Wall clock time and date at job start Tue Mar 31 2020 04:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99952 * 2 1 4 4 H 1.48499 * 109.46791 * 239.99792 * 3 2 1 5 5 H 1.48493 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46963 * 119.99916 * 3 2 1 7 7 C 1.38809 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99968 * 197.36046 * 7 2 1 9 9 N 1.36938 * 120.00605 * 17.36154 * 7 2 1 10 10 C 1.46924 * 120.63373 * 207.68056 * 9 7 2 11 11 C 1.53186 * 108.77537 * 233.60463 * 10 9 7 12 12 C 1.53038 * 109.31460 * 305.36702 * 11 10 9 13 13 C 1.53039 * 109.54040 * 61.36401 * 12 11 10 14 14 H 1.08997 * 109.49392 * 58.58715 * 13 12 11 15 15 N 1.46500 * 109.49902 * 178.65268 * 13 12 11 16 16 C 1.34772 * 119.99756 * 204.93596 * 15 13 12 17 17 O 1.21348 * 120.00211 * 359.97438 * 16 15 13 18 18 C 1.49452 * 119.99863 * 179.97438 * 16 15 13 19 19 O 1.21348 * 119.99926 * 359.97438 * 18 16 15 20 20 N 1.34774 * 120.00233 * 180.02562 * 18 16 15 21 21 C 1.46500 * 120.00126 * 180.02562 * 20 18 16 22 22 C 1.53004 * 109.47168 * 179.97438 * 21 20 18 23 23 C 1.52998 * 117.49634 * 243.62245 * 22 21 20 24 24 C 1.52995 * 117.49908 * 174.99961 * 22 21 20 25 25 C 1.46926 * 120.62565 * 27.67737 * 9 7 2 26 26 H 0.96995 * 119.99770 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.58398 * 113.81657 * 10 9 7 28 28 H 1.09007 * 109.70397 * 353.46582 * 10 9 7 29 29 H 1.08996 * 109.49936 * 185.40991 * 11 10 9 30 30 H 1.09005 * 109.52346 * 65.33341 * 11 10 9 31 31 H 1.09003 * 109.45877 * 301.34052 * 12 11 10 32 32 H 1.08997 * 109.45781 * 181.38670 * 12 11 10 33 33 H 0.97002 * 119.99450 * 24.93295 * 15 13 12 34 34 H 0.97005 * 119.99631 * 359.97438 * 20 18 16 35 35 H 1.08998 * 109.47013 * 299.99898 * 21 20 18 36 36 H 1.08997 * 109.46909 * 59.99707 * 21 20 18 37 37 H 1.08998 * 115.54693 * 29.32920 * 22 21 20 38 38 H 1.08994 * 117.50094 * 0.02562 * 23 22 21 39 39 H 1.09000 * 117.49585 * 145.02335 * 23 22 21 40 40 H 1.09000 * 117.49966 * 214.97650 * 24 22 21 41 41 H 1.09000 * 117.50132 * 0.02562 * 24 22 21 42 42 H 1.08996 * 109.58842 * 6.60691 * 25 9 7 43 43 H 1.08996 * 109.58482 * 246.17810 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2796 9 7 1.3724 -2.3613 -0.3528 10 6 1.8193 -3.6547 0.1819 11 6 2.0746 -4.6102 -0.9879 12 6 0.8190 -4.6903 -1.8593 13 6 0.5010 -3.3053 -2.4274 14 1 1.3497 -2.9477 -3.0104 15 7 -0.6823 -3.3893 -3.2871 16 6 -0.8688 -2.4832 -4.2672 17 8 -0.0568 -1.5975 -4.4373 18 6 -2.0756 -2.5692 -5.1446 19 8 -2.8873 -3.4551 -4.9748 20 7 -2.2619 -1.6634 -6.1250 21 6 -3.4451 -1.7474 -6.9847 22 6 -3.4149 -0.6090 -8.0066 23 6 -4.5342 0.4318 -7.9378 24 6 -4.5090 -0.5904 -9.0759 25 6 0.2279 -2.3350 -1.2738 26 1 -0.4849 0.8400 -0.0004 27 1 1.0469 -4.0687 0.8300 28 1 2.7394 -3.5192 0.7505 29 1 2.3139 -5.6013 -0.6027 30 1 2.9086 -4.2407 -1.5847 31 1 -0.0202 -5.0368 -1.2560 32 1 0.9896 -5.3885 -2.6787 33 1 -1.3314 -4.0971 -3.1508 34 1 -1.6128 -0.9554 -6.2610 35 1 -3.4480 -2.7044 -7.5064 36 1 -4.3443 -1.6636 -6.3744 37 1 -2.4226 -0.2632 -8.2958 38 1 -5.2917 0.3059 -7.1644 39 1 -4.2782 1.4629 -8.1818 40 1 -4.2366 -0.2319 -10.0685 41 1 -5.2506 -1.3889 -9.0512 42 1 0.0985 -1.3268 -1.6672 43 1 -0.6742 -2.6414 -0.7444 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692104472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:19 Heat of formation + Delta-G solvation = -50.646783 kcal Electronic energy + Delta-G solvation = -23998.659785 eV Core-core repulsion = 20465.144315 eV Total energy + Delta-G solvation = -3533.515470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78537 -40.09535 -38.87525 -38.44726 -36.13630 -35.21767 -34.39707 -31.94261 -30.75322 -28.82033 -27.25654 -25.43386 -23.94971 -23.27245 -23.00009 -22.08537 -21.41980 -20.86944 -19.38126 -18.76473 -18.04229 -17.16379 -17.09119 -16.94091 -16.42756 -15.85603 -15.78773 -15.40881 -15.20928 -15.08465 -14.72293 -14.68408 -14.18139 -14.09917 -13.97775 -13.52183 -12.94892 -12.89012 -12.64611 -12.52289 -12.45607 -12.37234 -12.26643 -12.06669 -11.69289 -11.62510 -11.41755 -11.30206 -11.21492 -10.67940 -10.56240 -10.31362 -10.23820 -8.70907 -7.89677 -5.35579 0.31980 1.27899 1.42964 1.47948 1.52995 2.12578 2.47458 2.57603 2.88328 3.26227 3.39862 3.62014 3.76431 3.90583 3.94749 4.06647 4.11279 4.22551 4.23439 4.45281 4.56255 4.57170 4.64511 4.80403 4.80455 4.89653 5.01386 5.03866 5.09148 5.14687 5.18179 5.25549 5.26294 5.27096 5.31463 5.50862 5.60945 5.71039 5.90071 6.31398 6.38584 6.71060 6.95454 7.11468 7.83434 8.33224 9.15454 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.003963 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.625103 B = 7063.552411 C = 8540.166164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.266 4.266 8 H 0.070 0.930 9 N -0.608 5.608 10 C 0.134 3.866 11 C -0.120 4.120 12 C -0.110 4.110 13 C 0.128 3.872 14 H 0.065 0.935 15 N -0.679 5.679 16 C 0.498 3.502 17 O -0.549 6.549 18 C 0.516 3.484 19 O -0.540 6.540 20 N -0.688 5.688 21 C 0.148 3.852 22 C -0.181 4.181 23 C -0.182 4.182 24 C -0.155 4.155 25 C 0.178 3.822 26 H 0.248 0.752 27 H 0.020 0.980 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.417 0.583 34 H 0.418 0.582 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.048 0.952 43 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 -6.837 -15.836 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.396 4.396 8 H 0.088 0.912 9 N -0.332 5.332 10 C 0.009 3.991 11 C -0.159 4.159 12 C -0.147 4.147 13 C 0.022 3.978 14 H 0.083 0.917 15 N -0.331 5.331 16 C 0.279 3.721 17 O -0.426 6.426 18 C 0.296 3.704 19 O -0.417 6.417 20 N -0.341 5.341 21 C 0.026 3.974 22 C -0.200 4.200 23 C -0.219 4.219 24 C -0.193 4.193 25 C 0.051 3.949 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.255 0.745 34 H 0.255 0.745 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.067 0.933 43 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -6.312 -6.711 -15.809 18.297 hybrid contribution 0.204 1.308 0.345 1.368 sum -6.108 -5.403 -15.464 17.482 Atomic orbital electron populations 1.70176 1.06742 1.25762 1.55088 1.25804 0.96014 1.01638 1.01076 0.85394 0.77708 0.79352 0.78388 1.20819 1.22073 1.19417 1.19488 0.93133 0.86115 1.40883 0.91206 1.44232 1.35931 1.02809 1.50243 1.21201 0.97656 0.85575 0.94681 1.21896 0.96789 1.00261 0.96966 1.21679 0.99340 0.93698 1.00032 1.21759 0.86357 0.98611 0.91060 0.91673 1.45783 1.25995 1.30286 1.31065 1.20411 0.86777 0.82579 0.82353 1.90779 1.46091 1.34541 1.71219 1.19929 0.85947 0.82755 0.81807 1.90722 1.45402 1.35067 1.70549 1.45801 1.26425 1.30305 1.31561 1.21148 0.86545 0.99052 0.90629 1.22411 0.96975 0.99481 1.01125 1.23182 1.00526 0.96201 1.01991 1.23060 0.99805 1.01850 0.94567 1.20786 0.88241 0.97529 0.88386 0.94339 0.96164 0.92374 0.88328 0.92558 0.90866 0.89408 0.74529 0.74479 0.90021 0.91171 0.86386 0.88686 0.87885 0.87044 0.87724 0.93347 0.98326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 11.19 21.65 0.24 -57.28 16 2 C -0.05 -2.89 4.91 84.86 0.42 -2.48 16 3 Si 0.96 46.83 29.59 68.60 2.03 48.86 16 4 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.27 -15.09 9.59 84.03 0.81 -14.29 16 8 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 9 N -0.61 -31.21 2.99 -699.11 -2.09 -33.30 16 10 C 0.13 5.37 6.51 86.36 0.56 5.93 16 11 C -0.12 -3.67 6.08 30.67 0.19 -3.48 16 12 C -0.11 -3.26 5.35 30.62 0.16 -3.09 16 13 C 0.13 4.97 2.60 45.07 0.12 5.08 16 14 H 0.07 2.84 7.58 -2.39 -0.02 2.82 16 15 N -0.68 -23.40 5.07 -443.50 -2.25 -25.65 16 16 C 0.50 18.12 7.86 87.27 0.69 18.81 16 17 O -0.55 -23.55 16.14 -3.24 -0.05 -23.60 16 18 C 0.52 15.91 7.89 87.27 0.69 16.60 16 19 O -0.54 -17.75 16.48 -3.24 -0.05 -17.80 16 20 N -0.69 -16.90 5.55 -464.41 -2.58 -19.47 16 21 C 0.15 2.82 5.96 86.38 0.51 3.34 16 22 C -0.18 -2.63 5.85 -10.79 -0.06 -2.69 16 23 C -0.18 -2.44 10.18 30.59 0.31 -2.13 16 24 C -0.16 -1.71 10.25 30.59 0.31 -1.40 16 25 C 0.18 8.92 4.89 86.36 0.42 9.34 16 26 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 2.27 7.94 -2.38 -0.02 2.25 16 29 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.42 12.28 8.08 -92.71 -0.75 11.53 16 34 H 0.42 9.80 7.87 -92.70 -0.73 9.07 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.41 7.87 -2.39 -0.02 1.39 16 37 H 0.12 1.61 8.04 -2.39 -0.02 1.60 16 38 H 0.09 1.33 8.03 -2.39 -0.02 1.31 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.05 2.88 6.04 -2.39 -0.01 2.87 16 43 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -72.42 355.30 -0.08 -72.50 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -0.45 Total: 26.20 kcal Atomic # 6 Polarization: 24.42 SS G_CDS: 5.12 Total: 29.55 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -6.68 Total: -135.71 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.11 Total: -41.40 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -72.42 -0.08 -72.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692104472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.858 kcal (2) G-P(sol) polarization free energy of solvation -72.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds