Wall clock time and date at job start Tue Mar 31 2020 04:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00365 * 2 1 4 4 H 1.48497 * 109.47452 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47251 * 300.00366 * 3 2 1 6 6 H 1.48501 * 109.47086 * 60.00476 * 3 2 1 7 7 C 1.38813 * 119.99330 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99895 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00564 * 359.97438 * 7 2 1 10 10 C 1.47818 * 125.64574 * 359.69638 * 9 7 2 11 11 C 1.53902 * 104.06210 * 156.91204 * 10 9 7 12 12 H 1.08995 * 108.65250 * 282.92954 * 11 10 9 13 13 C 1.50733 * 113.02794 * 161.47140 * 11 10 9 14 14 C 1.52828 * 111.74835 * 294.86534 * 13 11 10 15 15 C 1.53336 * 108.08991 * 301.08057 * 14 13 11 16 16 H 1.08996 * 109.67706 * 304.36497 * 15 14 13 17 17 N 1.46508 * 109.67643 * 183.85807 * 15 14 13 18 18 C 1.34775 * 119.99852 * 84.99970 * 17 15 14 19 19 O 1.21285 * 120.00014 * 0.02562 * 18 17 15 20 20 C 1.50694 * 119.99677 * 180.02562 * 18 17 15 21 21 C 1.50702 * 109.47105 * 179.97438 * 20 18 17 22 22 N 1.34782 * 120.00272 * 179.97438 * 21 20 18 23 23 O 1.21283 * 119.99845 * 0.02562 * 21 20 18 24 24 C 1.52584 * 108.40521 * 64.13155 * 15 14 13 25 25 C 1.53003 * 111.05418 * 297.64142 * 24 15 14 26 26 H 1.09005 * 112.55223 * 286.29959 * 25 24 15 27 27 C 1.47176 * 125.65247 * 180.02562 * 9 7 2 28 28 H 0.97001 * 119.99226 * 359.97438 * 1 2 3 29 29 H 1.09005 * 110.51090 * 275.55297 * 10 9 7 30 30 H 1.08994 * 110.51775 * 38.26813 * 10 9 7 31 31 H 1.09000 * 109.02522 * 55.44724 * 13 11 10 32 32 H 1.08997 * 109.02766 * 174.27767 * 13 11 10 33 33 H 1.08995 * 109.74085 * 60.73036 * 14 13 11 34 34 H 1.09004 * 109.73793 * 181.38708 * 14 13 11 35 35 H 0.96997 * 119.99946 * 265.00353 * 17 15 14 36 36 H 1.08999 * 109.47736 * 299.99673 * 20 18 17 37 37 H 1.09004 * 109.47400 * 60.00097 * 20 18 17 38 38 H 0.97000 * 119.99641 * 0.02562 * 22 21 20 39 39 H 0.96996 * 119.99812 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.16282 * 177.23910 * 24 15 14 41 41 H 1.09000 * 109.16340 * 58.04425 * 24 15 14 42 42 H 1.09002 * 109.95730 * 298.15595 * 27 9 7 43 43 H 1.09000 * 109.96260 * 59.39715 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1455 -2.5335 0.0064 11 6 -0.3855 -3.9353 -0.5819 12 1 -0.2552 -3.8866 -1.6630 13 6 -1.7564 -4.4788 -0.2701 14 6 -1.9444 -4.7154 1.2280 15 6 -0.8712 -5.7074 1.6918 16 1 -0.9303 -6.6176 1.0951 17 7 -1.0761 -6.0305 3.1060 18 6 -1.9399 -7.0039 3.4565 19 8 -2.5473 -7.6126 2.6012 20 6 -2.1512 -7.3357 4.9112 21 6 -3.1586 -8.4501 5.0311 22 7 -3.5064 -8.9163 6.2469 23 8 -3.6557 -8.9281 4.0334 24 6 0.4972 -5.0584 1.5061 25 6 0.7657 -4.7543 0.0309 26 1 0.9863 -5.6515 -0.5475 27 6 1.9322 -3.7290 -0.0005 28 1 -0.4849 0.8401 0.0004 29 1 -0.5302 -2.4757 1.0246 30 1 -0.6076 -1.7717 -0.6214 31 1 -2.5073 -3.7678 -0.6145 32 1 -1.8933 -5.4221 -0.7988 33 1 -1.8330 -3.7742 1.7662 34 1 -2.9352 -5.1304 1.4136 35 1 -0.5902 -5.5439 3.7900 36 1 -1.2059 -7.6510 5.3530 37 1 -2.5210 -6.4543 5.4351 38 1 -3.1085 -8.5343 7.0448 39 1 -4.1545 -9.6338 6.3240 40 1 1.2673 -5.7344 1.8779 41 1 0.5328 -4.1294 2.0751 42 1 2.5261 -3.8686 -0.9039 43 1 2.5608 -3.8530 0.8813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675636060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:17 Heat of formation + Delta-G solvation = -86.065251 kcal Electronic energy + Delta-G solvation = -24434.513382 eV Core-core repulsion = 20899.462051 eV Total energy + Delta-G solvation = -3535.051330 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46913 -40.66576 -39.33971 -36.82206 -34.98900 -34.54540 -33.62238 -32.17670 -31.23155 -29.92603 -27.64368 -26.77061 -23.67664 -23.45946 -22.23636 -21.51437 -20.96476 -19.61762 -18.83400 -18.38355 -18.12855 -17.09093 -16.91379 -16.76601 -16.52189 -16.34038 -15.66554 -15.38394 -14.87247 -14.74914 -14.66045 -14.32455 -14.03648 -13.82786 -13.69231 -13.35562 -13.00526 -12.90761 -12.77887 -12.62754 -12.52376 -12.14883 -11.99264 -11.82906 -11.59534 -11.34220 -11.13120 -11.08100 -10.92274 -10.65704 -10.54515 -10.42856 -9.90873 -8.81021 -7.73845 -5.16351 1.47470 1.48450 1.58497 1.70089 1.81916 2.06573 2.51970 2.84353 3.36380 3.62739 3.67501 3.75826 3.85710 4.01634 4.19776 4.21758 4.29688 4.37818 4.45701 4.52548 4.54992 4.60186 4.65282 4.74440 4.88799 4.99047 5.04273 5.10273 5.18443 5.28125 5.32648 5.41247 5.52503 5.62495 5.64444 5.77973 5.91272 5.99390 6.34604 6.55936 6.69997 7.15049 7.39044 7.53253 7.83328 8.48475 9.28445 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.003194 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.112915 B = 8764.203960 C = 9006.968499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.174 3.826 11 C -0.102 4.102 12 H 0.054 0.946 13 C -0.092 4.092 14 C -0.118 4.118 15 C 0.159 3.841 16 H 0.076 0.924 17 N -0.715 5.715 18 C 0.503 3.497 19 O -0.557 6.557 20 C -0.157 4.157 21 C 0.507 3.493 22 N -0.837 5.837 23 O -0.569 6.569 24 C -0.101 4.101 25 C -0.078 4.078 26 H 0.104 0.896 27 C 0.133 3.867 28 H 0.244 0.756 29 H -0.002 1.002 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.414 0.586 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.420 0.580 39 H 0.406 0.594 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -15.267 14.913 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.354 5.354 10 C 0.050 3.950 11 C -0.121 4.121 12 H 0.072 0.928 13 C -0.131 4.131 14 C -0.156 4.156 15 C 0.054 3.946 16 H 0.094 0.906 17 N -0.368 5.368 18 C 0.289 3.711 19 O -0.433 6.433 20 C -0.199 4.199 21 C 0.291 3.709 22 N -0.403 5.403 23 O -0.446 6.446 24 C -0.139 4.139 25 C -0.098 4.098 26 H 0.122 0.878 27 C 0.008 3.992 28 H 0.054 0.946 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.251 0.749 36 H 0.182 0.818 37 H 0.177 0.823 38 H 0.252 0.748 39 H 0.237 0.763 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.768 -15.684 13.572 20.924 hybrid contribution 0.367 1.444 0.429 1.550 sum -2.401 -14.240 14.001 20.114 Atomic orbital electron populations 1.70110 1.06106 1.24674 1.58895 1.25588 0.96596 1.00793 1.03130 0.85024 0.78117 0.79675 0.76613 1.19172 1.22214 1.21918 1.19473 0.90928 0.83881 1.41966 0.90315 1.44925 1.02849 1.00842 1.86770 1.21481 0.83665 0.93211 0.96678 1.21585 0.94795 0.96411 0.99340 0.92789 1.20723 0.95662 1.00679 0.95992 1.21826 0.98536 0.98921 0.96335 1.20697 0.94563 0.97220 0.82157 0.90634 1.45967 1.44630 1.37696 1.08478 1.20771 0.79015 0.79391 0.91956 1.90849 1.47566 1.51667 1.53249 1.21665 1.03065 1.00849 0.94286 1.20555 0.82716 0.83986 0.83614 1.43674 1.47702 1.41263 1.07653 1.90906 1.55431 1.60002 1.38304 1.21602 0.95663 1.00486 0.96119 1.22069 0.94417 0.97195 0.96069 0.87821 1.21799 0.94829 0.84790 0.97813 0.94585 0.98444 0.92374 0.92581 0.91093 0.92515 0.92736 0.74907 0.81792 0.82318 0.74821 0.76327 0.89651 0.92513 0.96282 0.95003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.49 10.11 21.65 0.22 -56.27 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 3 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.23 -12.99 10.28 84.03 0.86 -12.13 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.63 -31.88 3.41 -690.55 -2.35 -34.23 16 10 C 0.17 8.47 4.79 86.43 0.41 8.88 16 11 C -0.10 -3.82 2.81 -10.89 -0.03 -3.86 16 12 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 13 C -0.09 -3.03 5.37 29.80 0.16 -2.87 16 14 C -0.12 -3.69 5.40 30.65 0.17 -3.52 16 15 C 0.16 4.32 2.42 44.96 0.11 4.43 16 16 H 0.08 2.27 7.60 -2.39 -0.02 2.26 16 17 N -0.71 -15.13 5.10 -442.65 -2.26 -17.38 16 18 C 0.50 12.10 7.79 87.66 0.68 12.78 16 19 O -0.56 -20.36 13.86 20.40 0.28 -20.08 16 20 C -0.16 -1.86 6.19 29.10 0.18 -1.68 16 21 C 0.51 9.57 8.09 87.66 0.71 10.28 16 22 N -0.84 -6.84 8.87 -173.52 -1.54 -8.38 16 23 O -0.57 -19.03 15.02 20.40 0.31 -18.73 16 24 C -0.10 -2.80 4.10 30.46 0.12 -2.67 16 25 C -0.08 -2.53 3.61 -9.65 -0.03 -2.57 16 26 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 27 C 0.13 5.30 6.54 87.05 0.57 5.86 16 28 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.00 -0.12 6.15 -2.38 -0.01 -0.13 16 30 H 0.06 3.32 5.95 -2.39 -0.01 3.31 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 1.94 6.80 -2.39 -0.02 1.93 16 34 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.41 6.01 8.60 -92.71 -0.80 5.22 16 36 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.16 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.42 -0.12 8.83 -92.71 -0.82 -0.93 16 39 H 0.41 3.23 8.93 -92.71 -0.83 2.40 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.06 1.84 7.16 -2.39 -0.02 1.82 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.03 1.22 7.74 -2.39 -0.02 1.20 16 Total: -1.00 -85.37 337.29 -0.32 -85.70 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -1.39 Total: 12.24 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 4.38 Total: 9.51 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -5.93 Total: -116.27 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: 0.59 Total: -38.81 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -85.37 -0.32 -85.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675636060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.369 kcal (2) G-P(sol) polarization free energy of solvation -85.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds