Wall clock time and date at job start Tue Mar 31 2020 03:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47365 * 83.54073 * 3 2 1 5 5 N 1.46497 * 109.47177 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00063 * 269.99891 * 5 4 3 7 7 C 1.50698 * 109.47288 * 270.00216 * 6 5 4 8 8 H 1.08001 * 120.00088 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00528 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99329 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00548 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.46900 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47186 * 119.99735 * 11 9 7 14 14 H 1.48496 * 109.47410 * 239.99958 * 11 9 7 15 15 C 1.34773 * 120.00016 * 90.00191 * 5 4 3 16 16 O 1.21286 * 120.00116 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00217 * 359.97438 * 15 5 4 18 18 N 1.46900 * 109.47266 * 180.02562 * 17 15 5 19 19 C 1.44086 * 110.95701 * 304.15323 * 18 17 15 20 20 C 1.54621 * 112.40171 * 217.23736 * 19 18 17 21 21 C 1.54570 * 110.90175 * 319.60613 * 20 19 18 22 22 O 1.39908 * 113.22641 * 319.28778 * 21 20 19 23 23 C 1.44516 * 112.80898 * 94.90115 * 22 21 20 24 24 C 1.46264 * 111.30878 * 280.44738 * 23 22 21 25 25 H 1.09001 * 109.47015 * 323.53843 * 3 2 1 26 26 H 1.08997 * 109.46551 * 203.54159 * 3 2 1 27 27 H 1.08998 * 109.47294 * 59.99389 * 4 3 2 28 28 H 1.09006 * 109.47172 * 299.99677 * 4 3 2 29 29 H 1.09000 * 109.47174 * 29.99746 * 6 5 4 30 30 H 1.08998 * 109.47172 * 149.99869 * 6 5 4 31 31 H 0.97011 * 119.99578 * 180.02562 * 10 9 7 32 32 H 1.08997 * 109.47100 * 60.00049 * 17 15 5 33 33 H 1.09006 * 109.47104 * 299.99962 * 17 15 5 34 34 H 1.09005 * 108.92695 * 96.48224 * 19 18 17 35 35 H 1.09004 * 108.91598 * 337.98525 * 19 18 17 36 36 H 1.09005 * 109.19208 * 199.23838 * 20 19 18 37 37 H 1.09001 * 109.15366 * 79.94944 * 20 19 18 38 38 H 1.09002 * 108.73195 * 198.32431 * 21 20 19 39 39 H 1.09001 * 108.73529 * 80.25859 * 21 20 19 40 40 H 1.08992 * 109.11631 * 159.97195 * 23 22 21 41 41 H 1.09002 * 109.11071 * 40.91470 * 23 22 21 42 42 H 1.09002 * 108.91614 * 180.21609 * 24 23 22 43 43 H 1.08997 * 108.91280 * 298.85479 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.1614 -1.4333 5 7 4.5831 -0.1601 -1.4333 6 6 5.3145 1.1012 -1.5762 7 6 5.5654 1.3736 -3.0370 8 1 5.2154 0.6768 -3.7842 9 6 6.2417 2.5125 -3.4197 10 7 6.6674 3.3614 -2.5098 11 14 6.5533 2.8499 -5.2303 12 1 5.9772 1.7502 -6.0450 13 1 5.9141 4.1349 -5.6116 14 1 8.0158 2.9332 -5.4739 15 6 5.2580 -1.3193 -1.3019 16 8 6.4709 -1.3182 -1.3014 17 6 4.5057 -2.6167 -1.1543 18 7 5.4613 -3.7252 -1.0281 19 6 6.3703 -3.7518 -2.1457 20 6 6.7162 -5.1919 -2.5898 21 6 6.9163 -6.1136 -1.3653 22 8 7.6187 -5.5005 -0.3221 23 6 6.7478 -4.9152 0.6716 24 6 6.2313 -3.6203 0.2292 25 1 2.9717 -0.8257 0.6107 26 1 2.9708 0.9430 0.4105 27 1 2.7544 0.6649 -2.0440 28 1 2.7553 -1.1038 -1.8437 29 1 4.7247 1.9134 -1.1513 30 1 6.2670 1.0304 -1.0510 31 1 7.1430 4.1629 -2.7791 32 1 3.8788 -2.7750 -2.0318 33 1 3.8793 -2.5742 -0.2632 34 1 7.2902 -3.2385 -1.8654 35 1 5.9154 -3.2238 -2.9838 36 1 7.6331 -5.1746 -3.1790 37 1 5.9038 -5.5819 -3.2030 38 1 7.4637 -7.0016 -1.6813 39 1 5.9383 -6.4215 -0.9953 40 1 7.3046 -4.7794 1.5987 41 1 5.9112 -5.5895 0.8546 42 1 5.5846 -3.2135 1.0067 43 1 7.0687 -2.9399 0.0749 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363377712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:44 Heat of formation + Delta-G solvation = -61.118142 kcal Electronic energy + Delta-G solvation = -24726.104709 eV Core-core repulsion = 21192.135166 eV Total energy + Delta-G solvation = -3533.969543 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47832 -39.89185 -38.06503 -37.16901 -36.33143 -34.87935 -33.56107 -32.15677 -31.19548 -29.26736 -27.50170 -26.28211 -25.30283 -24.25797 -22.56201 -21.52785 -19.88803 -18.83344 -18.34995 -18.05495 -17.73015 -17.15264 -16.86947 -16.68266 -16.24589 -15.87440 -15.75847 -15.62729 -14.91078 -14.75689 -14.47542 -14.40702 -14.02336 -13.84169 -13.62390 -13.52587 -13.23287 -13.06554 -12.91470 -12.76146 -12.61136 -12.56207 -12.40332 -12.19586 -11.95990 -11.81162 -11.70835 -11.58711 -11.22465 -11.05386 -10.61849 -10.45565 -9.45947 -9.23160 -8.20747 -6.32863 1.35961 1.38744 1.48688 1.69552 1.86422 1.89221 2.30375 2.43643 2.88602 3.07756 3.09917 3.16739 3.80572 3.96735 4.09008 4.12235 4.15572 4.21496 4.31042 4.39590 4.49706 4.50810 4.62973 4.63149 4.75181 4.85098 4.86497 4.98788 5.06254 5.08071 5.12617 5.13522 5.20118 5.27152 5.33039 5.59894 5.85441 5.95022 6.02484 6.11247 6.46116 6.62834 6.73954 6.81729 7.32750 7.52170 8.85905 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.005308 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.214139 B = 5274.133495 C = 7138.717474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.246 3.754 3 C -0.036 4.036 4 C 0.113 3.887 5 N -0.597 5.597 6 C 0.261 3.739 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.956 3.044 12 H -0.268 1.268 13 H -0.273 1.273 14 H -0.286 1.286 15 C 0.468 3.532 16 O -0.582 6.582 17 C 0.038 3.962 18 N -0.496 5.496 19 C 0.061 3.939 20 C -0.138 4.138 21 C 0.069 3.931 22 O -0.401 6.401 23 C 0.066 3.934 24 C 0.011 3.989 25 H 0.140 0.860 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.031 0.969 30 H 0.001 0.999 31 H 0.265 0.735 32 H 0.123 0.877 33 H 0.141 0.859 34 H 0.026 0.974 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.049 -16.643 5.717 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.071 4.071 3 C -0.077 4.077 4 C -0.012 4.012 5 N -0.328 5.328 6 C 0.139 3.861 7 C -0.575 4.575 8 H 0.069 0.931 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.781 3.219 12 H -0.193 1.193 13 H -0.198 1.198 14 H -0.212 1.212 15 C 0.256 3.744 16 O -0.462 6.462 17 C -0.093 4.093 18 N -0.217 5.217 19 C -0.068 4.068 20 C -0.177 4.177 21 C -0.009 4.009 22 O -0.320 6.320 23 C -0.010 4.010 24 C -0.117 4.117 25 H 0.157 0.843 26 H 0.135 0.865 27 H 0.098 0.902 28 H 0.127 0.873 29 H 0.049 0.951 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.140 0.860 33 H 0.158 0.842 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.100 -16.924 5.757 19.235 hybrid contribution 1.274 1.920 -1.189 2.593 sum -5.826 -15.004 4.568 16.731 Atomic orbital electron populations 1.81261 1.14458 1.11025 1.10031 1.29140 0.94928 0.91325 0.91718 1.19818 0.80053 1.07934 0.99921 1.21528 0.79014 1.05322 0.95342 1.48226 1.06764 1.07538 1.70232 1.18745 0.91375 0.80933 0.95047 1.21757 1.36194 1.05951 0.93616 0.93060 1.25713 0.95302 0.96072 1.01734 1.70034 1.39299 1.12516 1.34775 0.85538 0.77661 0.78312 0.80340 1.19266 1.19793 1.21208 1.22616 0.88461 0.87240 0.76078 1.90692 1.16377 1.87078 1.52023 1.22779 0.95403 0.84088 1.07078 1.62172 1.17360 1.39656 1.02548 1.21800 0.95366 0.96682 0.92963 1.22718 1.01497 0.94679 0.98788 1.22243 0.97301 0.94067 0.87259 1.87726 1.34668 1.74538 1.35081 1.21835 0.94420 0.93621 0.91115 1.21876 0.97952 0.99050 0.92775 0.84269 0.86486 0.90153 0.87275 0.95068 0.98134 0.92625 0.85957 0.84176 0.95603 0.93844 0.92358 0.89580 0.89761 0.91499 0.87856 0.90237 0.88449 0.95183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.98 18.54 20.01 0.37 -12.61 16 2 C 0.25 4.98 15.43 89.44 1.38 6.36 16 3 C -0.04 -0.59 6.03 28.79 0.17 -0.41 16 4 C 0.11 2.55 5.17 86.38 0.45 2.99 16 5 N -0.60 -20.35 2.46 -826.17 -2.03 -22.38 16 6 C 0.26 12.39 5.16 85.63 0.44 12.83 16 7 C -0.54 -28.80 9.39 25.60 0.24 -28.56 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.01 0.60 5.46 84.65 0.46 1.06 16 10 N -0.93 -53.81 13.29 21.45 0.28 -53.53 16 11 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 14 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 15 C 0.47 15.83 6.91 87.66 0.61 16.43 16 16 O -0.58 -26.12 11.88 -3.05 -0.04 -26.16 16 17 C 0.04 0.82 4.14 85.56 0.35 1.17 16 18 N -0.50 -11.96 4.48 -914.94 -4.10 -16.06 16 19 C 0.06 1.82 3.95 87.38 0.35 2.17 16 20 C -0.14 -3.22 6.52 31.68 0.21 -3.01 16 21 C 0.07 1.43 6.20 72.52 0.45 1.88 16 22 O -0.40 -10.30 10.39 -139.87 -1.45 -11.76 16 23 C 0.07 1.34 6.38 69.91 0.45 1.78 16 24 C 0.01 0.27 4.49 84.05 0.38 0.65 16 25 H 0.14 1.41 7.22 -2.39 -0.02 1.39 16 26 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 28 H 0.11 1.79 6.44 -2.38 -0.02 1.77 16 29 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 30 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 31 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 32 H 0.12 2.23 7.38 -2.39 -0.02 2.21 16 33 H 0.14 1.88 6.94 -2.38 -0.02 1.87 16 34 H 0.03 1.00 5.92 -2.38 -0.01 0.98 16 35 H 0.04 1.40 7.35 -2.38 -0.02 1.38 16 36 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.18 7.25 -2.39 -0.02 1.17 16 40 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.08 1.24 7.46 -2.39 -0.02 1.22 16 42 H 0.10 1.84 7.69 -2.39 -0.02 1.83 16 43 H 0.03 1.01 5.90 -2.39 -0.01 1.00 16 Total: -1.00 -75.13 347.06 2.00 -73.13 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.01 Total: 8.20 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 5.93 Total: 15.34 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -5.47 Total: -104.58 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.49 Total: -37.92 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -75.13 2.00 -73.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363377712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.014 kcal (2) G-P(sol) polarization free energy of solvation -75.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds