 C 0.28 4.18 12.66 179.83 2.28 6.46 16 4 N -0.32 -7.97 12.53 -59.42 -0.74 -8.71 16 5 N -0.45 -13.10 3.11 -481.78 -1.50 -14.60 16 6 C 0.14 3.85 6.87 85.63 0.59 4.43 16 7 C 0.49 17.09 7.90 87.66 0.69 17.78 16 8 O -0.58 -25.06 16.43 -3.03 -0.05 -25.11 16 9 N -0.70 -23.25 5.33 -463.06 -2.47 -25.72 16 10 C 0.13 4.77 5.53 86.38 0.48 5.25 16 11 C 0.13 4.96 4.11 41.87 0.17 5.13 16 12 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 13 C -0.14 -4.75 8.04 31.01 0.25 -4.50 16 14 C 0.14 6.57 7.39 83.17 0.61 7.18 16 15 N -0.63 -30.22 3.65 -713.51 -2.60 -32.82 16 16 C -0.21 -11.09 10.55 84.03 0.89 -10.20 16 17 H 0.09 4.44 7.51 -2.91 -0.02 4.42 16 18 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 19 N -0.96 -57.41 11.51 21.65 0.25 -57.17 16 20 Si 0.97 45.16 29.55 68.60 2.03 47.18 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 C 0.63 19.12 8.60 178.99 1.54 20.66 16 25 O -0.60 -22.17 17.71 -4.72 -0.08 -22.25 16 26 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.13 0.12 8.14 -2.38 -0.02 0.10 16 28 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 29 H 0.29 0.22 8.06 -2.91 -0.02 0.20 16 30 H 0.14 3.21 8.11 -2.38 -0.02 3.19 16 31 H 0.15 3.28 8.14 -2.38 -0.02 3.27 16 32 H 0.41 12.22 8.38 -92.71 -0.78 11.44 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.08 2.76 8.13 -2.39 -0.02 2.74 16 36 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 37 H 0.04 1.88 7.12 -2.38 -0.02 1.86 16 38 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -87.83 341.31 2.35 -85.48 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.30 Total: 15.63 kcal Atomic # 6 Polarization: 41.54 SS G_CDS: 9.38 Total: 50.92 kcal Atomic # 7 Polarization: -142.63 SS G_CDS: -9.21 Total: -151.85 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -0.13 Total: -47.37 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -87.83 2.35 -85.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499007638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.485 kcal (2) G-P(sol) polarization free energy of solvation -87.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds