Wall clock time and date at job start Tue Mar 31 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36587 * 126.58125 * 2 1 4 4 C 1.47521 * 125.77059 * 0.03061 * 3 2 1 5 5 O 1.21598 * 120.00317 * 359.71717 * 4 3 2 6 6 N 1.34780 * 120.00125 * 179.72012 * 4 3 2 7 7 C 1.46504 * 119.99814 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.46941 * 180.02562 * 7 6 4 9 9 O 1.42905 * 113.28091 * 313.06421 * 8 7 6 10 10 C 1.53495 * 114.20669 * 180.02562 * 8 7 6 11 11 N 1.47066 * 87.98658 * 220.34216 * 10 8 7 12 12 C 1.36937 * 136.06113 * 206.85859 * 11 10 8 13 13 H 1.07995 * 120.00001 * 0.02562 * 12 11 10 14 14 C 1.38817 * 120.00320 * 179.97438 * 12 11 10 15 15 N 1.31620 * 119.99557 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99975 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47363 * 60.00463 * 16 14 12 18 18 H 1.48506 * 109.46719 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47174 * 300.00290 * 16 14 12 20 20 C 1.47067 * 87.88528 * 27.11900 * 11 10 8 21 21 N 1.34401 * 108.46205 * 179.77336 * 3 2 1 22 22 N 1.28768 * 109.52154 * 0.22097 * 21 3 2 23 23 N 1.34819 * 126.58039 * 180.15863 * 2 1 3 24 24 C 1.46500 * 126.59301 * 359.97309 * 23 2 1 25 25 H 1.08995 * 109.46785 * 90.00341 * 1 2 3 26 26 H 1.08999 * 109.47020 * 210.00148 * 1 2 3 27 27 H 1.08992 * 109.46786 * 330.00282 * 1 2 3 28 28 H 0.96992 * 119.99879 * 359.97438 * 6 4 3 29 29 H 1.09003 * 109.47373 * 59.99924 * 7 6 4 30 30 H 1.08997 * 109.47135 * 299.99923 * 7 6 4 31 31 H 0.96696 * 113.99817 * 46.93921 * 9 8 7 32 32 H 1.09005 * 113.46950 * 105.56781 * 10 8 7 33 33 H 1.08998 * 113.47096 * 335.12425 * 10 8 7 34 34 H 0.96999 * 119.99537 * 179.97438 * 15 14 12 35 35 H 1.09007 * 113.46858 * 87.65629 * 20 11 10 36 36 H 1.08993 * 113.47208 * 218.09965 * 20 11 10 37 37 H 1.08996 * 109.47164 * 270.27227 * 24 23 2 38 38 H 1.08996 * 109.47332 * 30.27050 * 24 23 2 39 39 H 1.08999 * 109.47097 * 150.26928 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8738 2.5026 0.0006 5 8 0.6860 2.7628 -0.0040 6 7 2.7818 3.4987 0.0063 7 6 2.3376 4.8947 0.0075 8 6 3.5575 5.8181 0.0135 9 8 4.5455 5.4423 0.9753 10 6 3.2145 7.3142 0.0159 11 7 4.3209 7.5164 -0.9315 12 6 5.1655 8.5442 -1.2565 13 1 5.0833 9.4924 -0.7463 14 6 6.1280 8.3669 -2.2409 15 7 6.2285 7.2110 -2.8624 16 14 7.2805 9.7687 -2.6836 17 1 8.0624 10.1641 -1.4847 18 1 8.2077 9.3271 -3.7563 19 1 6.4873 10.9293 -3.1622 20 6 4.1170 6.1311 -1.3812 21 7 3.5984 0.6788 0.0050 22 7 3.6300 -0.6085 0.0035 23 7 2.3105 -1.0826 -0.0030 24 6 1.8864 -2.4849 -0.0063 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5138 28 1 3.7293 3.2912 0.0103 29 1 1.7343 5.0833 0.8955 30 1 1.7413 5.0870 -0.8844 31 1 4.7593 4.4993 0.9715 32 1 3.3759 7.7951 0.9807 33 1 2.2347 7.5356 -0.4073 34 1 6.9008 7.0872 -3.5505 35 1 3.3775 6.0372 -2.1765 36 1 5.0456 5.6059 -1.6043 37 1 1.7770 -2.8338 1.0205 38 1 0.9316 -2.5745 -0.5242 39 1 2.6353 -3.0897 -0.5178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672066041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:15 Heat of formation + Delta-G solvation = 48.982640 kcal Electronic energy + Delta-G solvation = -23547.709529 eV Core-core repulsion = 19914.973972 eV Total energy + Delta-G solvation = -3632.735558 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.30548 -41.09403 -39.94735 -36.61973 -35.96734 -35.15357 -34.06760 -33.31244 -30.59860 -29.18783 -28.31157 -27.54455 -26.52264 -24.68937 -23.57206 -22.00852 -21.57592 -21.00635 -19.53562 -18.72882 -17.65673 -17.46724 -17.16987 -16.90283 -16.38809 -16.18148 -15.75735 -15.53955 -15.22548 -15.00385 -14.71257 -14.42592 -14.17610 -14.10950 -13.93335 -13.86635 -13.41767 -13.28987 -13.00281 -12.96046 -12.78850 -12.49380 -12.27993 -12.17732 -11.78814 -11.41155 -11.15808 -11.11461 -10.93397 -10.67676 -10.35086 -10.01992 -8.94088 -7.90766 -5.24147 0.11165 0.57635 1.14097 1.44655 1.49335 1.55096 2.02672 2.19408 2.46929 3.03669 3.15536 3.30746 3.35397 3.44065 3.61269 3.63837 3.75964 3.90189 4.35188 4.40312 4.41750 4.62159 4.67828 4.68175 4.71225 4.75614 4.78417 4.85217 4.94706 5.08570 5.15954 5.25090 5.32656 5.47552 5.53695 5.91233 6.29799 6.76073 6.87289 6.89457 7.07556 7.58651 8.57579 9.26454 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028685 B = 0.003133 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.875620 B = 8935.416266 C = 9475.542892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.134 3.866 3 C -0.135 4.135 4 C 0.609 3.391 5 O -0.554 6.554 6 N -0.709 5.709 7 C 0.124 3.876 8 C 0.089 3.911 9 O -0.539 6.539 10 C 0.131 3.869 11 N -0.635 5.635 12 C -0.230 4.230 13 H 0.086 0.914 14 C -0.069 4.069 15 N -0.953 5.953 16 Si 0.984 3.016 17 H -0.277 1.277 18 H -0.293 1.293 19 H -0.274 1.274 20 C 0.133 3.867 21 N -0.227 5.227 22 N -0.095 5.095 23 N -0.354 5.354 24 C 0.072 3.928 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.407 0.593 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.380 0.620 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.248 0.752 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.775 -21.951 7.129 27.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.005 4.005 3 C -0.275 4.275 4 C 0.394 3.606 5 O -0.432 6.432 6 N -0.361 5.361 7 C -0.001 4.001 8 C 0.046 3.954 9 O -0.345 6.345 10 C 0.006 3.994 11 N -0.361 5.361 12 C -0.358 4.358 13 H 0.104 0.896 14 C -0.262 4.262 15 N -0.601 5.601 16 Si 0.811 3.189 17 H -0.203 1.203 18 H -0.220 1.220 19 H -0.200 1.200 20 C 0.006 3.994 21 N -0.100 5.100 22 N -0.074 5.074 23 N -0.139 5.139 24 C -0.067 4.067 25 H 0.123 0.877 26 H 0.132 0.868 27 H 0.115 0.885 28 H 0.244 0.756 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.229 0.771 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.128 0.872 38 H 0.147 0.853 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.864 -21.384 7.104 26.456 hybrid contribution 0.617 0.249 -0.771 1.018 sum -13.247 -21.135 6.333 25.735 Atomic orbital electron populations 1.20851 0.81967 1.06486 1.05769 1.22386 0.97539 0.85632 0.94964 1.21253 0.89636 0.95568 1.21073 1.16800 0.85209 0.82880 0.75689 1.90739 1.16212 1.84008 1.52229 1.45680 1.10471 1.05809 1.74151 1.21754 0.95704 0.78677 1.03934 1.22931 0.87540 0.95091 0.89840 1.86569 1.60153 1.30312 1.57462 1.22618 0.92328 0.90406 0.94067 1.45620 1.35347 1.11817 1.43302 1.19283 1.08605 0.91802 1.16076 0.89646 1.25684 1.01382 1.00016 0.99132 1.70013 1.37234 1.24675 1.28224 0.85081 0.78244 0.78243 0.77326 1.20311 1.21959 1.20008 1.22757 0.97548 0.85827 0.93242 1.74590 1.19926 1.04990 1.10454 1.81908 0.98062 1.03045 1.24427 1.50640 1.05190 1.09457 1.48656 1.22727 1.04163 0.73101 1.06699 0.87678 0.86814 0.88542 0.75623 0.89025 0.89791 0.77126 0.92725 0.90492 0.94333 0.95179 0.94135 0.87159 0.85321 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.38 71.24 0.67 -0.32 16 2 C 0.13 2.50 7.02 41.72 0.29 2.79 16 3 C -0.14 -3.53 6.99 40.81 0.29 -3.25 16 4 C 0.61 17.44 7.82 86.69 0.68 18.12 16 5 O -0.55 -16.91 14.72 -4.02 -0.06 -16.97 16 6 N -0.71 -20.36 5.34 -466.27 -2.49 -22.85 16 7 C 0.12 3.73 5.42 86.38 0.47 4.20 16 8 C 0.09 3.36 1.73 -10.46 -0.02 3.35 16 9 O -0.54 -20.88 13.56 -148.98 -2.02 -22.90 16 10 C 0.13 5.46 8.11 83.18 0.67 6.13 16 11 N -0.64 -34.18 3.78 -738.90 -2.79 -36.97 16 12 C -0.23 -13.51 10.75 84.03 0.90 -12.61 16 13 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 14 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 15 N -0.95 -59.63 11.51 21.65 0.25 -59.39 16 16 Si 0.98 47.40 29.55 68.60 2.03 49.42 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 20 C 0.13 6.46 6.83 83.18 0.57 7.03 16 21 N -0.23 -6.52 12.04 -50.00 -0.60 -7.13 16 22 N -0.09 -2.40 13.78 37.02 0.51 -1.89 16 23 N -0.35 -5.83 4.03 -355.10 -1.43 -7.26 16 24 C 0.07 0.28 11.17 127.77 1.43 1.70 16 25 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.11 0.32 7.84 -2.39 -0.02 0.30 16 27 H 0.10 1.47 6.43 -2.39 -0.02 1.46 16 28 H 0.41 11.52 6.63 -92.71 -0.61 10.91 16 29 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.08 2.55 7.89 -2.39 -0.02 2.54 16 31 H 0.38 11.71 7.20 -74.06 -0.53 11.18 16 32 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 34 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.03 1.48 7.93 -2.38 -0.02 1.46 16 36 H 0.04 2.25 7.12 -2.39 -0.02 2.24 16 37 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.13 -0.29 7.78 -2.39 -0.02 -0.31 16 39 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -82.21 334.13 -0.24 -82.45 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.05 Total: 19.98 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 6.41 Total: 23.49 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -6.56 Total: -135.48 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -2.08 Total: -39.86 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -82.21 -0.24 -82.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672066041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.434 kcal (2) G-P(sol) polarization free energy of solvation -82.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds