Wall clock time and date at job start Tue Mar 31 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47365 * 83.54073 * 3 2 1 5 5 N 1.46497 * 109.47177 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00063 * 269.99891 * 5 4 3 7 7 C 1.50698 * 109.47288 * 270.00216 * 6 5 4 8 8 H 1.08001 * 120.00088 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00528 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99329 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00548 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.46900 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47186 * 119.99735 * 11 9 7 14 14 H 1.48496 * 109.47410 * 239.99958 * 11 9 7 15 15 C 1.34773 * 120.00016 * 90.00191 * 5 4 3 16 16 O 1.21286 * 120.00116 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00217 * 359.97438 * 15 5 4 18 18 N 1.46900 * 109.47266 * 180.02562 * 17 15 5 19 19 C 1.44086 * 110.95701 * 304.15323 * 18 17 15 20 20 C 1.54621 * 112.40171 * 217.23736 * 19 18 17 21 21 C 1.54570 * 110.90175 * 319.60613 * 20 19 18 22 22 O 1.39908 * 113.22641 * 319.28778 * 21 20 19 23 23 C 1.44516 * 112.80898 * 94.90115 * 22 21 20 24 24 C 1.46264 * 111.30878 * 280.44738 * 23 22 21 25 25 H 1.09001 * 109.47015 * 323.53843 * 3 2 1 26 26 H 1.08997 * 109.46551 * 203.54159 * 3 2 1 27 27 H 1.08998 * 109.47294 * 59.99389 * 4 3 2 28 28 H 1.09006 * 109.47172 * 299.99677 * 4 3 2 29 29 H 1.09000 * 109.47174 * 29.99746 * 6 5 4 30 30 H 1.08998 * 109.47172 * 149.99869 * 6 5 4 31 31 H 0.97011 * 119.99578 * 180.02562 * 10 9 7 32 32 H 1.08997 * 109.47100 * 60.00049 * 17 15 5 33 33 H 1.09006 * 109.47104 * 299.99962 * 17 15 5 34 34 H 1.09005 * 108.92695 * 96.48224 * 19 18 17 35 35 H 1.09004 * 108.91598 * 337.98525 * 19 18 17 36 36 H 1.09005 * 109.19208 * 199.23838 * 20 19 18 37 37 H 1.09001 * 109.15366 * 79.94944 * 20 19 18 38 38 H 1.09002 * 108.73195 * 198.32431 * 21 20 19 39 39 H 1.09001 * 108.73529 * 80.25859 * 21 20 19 40 40 H 1.08992 * 109.11631 * 159.97195 * 23 22 21 41 41 H 1.09002 * 109.11071 * 40.91470 * 23 22 21 42 42 H 1.09002 * 108.91614 * 180.21609 * 24 23 22 43 43 H 1.08997 * 108.91280 * 298.85479 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.1614 -1.4333 5 7 4.5831 -0.1601 -1.4333 6 6 5.3145 1.1012 -1.5762 7 6 5.5654 1.3736 -3.0370 8 1 5.2154 0.6768 -3.7842 9 6 6.2417 2.5125 -3.4197 10 7 6.6674 3.3614 -2.5098 11 14 6.5533 2.8499 -5.2303 12 1 5.9772 1.7502 -6.0450 13 1 5.9141 4.1349 -5.6116 14 1 8.0158 2.9332 -5.4739 15 6 5.2580 -1.3193 -1.3019 16 8 6.4709 -1.3182 -1.3014 17 6 4.5057 -2.6167 -1.1543 18 7 5.4613 -3.7252 -1.0281 19 6 6.3703 -3.7518 -2.1457 20 6 6.7162 -5.1919 -2.5898 21 6 6.9163 -6.1136 -1.3653 22 8 7.6187 -5.5005 -0.3221 23 6 6.7478 -4.9152 0.6716 24 6 6.2313 -3.6203 0.2292 25 1 2.9717 -0.8257 0.6107 26 1 2.9708 0.9430 0.4105 27 1 2.7544 0.6649 -2.0440 28 1 2.7553 -1.1038 -1.8437 29 1 4.7247 1.9134 -1.1513 30 1 6.2670 1.0304 -1.0510 31 1 7.1430 4.1629 -2.7791 32 1 3.8788 -2.7750 -2.0318 33 1 3.8793 -2.5742 -0.2632 34 1 7.2902 -3.2385 -1.8654 35 1 5.9154 -3.2238 -2.9838 36 1 7.6331 -5.1746 -3.1790 37 1 5.9038 -5.5819 -3.2030 38 1 7.4637 -7.0016 -1.6813 39 1 5.9383 -6.4215 -0.9953 40 1 7.3046 -4.7794 1.5987 41 1 5.9112 -5.5895 0.8546 42 1 5.5846 -3.2135 1.0067 43 1 7.0687 -2.9399 0.0749 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363377712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:45 Heat of formation + Delta-G solvation = -38.095738 kcal Electronic energy + Delta-G solvation = -24725.106382 eV Core-core repulsion = 21192.135166 eV Total energy + Delta-G solvation = -3532.971216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27592 -38.76849 -37.00304 -36.02903 -35.02849 -32.94400 -32.58532 -30.90012 -30.07289 -27.70696 -26.30598 -25.11170 -24.05938 -22.68044 -21.58768 -20.40143 -18.58319 -17.68139 -16.87125 -16.69746 -16.48311 -16.12012 -15.67832 -15.47298 -14.90293 -14.75310 -14.47148 -14.28145 -13.85785 -13.57813 -13.34502 -13.09203 -12.79932 -12.51195 -12.46255 -12.33877 -11.99136 -11.81649 -11.63225 -11.41458 -11.30922 -11.03738 -10.91454 -10.85773 -10.72883 -10.64054 -10.27184 -10.21653 -9.77063 -9.66915 -9.50512 -8.52313 -8.01039 -7.90789 -6.13748 -4.18480 2.68638 2.77471 3.17918 3.24559 3.33108 3.36147 3.59287 3.92691 3.93348 4.15623 4.37618 4.88406 4.97588 5.04077 5.08366 5.12492 5.17055 5.22342 5.28042 5.31198 5.36923 5.40432 5.50032 5.55642 5.66819 5.74083 5.78066 6.00323 6.02231 6.07421 6.12024 6.22580 6.42785 6.82322 7.02684 7.15362 7.29765 7.33032 7.37257 7.53679 7.82072 8.12004 8.18418 8.76333 8.90928 9.47437 10.94404 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.005308 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.214139 B = 5274.133495 C = 7138.717474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.217 3.783 3 C -0.049 4.049 4 C 0.117 3.883 5 N -0.595 5.595 6 C 0.244 3.756 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.474 3.526 16 O -0.530 6.530 17 C 0.031 3.969 18 N -0.509 5.509 19 C 0.053 3.947 20 C -0.141 4.141 21 C 0.071 3.929 22 O -0.375 6.375 23 C 0.069 3.931 24 C 0.008 3.992 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 -14.601 5.531 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.102 4.102 3 C -0.091 4.091 4 C -0.010 4.010 5 N -0.327 5.327 6 C 0.125 3.875 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.260 3.740 16 O -0.407 6.407 17 C -0.101 4.101 18 N -0.232 5.232 19 C -0.075 4.075 20 C -0.180 4.180 21 C -0.007 4.007 22 O -0.294 6.294 23 C -0.008 4.008 24 C -0.120 4.120 25 H 0.123 0.877 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.169 -14.861 5.568 16.691 hybrid contribution 0.652 1.276 -1.143 1.833 sum -4.517 -13.585 4.425 14.984 Atomic orbital electron populations 1.81214 1.13038 1.09304 1.08589 1.29083 0.95080 0.92847 0.93142 1.19880 0.81392 1.06382 1.01423 1.21312 0.82225 1.04009 0.93430 1.48342 1.04838 1.09292 1.70224 1.19340 0.92578 0.78223 0.97370 1.21420 1.36753 1.06348 0.92122 0.92440 1.24917 0.95279 0.95960 0.97811 1.69932 1.38332 1.11978 1.32954 0.86467 0.78134 0.78049 0.84931 1.19820 1.20944 1.20862 1.21615 0.88794 0.86019 0.77592 1.90684 1.13733 1.86293 1.49988 1.22545 0.95765 0.87660 1.04112 1.62030 1.17910 1.40163 1.03052 1.21939 0.97121 0.95495 0.92972 1.22720 1.01087 0.96209 0.97970 1.22129 0.96367 0.94140 0.88067 1.87745 1.33144 1.74256 1.34219 1.21692 0.93669 0.94214 0.91211 1.21853 0.98904 0.98798 0.92399 0.87664 0.86539 0.88756 0.90566 0.94850 0.93683 0.92703 0.88091 0.88458 0.91184 0.92160 0.91649 0.91587 0.91298 0.92997 0.89153 0.92715 0.90845 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.33 18.54 42.15 0.78 -5.55 16 2 C 0.22 2.49 15.43 -20.76 -0.32 2.17 16 3 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 4 C 0.12 1.46 5.17 -4.05 -0.02 1.44 16 5 N -0.59 -10.33 2.46 -175.07 -0.43 -10.76 16 6 C 0.24 5.63 5.16 -5.19 -0.03 5.60 16 7 C -0.53 -13.86 9.39 -34.44 -0.32 -14.19 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 11 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.47 8.15 6.91 -10.99 -0.08 8.07 16 16 O -0.53 -11.41 11.88 5.55 0.07 -11.34 16 17 C 0.03 0.38 4.14 -4.98 -0.02 0.36 16 18 N -0.51 -6.68 4.48 -240.54 -1.08 -7.76 16 19 C 0.05 0.80 3.95 -4.47 -0.02 0.78 16 20 C -0.14 -1.73 6.52 -25.05 -0.16 -1.89 16 21 C 0.07 0.81 6.20 37.98 0.24 1.05 16 22 O -0.38 -5.04 10.39 -32.69 -0.34 -5.38 16 23 C 0.07 0.77 6.38 33.96 0.22 0.98 16 24 C 0.01 0.10 4.49 -6.53 -0.03 0.07 16 25 H 0.11 0.80 7.22 -51.93 -0.37 0.42 16 26 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 28 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 29 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 30 H 0.05 1.20 7.42 -51.93 -0.39 0.81 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.10 1.14 7.38 -51.93 -0.38 0.75 16 33 H 0.10 0.93 6.94 -51.93 -0.36 0.57 16 34 H 0.07 1.28 5.92 -51.93 -0.31 0.97 16 35 H 0.06 0.96 7.35 -51.93 -0.38 0.58 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.55 7.25 -51.93 -0.38 0.18 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.53 7.46 -51.93 -0.39 0.15 16 42 H 0.07 0.81 7.69 -51.93 -0.40 0.41 16 43 H 0.07 1.20 5.90 -51.93 -0.31 0.89 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -32.33 347.06 -7.37 -39.70 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.49 Total: -1.07 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.82 Total: 5.41 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.01 Total: -48.64 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.27 Total: -16.72 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.33 -7.37 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363377712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.603 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds