Wall clock time and date at job start Tue Mar 31 2020 03:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.60397 * 2 1 4 4 O 1.21282 * 119.99804 * 234.39639 * 3 2 1 5 5 N 1.34775 * 120.00252 * 54.39201 * 3 2 1 6 6 C 1.46960 * 120.59498 * 185.10807 * 5 3 2 7 7 C 1.53370 * 108.63567 * 235.24636 * 6 5 3 8 8 N 1.46964 * 108.63352 * 310.57594 * 7 6 5 9 9 C 1.36933 * 120.59492 * 235.20151 * 8 7 6 10 10 H 1.07993 * 120.00630 * 152.16495 * 9 8 7 11 11 C 1.38815 * 119.99871 * 332.43474 * 9 8 7 12 12 N 1.31624 * 120.00127 * 163.72060 * 11 9 8 13 13 Si 1.86806 * 120.00223 * 343.71882 * 11 9 8 14 14 H 1.48505 * 109.46719 * 95.38515 * 13 11 9 15 15 H 1.48492 * 109.46973 * 215.38315 * 13 11 9 16 16 H 1.48498 * 109.46823 * 335.38599 * 13 11 9 17 17 C 1.46963 * 118.81056 * 55.48122 * 8 7 6 18 18 C 1.46964 * 120.59262 * 5.12755 * 5 3 2 19 19 C 1.53349 * 109.60431 * 120.32371 * 2 1 3 20 20 C 1.53027 * 108.43776 * 52.53205 * 19 2 1 21 21 C 1.50173 * 110.00438 * 48.66456 * 20 19 2 22 22 O 1.21283 * 118.24769 * 162.55331 * 21 20 19 23 23 N 1.33356 * 123.50304 * 342.52830 * 21 20 19 24 24 C 1.45749 * 124.10876 * 2.20375 * 23 21 20 25 25 H 1.08994 * 109.47168 * 67.57949 * 1 2 3 26 26 H 1.09002 * 109.47222 * 187.58085 * 1 2 3 27 27 H 1.09006 * 109.47166 * 307.57869 * 1 2 3 28 28 H 1.09007 * 109.60670 * 115.50149 * 6 5 3 29 29 H 1.08996 * 109.61365 * 354.99210 * 6 5 3 30 30 H 1.09001 * 109.61214 * 190.83317 * 7 6 5 31 31 H 1.09002 * 109.75170 * 70.40841 * 7 6 5 32 32 H 0.96990 * 120.00203 * 180.02562 * 12 11 9 33 33 H 1.08995 * 109.61146 * 64.26253 * 17 8 7 34 34 H 1.09001 * 109.60659 * 184.77426 * 17 8 7 35 35 H 1.08993 * 109.61307 * 244.49914 * 18 5 3 36 36 H 1.09001 * 109.60808 * 5.00938 * 18 5 3 37 37 H 1.08997 * 109.67504 * 172.12443 * 19 2 1 38 38 H 1.09004 * 109.67160 * 292.65344 * 19 2 1 39 39 H 1.09000 * 109.25587 * 288.55683 * 20 19 2 40 40 H 1.09009 * 109.36779 * 168.84427 * 20 19 2 41 41 H 0.97005 * 117.94140 * 182.22279 * 23 21 20 42 42 H 1.09005 * 109.29743 * 220.63094 * 24 23 21 43 43 H 1.09008 * 109.13384 * 101.15206 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4196 0.0000 4 8 2.8151 1.7857 -0.8540 5 7 1.6215 2.2825 0.9489 6 6 2.0171 3.6969 0.8977 7 6 2.6924 4.0653 2.2246 8 7 1.8376 3.6084 3.3293 9 6 1.4176 4.4849 4.2939 10 1 0.4879 4.3099 4.8148 11 6 2.1841 5.6015 4.5983 12 7 1.6539 6.5997 5.2728 13 14 3.9681 5.6873 4.0510 14 1 4.0565 6.4262 2.7658 15 1 4.7692 6.3924 5.0834 16 1 4.4965 4.3116 3.8684 17 6 1.4466 2.1928 3.3835 18 6 0.7666 1.8257 2.0536 19 6 2.0445 -0.7294 1.2470 20 6 1.3750 -2.1037 1.3145 21 6 1.4768 -2.7908 -0.0169 22 8 1.2943 -3.9891 -0.0599 23 7 1.7567 -2.1537 -1.1545 24 6 2.0430 -0.7274 -1.2434 25 1 -0.3633 0.3919 -0.9499 26 1 -0.3634 -1.0187 0.1356 27 1 -0.3634 0.6268 0.8145 28 1 1.1338 4.3188 0.7518 29 1 2.7163 3.8518 0.0761 30 1 2.8190 5.1463 2.2830 31 1 3.6658 3.5790 2.2900 32 1 2.1894 7.3801 5.4851 33 1 2.3322 1.5740 3.5278 34 1 0.7502 2.0370 4.2075 35 1 -0.2056 2.3142 1.9900 36 1 0.6401 0.7446 1.9952 37 1 3.1253 -0.8531 1.1799 38 1 1.7952 -0.1532 2.1381 39 1 0.3247 -1.9794 1.5784 40 1 1.8696 -2.7099 2.0736 41 1 1.7704 -2.6722 -1.9743 42 1 1.5559 -0.3166 -2.1278 43 1 3.1204 -0.5837 -1.3260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408259230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:22 Heat of formation + Delta-G solvation = -17.878204 kcal Electronic energy + Delta-G solvation = -25600.711649 eV Core-core repulsion = 22068.617131 eV Total energy + Delta-G solvation = -3532.094518 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46757 -39.68075 -37.42887 -36.74410 -34.55271 -33.47087 -31.59119 -31.24404 -30.56393 -27.45006 -27.22761 -25.13306 -24.02176 -23.42232 -22.43355 -21.09194 -19.66815 -18.30697 -17.62157 -16.98861 -16.48139 -16.26107 -15.94647 -15.64945 -15.14265 -15.08615 -14.64263 -14.49169 -14.26262 -13.99905 -13.67438 -13.49692 -12.91768 -12.68660 -12.60702 -12.53407 -12.34972 -12.03200 -11.99348 -11.76182 -11.37642 -11.18995 -11.05807 -10.87953 -10.49667 -10.26559 -10.08618 -9.95298 -9.64397 -9.51303 -9.28862 -8.97328 -8.44724 -7.08650 -6.05596 -3.47058 2.41855 2.60949 2.88151 3.20606 3.23694 3.40107 3.41765 4.09286 4.23946 4.33342 4.40142 4.40225 4.69084 4.73765 4.85797 5.02257 5.15010 5.22354 5.25616 5.31226 5.38951 5.44158 5.45143 5.53829 5.58177 5.64718 5.70817 5.81680 5.87649 5.92831 6.00700 6.08417 6.27091 6.37334 6.50148 6.56761 6.72530 7.06137 7.56187 7.79228 7.96910 8.19796 8.20729 8.76962 9.57202 9.91916 11.09880 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.029749 B = 0.004316 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.984970 B = 6485.410012 C = 6813.015677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.093 4.093 3 C 0.526 3.474 4 O -0.550 6.550 5 N -0.591 5.591 6 C 0.095 3.905 7 C 0.112 3.888 8 N -0.605 5.605 9 C -0.266 4.266 10 H 0.089 0.911 11 C 0.025 3.975 12 N -0.909 5.909 13 Si 0.886 3.114 14 H -0.288 1.288 15 H -0.302 1.302 16 H -0.268 1.268 17 C 0.133 3.867 18 C 0.065 3.935 19 C -0.129 4.129 20 C -0.135 4.135 21 C 0.520 3.480 22 O -0.562 6.562 23 N -0.717 5.717 24 C 0.134 3.866 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.029 0.971 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.401 0.599 42 H 0.083 0.917 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 -13.910 -10.507 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.096 4.096 3 C 0.313 3.687 4 O -0.428 6.428 5 N -0.323 5.323 6 C -0.029 4.029 7 C -0.014 4.014 8 N -0.329 5.329 9 C -0.394 4.394 10 H 0.106 0.894 11 C -0.174 4.174 12 N -0.551 5.551 13 Si 0.717 3.283 14 H -0.216 1.216 15 H -0.231 1.231 16 H -0.193 1.193 17 C 0.006 3.994 18 C -0.059 4.059 19 C -0.166 4.166 20 C -0.174 4.174 21 C 0.307 3.693 22 O -0.441 6.441 23 N -0.368 5.368 24 C 0.009 3.991 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.236 0.764 42 H 0.102 0.898 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.647 -14.001 -10.640 17.662 hybrid contribution 1.021 0.271 -0.567 1.199 sum -0.626 -13.729 -11.207 17.734 Atomic orbital electron populations 1.22366 0.91838 1.03547 1.04297 1.20948 0.98103 0.93404 0.97186 1.20038 0.80949 0.86400 0.81343 1.90674 1.35096 1.78544 1.38514 1.47905 1.49859 1.09700 1.24805 1.22275 1.00609 0.79939 1.00064 1.21789 0.93333 0.99558 0.86727 1.44268 1.59149 1.04090 1.25361 1.18929 1.03873 1.02522 1.14100 0.89367 1.25288 0.97852 0.96689 0.97603 1.69775 1.36195 1.06563 1.42580 0.86943 0.86847 0.77910 0.76573 1.21597 1.23088 1.19312 1.21434 0.97485 0.86202 0.94270 1.23118 0.94484 1.00056 0.88209 1.22083 1.01539 0.95219 0.97756 1.21692 1.04283 0.96492 0.94950 1.20195 0.75407 0.87251 0.86402 1.90762 1.50978 1.15204 1.87196 1.45454 1.71255 1.10076 1.10033 1.21199 1.01730 0.78984 0.97148 0.91627 0.91283 0.89585 0.91012 0.89605 0.90155 0.94709 0.92586 0.95281 0.90344 0.90796 0.88409 0.90233 0.88064 0.87532 0.87555 0.76373 0.89834 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 7.66 37.16 0.28 -1.10 16 2 C -0.09 -0.93 0.49 -155.52 -0.08 -1.01 16 3 C 0.53 7.33 6.49 -10.99 -0.07 7.26 16 4 O -0.55 -9.31 15.20 5.56 0.08 -9.23 16 5 N -0.59 -8.75 2.94 -172.22 -0.51 -9.25 16 6 C 0.09 1.63 6.60 -3.60 -0.02 1.61 16 7 C 0.11 2.30 4.30 -3.60 -0.02 2.28 16 8 N -0.60 -13.05 2.76 -171.77 -0.47 -13.52 16 9 C -0.27 -6.91 10.07 -15.06 -0.15 -7.06 16 10 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 11 C 0.03 0.69 5.32 -17.43 -0.09 0.59 16 12 N -0.91 -26.75 13.97 55.49 0.78 -25.98 16 13 Si 0.89 21.52 24.31 -169.99 -4.13 17.38 16 14 H -0.29 -6.78 6.75 56.52 0.38 -6.40 16 15 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 16 H -0.27 -6.37 6.07 56.52 0.34 -6.03 16 17 C 0.13 2.19 6.51 -3.37 -0.02 2.17 16 18 C 0.07 0.84 4.06 -3.37 -0.01 0.83 16 19 C -0.13 -1.17 4.58 -26.54 -0.12 -1.30 16 20 C -0.13 -1.14 5.38 -28.12 -0.15 -1.29 16 21 C 0.52 5.68 6.99 -11.87 -0.08 5.59 16 22 O -0.56 -8.32 17.78 5.55 0.10 -8.22 16 23 N -0.72 -6.51 5.36 -61.39 -0.33 -6.84 16 24 C 0.13 1.25 5.33 -4.49 -0.02 1.23 16 25 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.07 0.53 5.52 -51.93 -0.29 0.24 16 27 H 0.09 0.72 4.49 -51.93 -0.23 0.49 16 28 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.09 1.46 6.99 -51.93 -0.36 1.10 16 30 H 0.08 1.80 4.14 -51.93 -0.21 1.59 16 31 H 0.04 0.74 6.87 -51.93 -0.36 0.38 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.03 0.47 7.87 -51.93 -0.41 0.06 16 34 H 0.08 1.24 7.93 -51.93 -0.41 0.83 16 35 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 36 H 0.10 0.95 2.76 -51.93 -0.14 0.80 16 37 H 0.08 0.78 8.13 -51.93 -0.42 0.35 16 38 H 0.10 0.92 4.61 -51.93 -0.24 0.68 16 39 H 0.11 0.74 6.79 -51.93 -0.35 0.39 16 40 H 0.11 0.84 8.14 -51.92 -0.42 0.41 16 41 H 0.40 3.19 8.80 -40.82 -0.36 2.83 16 42 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 43 H 0.08 0.83 7.70 -51.92 -0.40 0.43 16 LS Contribution 315.46 15.07 4.75 4.75 Total: -1.00 -32.97 315.46 -6.22 -39.19 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.93 Total: 1.89 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -0.56 Total: 9.81 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.53 Total: -55.59 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.18 Total: -17.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.13 Total: 17.38 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.97 -6.22 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408259230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.316 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds