Wall clock time and date at job start Tue Mar 31 2020 04:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 120.00200 * 2 1 4 4 H 1.48505 * 109.46931 * 270.00004 * 3 2 1 5 5 H 1.48492 * 109.47172 * 30.00210 * 3 2 1 6 6 H 1.48497 * 109.46811 * 150.00138 * 3 2 1 7 7 C 1.38953 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99908 * 0.02562 * 7 2 1 9 9 N 1.37096 * 120.00235 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99879 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00486 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99581 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47017 * 180.02562 * 12 10 9 14 14 C 1.46903 * 111.00053 * 179.97438 * 13 12 10 15 15 H 1.08994 * 112.84913 * 23.81130 * 14 13 12 16 16 C 1.53781 * 113.61225 * 155.00094 * 14 13 12 17 17 C 1.53776 * 87.08216 * 140.06590 * 16 14 13 18 18 H 1.09003 * 113.61301 * 89.19654 * 17 16 14 19 19 N 1.46499 * 113.61859 * 220.01932 * 17 16 14 20 20 C 1.34777 * 120.00199 * 203.47296 * 19 17 16 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 17 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 17 23 23 C 1.52996 * 109.47159 * 179.72352 * 22 20 19 24 24 C 1.52999 * 117.49713 * 243.62267 * 23 22 20 25 25 C 1.52998 * 117.49938 * 174.99929 * 23 22 20 26 26 C 1.53779 * 87.17037 * 334.60941 * 17 16 14 27 27 H 0.97005 * 119.99531 * 359.97438 * 1 2 3 28 28 H 0.97004 * 119.99791 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46910 * 60.00612 * 12 10 9 30 30 H 1.08999 * 109.47400 * 300.00545 * 12 10 9 31 31 H 1.00904 * 111.00194 * 303.95722 * 13 12 10 32 32 H 1.08999 * 113.61621 * 25.51792 * 16 14 13 33 33 H 1.09000 * 113.61562 * 254.61608 * 16 14 13 34 34 H 0.97000 * 119.99484 * 23.46393 * 19 17 16 35 35 H 1.09004 * 109.46965 * 299.72211 * 22 20 19 36 36 H 1.08994 * 109.46990 * 59.72065 * 22 20 19 37 37 H 1.09005 * 115.54866 * 29.32513 * 23 22 20 38 38 H 1.08998 * 117.50182 * 359.97438 * 24 23 22 39 39 H 1.08999 * 117.49718 * 145.02055 * 24 23 22 40 40 H 1.09004 * 117.49500 * 214.97595 * 25 23 22 41 41 H 1.08998 * 117.50079 * 0.02562 * 25 23 22 42 42 H 1.09003 * 113.61529 * 139.93853 * 26 17 16 43 43 H 1.09000 * 113.61712 * 270.83911 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3798 -1.2035 -0.0011 10 6 4.0536 -2.3707 -0.0011 11 8 3.4471 -3.4211 -0.0011 12 6 5.5606 -2.3708 -0.0011 13 7 6.0502 -3.7558 -0.0017 14 6 7.5187 -3.7950 -0.0023 15 1 7.9665 -2.8879 0.4033 16 6 8.1006 -5.0883 0.5925 17 6 9.1494 -5.0401 -0.5310 18 1 10.0437 -4.4743 -0.2695 19 7 9.4544 -6.3525 -1.1060 20 6 10.6326 -6.5589 -1.7271 21 8 11.4401 -5.6579 -1.8104 22 6 10.9437 -7.9073 -2.3239 23 6 12.3302 -7.8715 -2.9697 24 6 12.4103 -8.0817 -4.4831 25 6 12.8818 -9.1833 -3.5317 26 6 8.1265 -4.2325 -1.3473 27 1 -0.4850 0.8401 0.0004 28 1 3.8649 -0.3634 -0.0007 29 1 5.9239 -1.8570 0.8890 30 1 5.9240 -1.8569 -0.8910 31 1 5.6747 -4.2725 0.7794 32 1 7.4266 -5.9422 0.5243 33 1 8.5223 -4.9593 1.5893 34 1 8.8084 -7.0731 -1.0395 35 1 10.9275 -8.6642 -1.5397 36 1 10.1970 -8.1511 -3.0796 37 1 13.0409 -7.1786 -2.5192 38 1 11.4752 -8.2459 -5.0186 39 1 13.1737 -7.5270 -5.0285 40 1 13.9555 -9.3532 -3.4513 41 1 12.2568 -10.0717 -3.4418 42 1 8.5692 -3.4136 -1.9145 43 1 7.4596 -4.8520 -1.9470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690320819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:58 Heat of formation + Delta-G solvation = -26.400464 kcal Electronic energy + Delta-G solvation = -22520.153606 eV Core-core repulsion = 18987.689535 eV Total energy + Delta-G solvation = -3532.464071 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.40401 -39.01757 -38.21032 -37.25177 -34.67938 -33.90824 -32.68924 -31.64741 -29.79307 -27.03044 -25.85761 -24.32096 -23.02101 -22.72929 -21.28702 -20.49510 -19.84641 -19.32013 -18.31661 -17.44236 -16.88209 -16.08987 -15.64289 -15.55840 -15.35920 -15.22510 -14.76526 -14.40247 -14.06791 -13.88878 -13.43626 -13.20477 -13.02130 -12.62101 -12.56931 -12.18717 -12.10418 -11.90651 -11.88011 -11.81928 -11.35106 -11.14054 -11.05774 -10.74360 -10.68194 -10.59687 -10.40435 -9.99332 -9.96495 -9.58013 -9.22052 -8.58783 -8.21253 -8.16105 -6.31863 -3.83285 2.39939 2.89092 3.02148 3.06923 3.14869 3.45201 3.73346 4.09160 4.15435 4.29945 4.30877 4.39550 4.43009 4.55453 4.72362 4.75198 4.80847 4.97432 5.05759 5.15403 5.21236 5.24276 5.27443 5.37548 5.51106 5.53578 5.61498 5.65583 5.74337 5.74894 5.86032 5.89946 5.93271 5.96730 6.07454 6.38383 7.12531 7.27761 7.55009 7.57889 7.99842 8.13712 8.59018 8.94151 9.41767 9.81885 10.81215 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.037929 B = 0.002066 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.045024 B =13549.720450 C =13617.459549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.119 0.881 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.566 6.566 12 C 0.047 3.953 13 N -0.654 5.654 14 C 0.062 3.938 15 H 0.075 0.925 16 C -0.148 4.148 17 C 0.122 3.878 18 H 0.112 0.888 19 N -0.719 5.719 20 C 0.515 3.485 21 O -0.541 6.541 22 C -0.112 4.112 23 C -0.141 4.141 24 C -0.179 4.179 25 C -0.181 4.181 26 C -0.137 4.137 27 H 0.273 0.727 28 H 0.371 0.629 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.352 0.648 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.402 0.598 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.460 -13.389 -2.551 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.448 6.448 12 C -0.086 4.086 13 N -0.287 5.287 14 C -0.050 4.050 15 H 0.093 0.907 16 C -0.187 4.187 17 C 0.016 3.984 18 H 0.130 0.870 19 N -0.370 5.370 20 C 0.302 3.698 21 O -0.417 6.417 22 C -0.152 4.152 23 C -0.160 4.160 24 C -0.215 4.215 25 C -0.218 4.218 26 C -0.177 4.177 27 H 0.084 0.916 28 H 0.203 0.797 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.173 0.827 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 24.353 -13.398 -3.280 27.988 hybrid contribution 0.329 1.414 0.904 1.711 sum 24.683 -11.983 -2.375 27.540 Atomic orbital electron populations 1.69625 1.05643 1.27497 1.49346 1.25044 0.95503 0.97994 0.97633 0.86664 0.79733 0.84007 0.78933 1.19575 1.20185 1.19537 1.19433 0.79260 0.96630 1.48102 0.86291 1.42213 1.07542 1.06187 1.67047 1.19722 0.88223 0.84552 0.83966 1.90558 1.69465 1.30949 1.53803 1.21779 0.94952 0.90602 1.01286 1.60178 1.04892 1.12675 1.50941 1.22836 0.88443 0.96623 0.97052 0.90716 1.23612 0.97758 0.99124 0.98169 1.22362 0.97220 0.84316 0.94483 0.86966 1.46003 1.18689 1.14233 1.58036 1.20623 0.81294 0.90244 0.77627 1.90689 1.47772 1.45114 1.58170 1.21240 0.97315 0.95258 1.01373 1.22054 0.97363 1.00424 0.96133 1.23044 1.03336 1.02645 0.92524 1.23005 1.01426 0.92744 1.04648 1.23604 0.96986 0.99910 0.97171 0.91612 0.79674 0.93669 0.89452 0.82742 0.88618 0.90782 0.76334 0.88467 0.88666 0.86425 0.88759 0.88735 0.88694 0.88739 0.91362 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.38 27.74 -169.99 -4.71 14.67 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 7 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 N -0.59 -14.06 5.09 -10.96 -0.06 -14.11 16 10 C 0.45 10.15 7.82 -10.99 -0.09 10.06 16 11 O -0.57 -15.08 15.78 5.55 0.09 -14.99 16 12 C 0.05 0.76 6.01 -4.98 -0.03 0.73 16 13 N -0.65 -9.67 6.19 -107.04 -0.66 -10.33 16 14 C 0.06 0.68 4.14 -66.81 -0.28 0.41 16 15 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 16 C -0.15 -1.30 7.40 -25.92 -0.19 -1.49 16 17 C 0.12 1.15 4.21 -67.12 -0.28 0.86 16 18 H 0.11 1.18 7.50 -51.93 -0.39 0.79 16 19 N -0.72 -5.89 5.36 -53.02 -0.28 -6.17 16 20 C 0.52 5.00 7.83 -10.98 -0.09 4.92 16 21 O -0.54 -7.44 15.18 5.55 0.08 -7.36 16 22 C -0.11 -0.73 5.98 -27.88 -0.17 -0.90 16 23 C -0.14 -1.08 5.41 -90.62 -0.49 -1.57 16 24 C -0.18 -1.23 10.18 -26.73 -0.27 -1.50 16 25 C -0.18 -1.07 10.25 -26.73 -0.27 -1.35 16 26 C -0.14 -1.50 7.70 -25.83 -0.20 -1.70 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 29 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.35 5.32 8.25 -39.29 -0.32 5.00 16 32 H 0.10 0.82 8.11 -51.93 -0.42 0.40 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.40 2.32 8.71 -40.82 -0.36 1.97 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.50 7.87 -51.93 -0.41 0.09 16 37 H 0.12 1.12 7.31 -51.93 -0.38 0.74 16 38 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -34.46 361.00 -8.63 -43.10 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -6.70 Total: 14.02 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.60 Total: 0.70 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.23 Total: -55.58 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.17 Total: -22.35 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.46 -8.63 -43.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690320819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.696 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds