Wall clock time and date at job start Tue Mar 31 2020 04:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99952 * 2 1 4 4 H 1.48499 * 109.46791 * 239.99792 * 3 2 1 5 5 H 1.48493 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46963 * 119.99916 * 3 2 1 7 7 C 1.38809 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99968 * 197.36046 * 7 2 1 9 9 N 1.36938 * 120.00605 * 17.36154 * 7 2 1 10 10 C 1.46924 * 120.63373 * 207.68056 * 9 7 2 11 11 C 1.53186 * 108.77537 * 233.60463 * 10 9 7 12 12 C 1.53038 * 109.31460 * 305.36702 * 11 10 9 13 13 C 1.53039 * 109.54040 * 61.36401 * 12 11 10 14 14 H 1.08997 * 109.49392 * 58.58715 * 13 12 11 15 15 N 1.46500 * 109.49902 * 178.65268 * 13 12 11 16 16 C 1.34772 * 119.99756 * 204.93596 * 15 13 12 17 17 O 1.21348 * 120.00211 * 359.97438 * 16 15 13 18 18 C 1.49452 * 119.99863 * 179.97438 * 16 15 13 19 19 O 1.21348 * 119.99926 * 359.97438 * 18 16 15 20 20 N 1.34774 * 120.00233 * 180.02562 * 18 16 15 21 21 C 1.46500 * 120.00126 * 180.02562 * 20 18 16 22 22 C 1.53004 * 109.47168 * 179.97438 * 21 20 18 23 23 C 1.52998 * 117.49634 * 243.62245 * 22 21 20 24 24 C 1.52995 * 117.49908 * 174.99961 * 22 21 20 25 25 C 1.46926 * 120.62565 * 27.67737 * 9 7 2 26 26 H 0.96995 * 119.99770 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.58398 * 113.81657 * 10 9 7 28 28 H 1.09007 * 109.70397 * 353.46582 * 10 9 7 29 29 H 1.08996 * 109.49936 * 185.40991 * 11 10 9 30 30 H 1.09005 * 109.52346 * 65.33341 * 11 10 9 31 31 H 1.09003 * 109.45877 * 301.34052 * 12 11 10 32 32 H 1.08997 * 109.45781 * 181.38670 * 12 11 10 33 33 H 0.97002 * 119.99450 * 24.93295 * 15 13 12 34 34 H 0.97005 * 119.99631 * 359.97438 * 20 18 16 35 35 H 1.08998 * 109.47013 * 299.99898 * 21 20 18 36 36 H 1.08997 * 109.46909 * 59.99707 * 21 20 18 37 37 H 1.08998 * 115.54693 * 29.32920 * 22 21 20 38 38 H 1.08994 * 117.50094 * 0.02562 * 23 22 21 39 39 H 1.09000 * 117.49585 * 145.02335 * 23 22 21 40 40 H 1.09000 * 117.49966 * 214.97650 * 24 22 21 41 41 H 1.09000 * 117.50132 * 0.02562 * 24 22 21 42 42 H 1.08996 * 109.58842 * 6.60691 * 25 9 7 43 43 H 1.08996 * 109.58482 * 246.17810 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2796 9 7 1.3724 -2.3613 -0.3528 10 6 1.8193 -3.6547 0.1819 11 6 2.0746 -4.6102 -0.9879 12 6 0.8190 -4.6903 -1.8593 13 6 0.5010 -3.3053 -2.4274 14 1 1.3497 -2.9477 -3.0104 15 7 -0.6823 -3.3893 -3.2871 16 6 -0.8688 -2.4832 -4.2672 17 8 -0.0568 -1.5975 -4.4373 18 6 -2.0756 -2.5692 -5.1446 19 8 -2.8873 -3.4551 -4.9748 20 7 -2.2619 -1.6634 -6.1250 21 6 -3.4451 -1.7474 -6.9847 22 6 -3.4149 -0.6090 -8.0066 23 6 -4.5342 0.4318 -7.9378 24 6 -4.5090 -0.5904 -9.0759 25 6 0.2279 -2.3350 -1.2738 26 1 -0.4849 0.8400 -0.0004 27 1 1.0469 -4.0687 0.8300 28 1 2.7394 -3.5192 0.7505 29 1 2.3139 -5.6013 -0.6027 30 1 2.9086 -4.2407 -1.5847 31 1 -0.0202 -5.0368 -1.2560 32 1 0.9896 -5.3885 -2.6787 33 1 -1.3314 -4.0971 -3.1508 34 1 -1.6128 -0.9554 -6.2610 35 1 -3.4480 -2.7044 -7.5064 36 1 -4.3443 -1.6636 -6.3744 37 1 -2.4226 -0.2632 -8.2958 38 1 -5.2917 0.3059 -7.1644 39 1 -4.2782 1.4629 -8.1818 40 1 -4.2366 -0.2319 -10.0685 41 1 -5.2506 -1.3889 -9.0512 42 1 0.0985 -1.3268 -1.6672 43 1 -0.6742 -2.6414 -0.7444 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692104472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:20 Heat of formation + Delta-G solvation = -27.448992 kcal Electronic energy + Delta-G solvation = -23997.653854 eV Core-core repulsion = 20465.144315 eV Total energy + Delta-G solvation = -3532.509539 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43769 -38.75613 -37.71690 -37.19606 -34.71689 -33.85783 -32.65849 -30.07222 -29.13787 -27.81136 -25.28299 -24.10350 -22.71708 -22.19358 -21.49821 -21.29406 -19.94960 -19.41451 -18.09167 -16.92762 -16.69732 -16.12317 -15.73840 -15.32230 -14.84057 -14.75459 -14.25291 -14.12444 -13.95679 -13.63734 -13.48508 -13.13340 -12.84607 -12.40896 -12.33952 -11.93346 -11.86291 -11.76658 -11.48537 -11.02599 -10.83113 -10.78157 -10.70667 -10.53828 -10.48866 -10.26733 -9.99771 -9.95041 -9.56365 -9.28355 -9.25563 -8.67234 -8.43919 -6.67384 -5.76412 -3.19736 1.67290 2.52238 3.40562 3.42300 3.48222 3.50262 3.50403 3.86073 4.29469 4.52561 4.55557 4.62095 4.74402 4.91015 5.28950 5.32546 5.33317 5.38157 5.42793 5.52740 5.56532 5.60494 5.67241 5.77657 5.81044 6.03897 6.13827 6.18458 6.29674 6.41152 6.43646 6.66322 6.71624 6.80974 6.95071 7.08105 7.26949 7.65168 7.68863 7.82167 7.95061 8.34675 8.47049 9.21579 9.85703 10.40609 11.31666 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.003963 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.625103 B = 7063.552411 C = 8540.166164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.141 3.859 11 C -0.130 4.130 12 C -0.117 4.117 13 C 0.114 3.886 14 H 0.086 0.914 15 N -0.687 5.687 16 C 0.503 3.497 17 O -0.515 6.515 18 C 0.510 3.490 19 O -0.526 6.526 20 N -0.702 5.702 21 C 0.150 3.850 22 C -0.173 4.173 23 C -0.176 4.176 24 C -0.170 4.170 25 C 0.166 3.834 26 H 0.254 0.746 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.405 0.595 34 H 0.414 0.586 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.461 -5.490 -14.585 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.015 3.985 11 C -0.170 4.170 12 C -0.155 4.155 13 C 0.009 3.991 14 H 0.104 0.896 15 N -0.339 5.339 16 C 0.282 3.718 17 O -0.390 6.390 18 C 0.291 3.709 19 O -0.402 6.402 20 N -0.356 5.356 21 C 0.026 3.974 22 C -0.191 4.191 23 C -0.213 4.213 24 C -0.207 4.207 25 C 0.039 3.961 26 H 0.064 0.936 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.240 0.760 34 H 0.251 0.749 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -6.559 -5.329 -14.542 16.820 hybrid contribution 0.301 0.902 -0.049 0.952 sum -6.258 -4.427 -14.592 16.483 Atomic orbital electron populations 1.70013 1.05339 1.25703 1.53248 1.25039 0.95263 0.98511 1.00448 0.86360 0.78969 0.83276 0.78116 1.20868 1.21632 1.20878 1.19114 0.92759 0.84798 1.42040 0.91560 1.43949 1.36003 1.01711 1.49369 1.20970 0.97816 0.86803 0.92899 1.22002 0.96845 0.99457 0.98712 1.21687 0.99147 0.95708 0.98965 1.22174 0.86462 0.97536 0.92936 0.89587 1.45901 1.26254 1.30064 1.31635 1.19878 0.86385 0.83340 0.82205 1.90799 1.44699 1.33298 1.70202 1.20422 0.86923 0.82101 0.81415 1.90727 1.45295 1.34284 1.69938 1.45735 1.25839 1.31430 1.32571 1.20975 0.88013 0.97709 0.90676 1.22461 0.96193 0.99761 1.00695 1.23111 1.00946 0.95770 1.01423 1.22957 1.00957 1.02359 0.94457 1.21101 0.88988 0.98793 0.87215 0.93570 0.96296 0.92529 0.92460 0.92053 0.91968 0.92861 0.76027 0.74895 0.90633 0.90816 0.86864 0.88352 0.88454 0.88393 0.88398 0.88651 0.96200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 11.19 55.49 0.62 -26.10 16 2 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 3 Si 0.90 22.30 29.59 -169.99 -5.03 17.27 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.26 -7.19 9.59 -15.06 -0.14 -7.33 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -14.86 2.99 -172.32 -0.52 -15.38 16 10 C 0.14 2.92 6.51 -3.71 -0.02 2.89 16 11 C -0.13 -2.18 6.08 -26.62 -0.16 -2.35 16 12 C -0.12 -1.90 5.35 -26.69 -0.14 -2.04 16 13 C 0.11 2.22 2.60 -67.81 -0.18 2.05 16 14 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 15 N -0.69 -11.92 5.07 -54.12 -0.27 -12.19 16 16 C 0.50 9.04 7.86 -11.59 -0.09 8.95 16 17 O -0.51 -10.73 16.14 5.50 0.09 -10.64 16 18 C 0.51 7.96 7.89 -11.59 -0.09 7.87 16 19 O -0.53 -8.87 16.48 5.50 0.09 -8.78 16 20 N -0.70 -8.79 5.55 -60.73 -0.34 -9.13 16 21 C 0.15 1.50 5.96 -4.04 -0.02 1.48 16 22 C -0.17 -1.38 5.85 -90.62 -0.53 -1.91 16 23 C -0.18 -1.30 10.18 -26.73 -0.27 -1.57 16 24 C -0.17 -1.12 10.25 -26.73 -0.27 -1.39 16 25 C 0.17 4.05 4.89 -3.71 -0.02 4.03 16 26 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 1.14 7.94 -51.93 -0.41 0.72 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.40 6.17 8.08 -40.82 -0.33 5.84 16 34 H 0.41 4.91 7.87 -40.82 -0.32 4.58 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.77 7.87 -51.93 -0.41 0.37 16 37 H 0.11 0.86 8.04 -51.93 -0.42 0.44 16 38 H 0.10 0.73 8.03 -51.93 -0.42 0.32 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 2.71 6.04 -51.93 -0.31 2.40 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -32.42 355.30 -8.83 -41.25 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.79 Total: 7.57 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -2.04 Total: 10.78 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.51 Total: -62.80 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.18 Total: -19.42 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.42 -8.83 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692104472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.800 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds