Wall clock time and date at job start Tue Mar 31 2020 04:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00161 * 2 1 4 4 H 1.48504 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47081 * 300.00191 * 3 2 1 6 6 H 1.48507 * 109.46841 * 60.00105 * 3 2 1 7 7 C 1.38812 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00649 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99535 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99868 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47304 * 180.02562 * 10 9 7 12 12 C 1.30997 * 120.00044 * 127.00312 * 11 10 9 13 13 C 1.50706 * 120.00059 * 7.56456 * 12 11 10 14 14 N 1.46500 * 109.46803 * 127.15199 * 13 12 11 15 15 C 1.34780 * 119.99698 * 180.02562 * 14 13 12 16 16 O 1.21284 * 120.00066 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00219 * 179.72569 * 15 14 13 18 18 H 1.09003 * 110.01788 * 300.98132 * 17 15 14 19 19 C 1.53875 * 110.03055 * 62.36422 * 17 15 14 20 20 C 1.54267 * 106.59769 * 119.28795 * 19 17 15 21 21 C 1.54892 * 104.19406 * 23.60982 * 20 19 17 22 22 H 1.08999 * 110.75599 * 80.56055 * 21 20 19 23 23 C 1.50704 * 110.75634 * 203.74185 * 21 20 19 24 24 N 1.34776 * 120.00181 * 298.54806 * 23 21 20 25 25 O 1.21281 * 119.99964 * 118.54511 * 23 21 20 26 26 C 1.54262 * 110.03685 * 179.58535 * 17 15 14 27 27 H 0.97005 * 119.99586 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00078 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47366 * 60.00765 * 10 9 7 30 30 H 1.08999 * 109.47314 * 300.00411 * 10 9 7 31 31 H 1.08001 * 120.00067 * 307.01177 * 11 10 9 32 32 H 1.07997 * 120.00155 * 187.56148 * 12 11 10 33 33 H 1.09000 * 109.46900 * 7.15592 * 13 12 11 34 34 H 1.08997 * 109.47441 * 247.15370 * 13 12 11 35 35 H 0.96998 * 120.00764 * 359.97438 * 14 13 12 36 36 H 1.09004 * 110.03382 * 238.57093 * 19 17 15 37 37 H 1.08998 * 110.03356 * 359.95352 * 19 17 15 38 38 H 1.08996 * 110.48958 * 142.29069 * 20 19 17 39 39 H 1.09005 * 110.48664 * 264.93442 * 20 19 17 40 40 H 0.97003 * 119.99851 * 0.02562 * 24 23 21 41 41 H 0.97004 * 120.00222 * 179.97438 * 24 23 21 42 42 H 1.09000 * 110.48517 * 335.78320 * 26 17 15 43 43 H 1.09000 * 110.49083 * 98.42509 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0017 11 6 1.0787 -4.8022 -0.0021 12 6 1.1717 -5.7431 -0.9087 13 6 2.3533 -5.7746 -1.8436 14 7 2.9749 -7.1005 -1.8003 15 6 4.0568 -7.3627 -2.5602 16 8 4.5160 -6.5008 -3.2794 17 6 4.7000 -8.7246 -2.5111 18 1 5.0236 -8.9480 -1.4945 19 6 3.7058 -9.7948 -2.9948 20 6 4.3410 -10.4583 -4.2342 21 6 5.8597 -10.2065 -4.0634 22 1 6.2952 -10.9267 -3.3708 23 6 6.5627 -10.2574 -5.3955 24 7 6.5443 -11.3909 -6.1243 25 8 7.1451 -9.2783 -5.8116 26 6 5.9055 -8.7747 -3.4724 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.6852 -3.7150 0.8879 30 1 2.6840 -3.7141 -0.8921 31 1 0.3001 -4.8473 0.7451 32 1 0.4016 -6.4963 -0.9863 33 1 3.0799 -5.0225 -1.5362 34 1 2.0189 -5.5631 -2.8592 35 1 2.6084 -7.7896 -1.2243 36 1 3.5476 -10.5380 -2.2133 37 1 2.7578 -9.3291 -3.2643 38 1 4.1304 -11.5276 -4.2446 39 1 3.9767 -9.9879 -5.1476 40 1 6.0782 -12.1738 -5.7917 41 1 6.9965 -11.4235 -6.9819 42 1 5.7943 -8.0323 -4.2626 43 1 6.8355 -8.6160 -2.9266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754173147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:42 Heat of formation + Delta-G solvation = -58.255165 kcal Electronic energy + Delta-G solvation = -22836.045694 eV Core-core repulsion = 19302.200300 eV Total energy + Delta-G solvation = -3533.845395 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65763 -39.52299 -37.18969 -36.37537 -34.49766 -34.02553 -32.84233 -30.62276 -29.85744 -29.15738 -26.53044 -24.89730 -23.01810 -22.47165 -21.98117 -20.19135 -19.89649 -18.70760 -17.93980 -17.29895 -16.90619 -16.57772 -16.34920 -16.12823 -15.39203 -14.90692 -14.55601 -14.47252 -13.98484 -13.84170 -13.59630 -13.41197 -13.19402 -12.63409 -12.55971 -12.40035 -12.00682 -11.78766 -11.55887 -11.50926 -11.19971 -11.04941 -10.94388 -10.79367 -10.40680 -10.20041 -10.05894 -9.99022 -9.83217 -9.75097 -9.14238 -9.00678 -8.58342 -6.90593 -5.75648 -3.04717 2.26634 2.30840 2.65285 3.09928 3.40542 3.46081 3.52033 3.54449 4.02632 4.05195 4.37329 4.63212 4.76327 4.78407 4.85580 5.00952 5.06866 5.08992 5.14902 5.26663 5.30494 5.39704 5.52801 5.57761 5.70750 5.72782 5.86292 5.91606 5.98633 6.17258 6.26997 6.37197 6.41148 6.55597 6.60465 6.88293 6.93610 7.15515 7.52805 7.72687 7.92228 8.25827 8.42895 9.54388 10.10132 10.45468 11.47210 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026641 B = 0.002320 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.744510 B =12064.417399 C =12842.476015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.728 5.728 10 C 0.161 3.839 11 C -0.109 4.109 12 C -0.199 4.199 13 C 0.139 3.861 14 N -0.724 5.724 15 C 0.512 3.488 16 O -0.532 6.532 17 C -0.115 4.115 18 H 0.102 0.898 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.117 4.117 22 H 0.105 0.895 23 C 0.523 3.477 24 N -0.858 5.858 25 O -0.534 6.534 26 C -0.092 4.092 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.398 0.602 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.400 0.600 41 H 0.400 0.600 42 H 0.101 0.899 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.511 -31.133 -6.203 32.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.372 5.372 10 C 0.035 3.965 11 C -0.129 4.129 12 C -0.218 4.218 13 C 0.017 3.983 14 N -0.375 5.375 15 C 0.298 3.702 16 O -0.408 6.408 17 C -0.136 4.136 18 H 0.120 0.880 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.139 4.139 22 H 0.123 0.877 23 C 0.307 3.693 24 N -0.422 5.422 25 O -0.410 6.410 26 C -0.130 4.130 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.228 0.772 41 H 0.231 0.769 42 H 0.119 0.881 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.313 -29.607 -6.832 31.501 hybrid contribution -0.304 0.097 0.191 0.371 sum 8.010 -29.510 -6.641 31.290 Atomic orbital electron populations 1.69678 1.05135 1.25589 1.57781 1.24765 0.95581 0.97782 1.02924 0.86086 0.78859 0.83907 0.77180 1.20450 1.21776 1.21843 1.19300 0.91145 0.83966 1.42644 0.90986 1.42277 1.05900 0.99525 1.89507 1.20015 0.92997 0.84758 0.98777 1.23295 0.99058 0.94758 0.95763 1.22587 0.98838 1.02090 0.98332 1.20566 0.94050 0.84171 0.99483 1.46036 1.30839 1.15234 1.45416 1.20513 0.80204 0.89760 0.79723 1.90746 1.62475 1.47765 1.39819 1.21972 0.96766 0.92759 1.02121 0.88002 1.22136 0.98358 0.97069 0.97725 1.22344 0.92499 1.00985 0.99179 1.22344 0.96495 1.00655 0.94394 0.87662 1.20559 0.79671 0.82531 0.86508 1.43905 1.58777 1.15011 1.24503 1.90793 1.43570 1.34908 1.71695 1.22199 0.96569 0.95095 0.99170 0.93540 0.78177 0.95431 0.94624 0.86921 0.87117 0.89338 0.91169 0.76836 0.90352 0.90707 0.90593 0.90812 0.77175 0.76940 0.88079 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.73 -19.01 5.59 -61.09 -0.34 -19.35 16 10 C 0.16 3.33 6.35 -5.19 -0.03 3.30 16 11 C -0.11 -1.77 9.63 -36.02 -0.35 -2.12 16 12 C -0.20 -2.68 9.63 -36.02 -0.35 -3.03 16 13 C 0.14 2.00 5.76 -5.19 -0.03 1.97 16 14 N -0.72 -8.09 5.42 -61.47 -0.33 -8.42 16 15 C 0.51 6.49 6.92 -10.99 -0.08 6.42 16 16 O -0.53 -9.48 15.41 5.55 0.09 -9.39 16 17 C -0.11 -0.95 3.29 -90.66 -0.30 -1.25 16 18 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 19 C -0.11 -0.64 6.39 -25.61 -0.16 -0.80 16 20 C -0.11 -0.58 6.22 -25.07 -0.16 -0.73 16 21 C -0.12 -0.77 3.29 -89.74 -0.30 -1.07 16 22 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 23 C 0.52 4.59 7.42 -10.98 -0.08 4.51 16 24 N -0.86 -3.85 8.82 31.22 0.28 -3.58 16 25 O -0.53 -7.57 16.63 5.56 0.09 -7.48 16 26 C -0.09 -0.92 5.19 -25.04 -0.13 -1.05 16 27 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.38 10.47 7.66 -40.82 -0.31 10.16 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.76 5.29 -51.93 -0.27 0.48 16 31 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.09 1.50 5.30 -51.93 -0.28 1.22 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 3.12 8.45 -40.82 -0.35 2.78 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.48 7.61 -51.93 -0.40 0.08 16 38 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 40 H 0.40 0.48 8.82 -40.82 -0.36 0.12 16 41 H 0.40 1.60 8.93 -40.82 -0.36 1.23 16 42 H 0.10 1.42 6.27 -51.93 -0.33 1.10 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -37.86 357.00 -7.77 -45.63 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.42 Total: 8.73 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.20 Total: -1.45 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.32 Total: -59.40 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.18 Total: -16.87 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.86 -7.77 -45.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754173147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.626 kcal (2) G-P(sol) polarization free energy of solvation -37.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds