Wall clock time and date at job start Tue Mar 31 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00365 * 2 1 4 4 H 1.48497 * 109.47452 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47251 * 300.00366 * 3 2 1 6 6 H 1.48501 * 109.47086 * 60.00476 * 3 2 1 7 7 C 1.38813 * 119.99330 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99895 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00564 * 359.97438 * 7 2 1 10 10 C 1.47818 * 125.64574 * 359.69638 * 9 7 2 11 11 C 1.53902 * 104.06210 * 156.91204 * 10 9 7 12 12 H 1.08995 * 108.65250 * 282.92954 * 11 10 9 13 13 C 1.50733 * 113.02794 * 161.47140 * 11 10 9 14 14 C 1.52828 * 111.74835 * 294.86534 * 13 11 10 15 15 C 1.53336 * 108.08991 * 301.08057 * 14 13 11 16 16 H 1.08996 * 109.67706 * 304.36497 * 15 14 13 17 17 N 1.46508 * 109.67643 * 183.85807 * 15 14 13 18 18 C 1.34775 * 119.99852 * 84.99970 * 17 15 14 19 19 O 1.21285 * 120.00014 * 0.02562 * 18 17 15 20 20 C 1.50694 * 119.99677 * 180.02562 * 18 17 15 21 21 C 1.50702 * 109.47105 * 179.97438 * 20 18 17 22 22 N 1.34782 * 120.00272 * 179.97438 * 21 20 18 23 23 O 1.21283 * 119.99845 * 0.02562 * 21 20 18 24 24 C 1.52584 * 108.40521 * 64.13155 * 15 14 13 25 25 C 1.53003 * 111.05418 * 297.64142 * 24 15 14 26 26 H 1.09005 * 112.55223 * 286.29959 * 25 24 15 27 27 C 1.47176 * 125.65247 * 180.02562 * 9 7 2 28 28 H 0.97001 * 119.99226 * 359.97438 * 1 2 3 29 29 H 1.09005 * 110.51090 * 275.55297 * 10 9 7 30 30 H 1.08994 * 110.51775 * 38.26813 * 10 9 7 31 31 H 1.09000 * 109.02522 * 55.44724 * 13 11 10 32 32 H 1.08997 * 109.02766 * 174.27767 * 13 11 10 33 33 H 1.08995 * 109.74085 * 60.73036 * 14 13 11 34 34 H 1.09004 * 109.73793 * 181.38708 * 14 13 11 35 35 H 0.96997 * 119.99946 * 265.00353 * 17 15 14 36 36 H 1.08999 * 109.47736 * 299.99673 * 20 18 17 37 37 H 1.09004 * 109.47400 * 60.00097 * 20 18 17 38 38 H 0.97000 * 119.99641 * 0.02562 * 22 21 20 39 39 H 0.96996 * 119.99812 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.16282 * 177.23910 * 24 15 14 41 41 H 1.09000 * 109.16340 * 58.04425 * 24 15 14 42 42 H 1.09002 * 109.95730 * 298.15595 * 27 9 7 43 43 H 1.09000 * 109.96260 * 59.39715 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1455 -2.5335 0.0064 11 6 -0.3855 -3.9353 -0.5819 12 1 -0.2552 -3.8866 -1.6630 13 6 -1.7564 -4.4788 -0.2701 14 6 -1.9444 -4.7154 1.2280 15 6 -0.8712 -5.7074 1.6918 16 1 -0.9303 -6.6176 1.0951 17 7 -1.0761 -6.0305 3.1060 18 6 -1.9399 -7.0039 3.4565 19 8 -2.5473 -7.6126 2.6012 20 6 -2.1512 -7.3357 4.9112 21 6 -3.1586 -8.4501 5.0311 22 7 -3.5064 -8.9163 6.2469 23 8 -3.6557 -8.9281 4.0334 24 6 0.4972 -5.0584 1.5061 25 6 0.7657 -4.7543 0.0309 26 1 0.9863 -5.6515 -0.5475 27 6 1.9322 -3.7290 -0.0005 28 1 -0.4849 0.8401 0.0004 29 1 -0.5302 -2.4757 1.0246 30 1 -0.6076 -1.7717 -0.6214 31 1 -2.5073 -3.7678 -0.6145 32 1 -1.8933 -5.4221 -0.7988 33 1 -1.8330 -3.7742 1.7662 34 1 -2.9352 -5.1304 1.4136 35 1 -0.5902 -5.5439 3.7900 36 1 -1.2059 -7.6510 5.3530 37 1 -2.5210 -6.4543 5.4351 38 1 -3.1085 -8.5343 7.0448 39 1 -4.1545 -9.6338 6.3240 40 1 1.2673 -5.7344 1.8779 41 1 0.5328 -4.1294 2.0751 42 1 2.5261 -3.8686 -0.9039 43 1 2.5608 -3.8530 0.8813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675636060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:18 Heat of formation + Delta-G solvation = -57.656198 kcal Electronic energy + Delta-G solvation = -24433.281473 eV Core-core repulsion = 20899.462051 eV Total energy + Delta-G solvation = -3533.819421 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41686 -39.44427 -38.24586 -35.35913 -33.92251 -33.38840 -31.93765 -31.06249 -29.86283 -28.51486 -26.05087 -24.89840 -22.44825 -22.06943 -21.00138 -20.34341 -19.68359 -18.27693 -17.58181 -17.34332 -16.82532 -16.07322 -15.96242 -15.69122 -15.15956 -14.59586 -14.26106 -13.93484 -13.75807 -13.49910 -13.44007 -13.23950 -12.42964 -12.36354 -12.21229 -11.92128 -11.83529 -11.28139 -11.10077 -10.98687 -10.85922 -10.58844 -10.47925 -10.32610 -10.00339 -9.90317 -9.78208 -9.71781 -9.64914 -9.35506 -9.27310 -8.78445 -8.60175 -6.78574 -5.63608 -3.03951 2.43687 2.74782 2.88332 3.39576 3.45363 3.47683 3.54724 4.40984 4.50599 4.74932 4.91669 4.98507 5.07337 5.13470 5.33836 5.50471 5.51437 5.64998 5.69471 5.82843 5.90006 5.93419 5.97759 6.13029 6.35548 6.42496 6.51558 6.52534 6.54705 6.59196 6.68581 6.75602 6.79846 6.94081 7.03586 7.07400 7.58669 7.60063 7.67097 7.90816 8.06822 8.36449 8.38041 9.24337 9.85547 10.51831 11.40682 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.003194 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.112915 B = 8764.203960 C = 9006.968499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.912 3.088 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.165 3.835 11 C -0.114 4.114 12 H 0.063 0.937 13 C -0.096 4.096 14 C -0.125 4.125 15 C 0.149 3.851 16 H 0.084 0.916 17 N -0.726 5.726 18 C 0.510 3.490 19 O -0.499 6.499 20 C -0.169 4.169 21 C 0.515 3.485 22 N -0.862 5.862 23 O -0.496 6.496 24 C -0.112 4.112 25 C -0.089 4.089 26 H 0.075 0.925 27 C 0.138 3.862 28 H 0.250 0.750 29 H 0.015 0.985 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.397 0.603 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.399 0.601 39 H 0.402 0.598 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.019 0.981 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 -14.193 12.793 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.208 4.208 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.040 3.960 11 C -0.133 4.133 12 H 0.081 0.919 13 C -0.134 4.134 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.102 0.898 17 N -0.378 5.378 18 C 0.293 3.707 19 O -0.371 6.371 20 C -0.212 4.212 21 C 0.297 3.703 22 N -0.428 5.428 23 O -0.367 6.367 24 C -0.151 4.151 25 C -0.109 4.109 26 H 0.093 0.907 27 C 0.012 3.988 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.231 0.769 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.227 0.773 39 H 0.232 0.768 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.037 0.963 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.135 -14.607 11.351 18.956 hybrid contribution 0.763 1.115 1.044 1.707 sum -3.372 -13.492 12.394 18.629 Atomic orbital electron populations 1.69847 1.04803 1.24511 1.57835 1.24773 0.95716 0.97604 1.02702 0.86033 0.78643 0.83825 0.77209 1.20617 1.21812 1.21857 1.19117 0.90469 0.82568 1.42676 0.90607 1.44632 1.02072 0.99674 1.86853 1.21790 0.84345 0.91505 0.98316 1.21756 0.92681 0.98720 1.00175 0.91872 1.20767 0.97333 1.00251 0.95087 1.21930 0.98100 0.99236 0.97081 1.20996 0.95667 0.98367 0.80439 0.89792 1.46122 1.44688 1.37800 1.09236 1.19881 0.80290 0.80457 0.90094 1.90859 1.45467 1.49699 1.51112 1.21616 1.01546 1.00272 0.97756 1.20043 0.82896 0.83873 0.83499 1.43880 1.48696 1.42104 1.08152 1.90922 1.52612 1.57452 1.35721 1.21747 0.94532 1.00832 0.97938 1.22049 0.97127 0.97451 0.94262 0.90706 1.21603 0.93574 0.86026 0.97580 0.93898 0.96726 0.88231 0.91804 0.92848 0.91037 0.92205 0.76913 0.86151 0.86055 0.77339 0.76760 0.92378 0.90533 0.96294 0.95998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.11 55.49 0.56 -26.04 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.22 -6.07 10.28 -15.06 -0.15 -6.22 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.61 -15.24 3.41 -169.62 -0.58 -15.82 16 10 C 0.16 3.89 4.79 -2.85 -0.01 3.88 16 11 C -0.11 -2.14 2.81 -90.76 -0.26 -2.40 16 12 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 13 C -0.10 -1.58 5.37 -27.96 -0.15 -1.73 16 14 C -0.12 -1.98 5.40 -26.65 -0.14 -2.12 16 15 C 0.15 2.15 2.42 -67.97 -0.16 1.99 16 16 H 0.08 1.34 7.60 -51.93 -0.39 0.94 16 17 N -0.73 -8.54 5.10 -53.84 -0.27 -8.82 16 18 C 0.51 6.61 7.79 -10.99 -0.09 6.52 16 19 O -0.50 -9.14 13.86 -18.96 -0.26 -9.40 16 20 C -0.17 -1.31 6.19 -29.04 -0.18 -1.49 16 21 C 0.51 5.35 8.09 -10.98 -0.09 5.26 16 22 N -0.86 -4.72 8.87 31.22 0.28 -4.44 16 23 O -0.50 -8.22 15.02 -18.96 -0.28 -8.51 16 24 C -0.11 -1.69 4.10 -26.94 -0.11 -1.80 16 25 C -0.09 -1.53 3.61 -88.86 -0.32 -1.85 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 C 0.14 2.84 6.54 -2.43 -0.02 2.82 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.01 0.37 6.15 -51.93 -0.32 0.05 16 30 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.21 6.80 -51.93 -0.35 0.86 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 3.54 8.60 -40.82 -0.35 3.19 16 36 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.40 0.74 8.83 -40.82 -0.36 0.38 16 39 H 0.40 2.01 8.93 -40.82 -0.36 1.64 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.30 7.16 -51.93 -0.37 0.93 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -36.78 337.29 -8.86 -45.63 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.58 Total: 2.98 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.78 Total: 2.41 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.01 Total: -55.13 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.55 Total: -17.91 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.78 -8.86 -45.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675636060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.022 kcal (2) G-P(sol) polarization free energy of solvation -36.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds