Wall clock time and date at job start Tue Mar 31 2020 02:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36587 * 126.58125 * 2 1 4 4 C 1.47521 * 125.77059 * 0.03061 * 3 2 1 5 5 O 1.21598 * 120.00317 * 359.71717 * 4 3 2 6 6 N 1.34780 * 120.00125 * 179.72012 * 4 3 2 7 7 C 1.46504 * 119.99814 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.46941 * 180.02562 * 7 6 4 9 9 O 1.42905 * 113.28091 * 313.06421 * 8 7 6 10 10 C 1.53495 * 114.20669 * 180.02562 * 8 7 6 11 11 N 1.47066 * 87.98658 * 220.34216 * 10 8 7 12 12 C 1.36937 * 136.06113 * 206.85859 * 11 10 8 13 13 H 1.07995 * 120.00001 * 0.02562 * 12 11 10 14 14 C 1.38817 * 120.00320 * 179.97438 * 12 11 10 15 15 N 1.31620 * 119.99557 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99975 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47363 * 60.00463 * 16 14 12 18 18 H 1.48506 * 109.46719 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47174 * 300.00290 * 16 14 12 20 20 C 1.47067 * 87.88528 * 27.11900 * 11 10 8 21 21 N 1.34401 * 108.46205 * 179.77336 * 3 2 1 22 22 N 1.28768 * 109.52154 * 0.22097 * 21 3 2 23 23 N 1.34819 * 126.58039 * 180.15863 * 2 1 3 24 24 C 1.46500 * 126.59301 * 359.97309 * 23 2 1 25 25 H 1.08995 * 109.46785 * 90.00341 * 1 2 3 26 26 H 1.08999 * 109.47020 * 210.00148 * 1 2 3 27 27 H 1.08992 * 109.46786 * 330.00282 * 1 2 3 28 28 H 0.96992 * 119.99879 * 359.97438 * 6 4 3 29 29 H 1.09003 * 109.47373 * 59.99924 * 7 6 4 30 30 H 1.08997 * 109.47135 * 299.99923 * 7 6 4 31 31 H 0.96696 * 113.99817 * 46.93921 * 9 8 7 32 32 H 1.09005 * 113.46950 * 105.56781 * 10 8 7 33 33 H 1.08998 * 113.47096 * 335.12425 * 10 8 7 34 34 H 0.96999 * 119.99537 * 179.97438 * 15 14 12 35 35 H 1.09007 * 113.46858 * 87.65629 * 20 11 10 36 36 H 1.08993 * 113.47208 * 218.09965 * 20 11 10 37 37 H 1.08996 * 109.47164 * 270.27227 * 24 23 2 38 38 H 1.08996 * 109.47332 * 30.27050 * 24 23 2 39 39 H 1.08999 * 109.47097 * 150.26928 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8738 2.5026 0.0006 5 8 0.6860 2.7628 -0.0040 6 7 2.7818 3.4987 0.0063 7 6 2.3376 4.8947 0.0075 8 6 3.5575 5.8181 0.0135 9 8 4.5455 5.4423 0.9753 10 6 3.2145 7.3142 0.0159 11 7 4.3209 7.5164 -0.9315 12 6 5.1655 8.5442 -1.2565 13 1 5.0833 9.4924 -0.7463 14 6 6.1280 8.3669 -2.2409 15 7 6.2285 7.2110 -2.8624 16 14 7.2805 9.7687 -2.6836 17 1 8.0624 10.1641 -1.4847 18 1 8.2077 9.3271 -3.7563 19 1 6.4873 10.9293 -3.1622 20 6 4.1170 6.1311 -1.3812 21 7 3.5984 0.6788 0.0050 22 7 3.6300 -0.6085 0.0035 23 7 2.3105 -1.0826 -0.0030 24 6 1.8864 -2.4849 -0.0063 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5138 28 1 3.7293 3.2912 0.0103 29 1 1.7343 5.0833 0.8955 30 1 1.7413 5.0870 -0.8844 31 1 4.7593 4.4993 0.9715 32 1 3.3759 7.7951 0.9807 33 1 2.2347 7.5356 -0.4073 34 1 6.9008 7.0872 -3.5505 35 1 3.3775 6.0372 -2.1765 36 1 5.0456 5.6059 -1.6043 37 1 1.7770 -2.8338 1.0205 38 1 0.9316 -2.5745 -0.5242 39 1 2.6353 -3.0897 -0.5178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672066041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:17 Heat of formation + Delta-G solvation = 80.614784 kcal Electronic energy + Delta-G solvation = -23546.337857 eV Core-core repulsion = 19914.973972 eV Total energy + Delta-G solvation = -3631.363885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.45918 -39.67911 -38.52509 -35.30091 -34.89190 -33.87213 -32.56348 -31.97599 -29.25939 -27.96578 -27.75340 -25.95814 -24.72331 -23.48688 -21.97237 -21.18168 -20.52326 -19.33607 -18.42453 -16.87106 -16.68601 -16.41616 -15.87199 -15.47400 -15.11027 -14.75058 -14.45362 -14.10458 -13.96211 -13.76074 -13.67321 -13.37167 -13.35884 -13.01918 -12.89592 -12.67553 -12.17713 -12.13723 -11.78604 -11.37104 -11.02765 -10.84491 -10.64384 -10.47434 -10.41749 -10.15741 -9.79310 -9.46028 -9.38811 -9.07612 -8.81286 -8.77060 -6.84982 -5.71762 -3.03833 0.89033 1.58407 1.76248 3.14655 3.25546 3.44530 3.47818 3.49421 3.96491 4.04178 4.32090 4.48341 4.51043 4.53765 4.60333 4.80478 4.97850 5.07211 5.13882 5.29192 5.36323 5.36952 5.48793 5.64612 5.70079 5.80857 6.05588 6.12869 6.34686 6.43565 6.58271 6.59098 7.05300 7.22420 7.43135 7.55665 7.78798 8.00516 8.14186 8.25606 9.07642 9.74586 10.65831 11.45833 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028685 B = 0.003133 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.875620 B = 8935.416266 C = 9475.542892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.122 3.878 3 C -0.104 4.104 4 C 0.607 3.393 5 O -0.540 6.540 6 N -0.708 5.708 7 C 0.108 3.892 8 C 0.057 3.943 9 O -0.522 6.522 10 C 0.135 3.865 11 N -0.600 5.600 12 C -0.215 4.215 13 H 0.082 0.918 14 C -0.008 4.008 15 N -0.920 5.920 16 Si 0.915 3.085 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.136 3.864 21 N -0.199 5.199 22 N -0.067 5.067 23 N -0.367 5.367 24 C 0.088 3.912 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.406 0.594 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.363 0.637 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.254 0.746 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.983 -20.633 6.359 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.016 4.016 3 C -0.244 4.244 4 C 0.391 3.609 5 O -0.417 6.417 6 N -0.359 5.359 7 C -0.016 4.016 8 C 0.014 3.986 9 O -0.326 6.326 10 C 0.008 3.992 11 N -0.325 5.325 12 C -0.342 4.342 13 H 0.100 0.900 14 C -0.205 4.205 15 N -0.567 5.567 16 Si 0.745 3.255 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.212 1.212 20 C 0.009 3.991 21 N -0.072 5.072 22 N -0.046 5.046 23 N -0.153 5.153 24 C -0.054 4.054 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.132 0.868 28 H 0.242 0.758 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.209 0.791 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.055 -20.019 6.302 24.204 hybrid contribution 0.148 -0.025 -0.575 0.594 sum -11.907 -20.044 5.727 24.008 Atomic orbital electron populations 1.20722 0.84605 1.05396 1.04703 1.21921 0.96240 0.86325 0.97068 1.21230 0.89052 0.95476 1.18620 1.16652 0.85524 0.82377 0.76344 1.90755 1.15833 1.83620 1.51478 1.45724 1.10253 1.06168 1.73795 1.22013 0.97780 0.78767 1.03072 1.23421 0.86986 0.95038 0.93161 1.86623 1.59701 1.28451 1.57830 1.22378 0.92683 0.89219 0.94942 1.45252 1.33902 1.11389 1.41924 1.18855 1.08116 0.90891 1.16311 0.90049 1.24790 0.99477 0.97441 0.98761 1.69809 1.36548 1.22723 1.27655 0.86156 0.80467 0.81081 0.77785 1.21035 1.21575 1.21191 1.22758 0.99027 0.86804 0.90473 1.74631 1.18999 1.04141 1.09440 1.82023 0.95842 1.03448 1.23334 1.50292 1.06536 1.07749 1.50749 1.22153 1.02462 0.76112 1.04641 0.88973 0.90736 0.86848 0.75780 0.90734 0.89912 0.79094 0.93054 0.93289 0.93636 0.94890 0.90460 0.89310 0.88549 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 9.38 36.01 0.34 -0.32 16 2 C 0.12 1.25 7.02 -81.87 -0.57 0.68 16 3 C -0.10 -1.39 6.99 -83.55 -0.58 -1.97 16 4 C 0.61 8.87 7.82 -12.47 -0.10 8.77 16 5 O -0.54 -8.54 14.72 5.28 0.08 -8.46 16 6 N -0.71 -10.29 5.34 -61.35 -0.33 -10.61 16 7 C 0.11 1.69 5.42 -4.04 -0.02 1.67 16 8 C 0.06 1.09 1.73 -90.11 -0.16 0.93 16 9 O -0.52 -10.18 13.56 -35.23 -0.48 -10.66 16 10 C 0.13 2.85 8.11 -8.51 -0.07 2.78 16 11 N -0.60 -15.94 3.78 -184.75 -0.70 -16.64 16 12 C -0.21 -6.23 10.75 -15.06 -0.16 -6.39 16 13 H 0.08 2.27 7.83 -52.49 -0.41 1.85 16 14 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 15 N -0.92 -27.96 11.51 55.49 0.64 -27.32 16 16 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 C 0.14 3.23 6.83 -8.51 -0.06 3.17 16 21 N -0.20 -2.84 12.04 32.84 0.40 -2.44 16 22 N -0.07 -0.86 13.78 60.35 0.83 -0.03 16 23 N -0.37 -3.41 4.03 -63.59 -0.26 -3.66 16 24 C 0.09 0.32 11.17 59.85 0.67 0.99 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.28 7.84 -51.93 -0.41 -0.13 16 27 H 0.11 0.99 6.43 -51.93 -0.33 0.65 16 28 H 0.41 5.67 6.63 -40.82 -0.27 5.40 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 31 H 0.36 5.60 7.20 45.56 0.33 5.93 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.03 0.79 7.93 -51.93 -0.41 0.37 16 36 H 0.08 2.06 7.12 -51.93 -0.37 1.69 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.10 0.12 7.78 -51.93 -0.40 -0.29 16 39 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -36.92 334.13 -4.98 -41.90 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.36 Total: 5.24 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -0.81 Total: 9.96 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.58 Total: -60.71 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.40 Total: -19.12 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.92 -4.98 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672066041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.511 kcal (2) G-P(sol) polarization free energy of solvation -36.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds