Wall clock time and date at job start Tue Mar 31 2020 03:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99546 * 2 1 4 4 H 1.48503 * 109.47027 * 239.99942 * 3 2 1 5 5 H 1.48494 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46775 * 120.00378 * 3 2 1 7 7 C 1.37874 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00055 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.53117 * 109.52064 * 180.02562 * 9 7 2 11 11 C 1.53031 * 109.27975 * 182.44034 * 10 9 7 12 12 N 1.46842 * 109.52719 * 59.17435 * 11 10 9 13 13 C 1.46895 * 111.00456 * 174.16305 * 12 11 10 14 14 C 1.50699 * 109.47332 * 293.62906 * 13 12 11 15 15 O 1.21286 * 119.99734 * 353.80044 * 14 13 12 16 16 N 1.34774 * 120.00539 * 173.80259 * 14 13 12 17 17 C 1.47262 * 121.35576 * 180.02562 * 16 14 13 18 18 C 1.52989 * 108.19039 * 118.47465 * 17 16 14 19 19 N 1.45646 * 110.77314 * 46.72241 * 18 17 16 20 20 C 1.33379 * 124.59033 * 338.10328 * 19 18 17 21 21 O 1.21283 * 118.49145 * 184.33950 * 20 19 18 22 22 C 1.47048 * 121.34964 * 359.97438 * 16 14 13 23 23 C 1.46851 * 111.19994 * 298.26432 * 12 11 10 24 24 C 1.53038 * 109.52294 * 61.73531 * 23 12 11 25 25 H 0.97002 * 119.99984 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.57240 * 300.15373 * 9 7 2 27 27 H 1.08998 * 109.50447 * 62.49600 * 10 9 7 28 28 H 1.09004 * 109.53544 * 302.39578 * 10 9 7 29 29 H 1.09008 * 109.45975 * 299.16128 * 11 10 9 30 30 H 1.09006 * 109.45769 * 179.19198 * 11 10 9 31 31 H 1.08999 * 109.47705 * 173.62509 * 13 12 11 32 32 H 1.09000 * 109.46955 * 53.62453 * 13 12 11 33 33 H 1.09008 * 109.71926 * 238.14936 * 17 16 14 34 34 H 1.08999 * 109.72366 * 358.75526 * 17 16 14 35 35 H 1.08998 * 109.21237 * 286.39660 * 18 17 16 36 36 H 1.08997 * 109.21804 * 167.05684 * 18 17 16 37 37 H 0.96998 * 117.70534 * 158.38475 * 19 18 17 38 38 H 1.09003 * 109.56525 * 102.93925 * 22 16 14 39 39 H 1.09002 * 109.66826 * 342.64264 * 22 16 14 40 40 H 1.08997 * 109.46526 * 181.75496 * 23 12 11 41 41 H 1.08999 * 109.45864 * 301.72658 * 23 12 11 42 42 H 1.08994 * 109.50249 * 180.87959 * 24 23 12 43 43 H 1.09008 * 109.53394 * 60.78540 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2451 -3.6638 -0.0015 11 6 1.4755 -4.9850 -0.0641 12 7 0.6555 -5.0180 -1.2819 13 6 0.0095 -6.3270 -1.4462 14 6 1.0598 -7.3772 -1.7010 15 8 2.2182 -7.0518 -1.8537 16 7 0.7120 -8.6780 -1.7594 17 6 1.7139 -9.7287 -2.0061 18 6 1.7379 -10.6601 -0.7927 19 7 0.3853 -11.0261 -0.3956 20 6 -0.7086 -10.3257 -0.6987 21 8 -1.7726 -10.6886 -0.2436 22 6 -0.6831 -9.1058 -1.5781 23 6 -0.3383 -3.9369 -1.2824 24 6 0.3773 -2.5844 -1.2561 25 1 -0.4850 0.8401 0.0004 26 1 0.6214 -2.5580 0.8860 27 1 2.8416 -3.6330 0.9103 28 1 2.9011 -3.5833 -0.8683 29 1 0.8305 -5.0714 0.8104 30 1 2.1809 -5.8158 -0.0786 31 1 -0.6788 -6.2892 -2.2906 32 1 -0.5414 -6.5767 -0.5394 33 1 1.4425 -10.2936 -2.8980 34 1 2.6960 -9.2759 -2.1424 35 1 2.2312 -10.1548 0.0377 36 1 2.2946 -11.5628 -1.0442 37 1 0.2724 -11.8339 0.1294 38 1 -1.1202 -9.3457 -2.5475 39 1 -1.2543 -8.3051 -1.1083 40 1 -0.9503 -4.0066 -2.1817 41 1 -0.9747 -4.0282 -0.4022 42 1 -0.3607 -1.7825 -1.2408 43 1 1.0033 -2.4859 -2.1431 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542878223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:26 Heat of formation + Delta-G solvation = -82.517719 kcal Electronic energy + Delta-G solvation = -24402.379902 eV Core-core repulsion = 20867.482404 eV Total energy + Delta-G solvation = -3534.897498 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.78710 -40.53279 -39.27034 -37.43699 -35.68947 -35.31911 -33.31377 -31.50429 -31.21155 -29.39825 -28.09398 -26.58863 -24.64762 -23.81438 -23.12223 -21.53488 -20.38105 -19.95737 -18.64502 -18.42175 -18.11942 -17.46981 -17.02135 -16.76574 -16.40063 -16.29092 -15.92568 -15.48146 -15.33905 -14.90231 -14.67008 -14.47804 -14.24932 -13.96960 -13.92407 -13.45406 -13.15712 -13.00673 -12.94323 -12.82362 -12.59887 -12.54920 -12.26304 -12.03210 -11.87288 -11.59830 -11.37168 -10.99157 -10.67203 -10.62881 -10.35368 -10.21114 -9.78750 -9.18520 -8.06854 -6.19650 1.41848 1.42078 1.43472 1.51104 1.54610 1.64217 2.25720 2.45056 2.98997 3.19814 3.38380 3.45343 3.79271 4.01745 4.16977 4.19780 4.21946 4.28179 4.38185 4.38617 4.49660 4.50184 4.59823 4.74280 4.76446 4.88929 4.91773 4.94269 5.12180 5.18325 5.25425 5.34170 5.55647 5.63028 5.72957 5.96155 6.01056 6.06346 6.17903 6.28509 6.30192 6.43073 6.90220 7.04374 7.12560 7.47477 8.97584 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.035646 B = 0.003089 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.319776 B = 9063.705127 C = 9404.248302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.046 0.954 9 C 0.045 3.955 10 C -0.096 4.096 11 C 0.071 3.929 12 N -0.532 5.532 13 C 0.031 3.969 14 C 0.525 3.475 15 O -0.547 6.547 16 N -0.620 5.620 17 C 0.091 3.909 18 C 0.099 3.901 19 N -0.708 5.708 20 C 0.511 3.489 21 O -0.592 6.592 22 C 0.097 3.903 23 C 0.070 3.930 24 C -0.096 4.096 25 H 0.261 0.739 26 H -0.008 1.008 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.022 0.978 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.128 0.872 37 H 0.407 0.593 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.025 0.975 42 H 0.066 0.934 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 -24.050 -4.770 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.134 4.134 11 C -0.057 4.057 12 N -0.258 5.258 13 C -0.099 4.099 14 C 0.313 3.687 15 O -0.424 6.424 16 N -0.357 5.357 17 C -0.031 4.031 18 C -0.025 4.025 19 N -0.359 5.359 20 C 0.298 3.702 21 O -0.472 6.472 22 C -0.028 4.028 23 C -0.057 4.057 24 C -0.134 4.134 25 H 0.070 0.930 26 H 0.010 0.990 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.093 0.907 31 H 0.149 0.851 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.244 0.756 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.104 0.896 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.207 -23.633 -5.153 24.189 hybrid contribution -0.088 0.764 1.092 1.335 sum -0.295 -22.869 -4.061 23.229 Atomic orbital electron populations 1.69989 1.06966 1.27144 1.51377 1.25703 0.95742 1.02162 0.94801 0.85706 0.78496 0.79316 0.78695 1.19861 1.20674 1.19857 1.21546 0.92883 0.92419 1.50605 0.93522 1.18657 0.93101 0.92230 0.93363 1.21489 0.98078 0.94237 0.99615 1.22013 0.96015 0.98383 0.89270 1.61584 1.23450 1.01971 1.38764 1.22164 0.95224 0.88331 1.04201 1.20740 0.89675 0.82882 0.75369 1.90713 1.21398 1.80803 1.49445 1.48238 1.08957 1.05892 1.72585 1.22135 0.94529 0.88166 0.98287 1.21905 0.82179 1.01103 0.97344 1.45396 1.06946 1.28267 1.55273 1.20533 0.83497 0.85352 0.80857 1.90811 1.30877 1.70645 1.54907 1.22046 0.83451 0.95477 1.01853 1.22104 0.92556 0.90879 1.00174 1.21418 0.99205 0.94942 0.97832 0.92995 0.99002 0.93361 0.93794 0.96012 0.90665 0.85091 0.90726 0.87889 0.87891 0.91679 0.85448 0.75644 0.84793 0.85572 0.89629 0.95666 0.91521 0.95370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.30 11.38 21.45 0.24 -53.05 16 2 C 0.01 0.82 5.31 84.65 0.45 1.27 16 3 Si 0.95 44.65 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.84 8.56 25.60 0.22 -30.62 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.04 2.35 2.16 -11.46 -0.02 2.33 16 10 C -0.10 -4.37 5.32 30.64 0.16 -4.20 16 11 C 0.07 2.68 5.12 86.32 0.44 3.13 16 12 N -0.53 -18.59 4.35 -900.94 -3.92 -22.50 16 13 C 0.03 0.76 4.09 85.56 0.35 1.11 16 14 C 0.52 12.84 7.25 87.66 0.64 13.47 16 15 O -0.55 -18.11 14.19 -3.05 -0.04 -18.16 16 16 N -0.62 -9.99 2.98 -823.34 -2.45 -12.45 16 17 C 0.09 1.01 6.53 86.23 0.56 1.57 16 18 C 0.10 0.76 7.34 86.54 0.63 1.39 16 19 N -0.71 -8.02 5.42 -467.14 -2.53 -10.55 16 20 C 0.51 8.56 7.84 87.78 0.69 9.25 16 21 O -0.59 -14.93 17.80 -3.04 -0.05 -14.99 16 22 C 0.10 1.24 6.40 85.44 0.55 1.79 16 23 C 0.07 2.61 5.46 86.33 0.47 3.08 16 24 C -0.10 -4.62 5.12 30.64 0.16 -4.47 16 25 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 26 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.08 2.77 6.05 -2.38 -0.01 2.76 16 31 H 0.13 2.44 7.98 -2.39 -0.02 2.42 16 32 H 0.08 1.59 7.21 -2.39 -0.02 1.57 16 33 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.10 1.48 7.06 -2.39 -0.02 1.47 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.41 3.78 8.80 -92.71 -0.82 2.97 16 38 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.13 1.56 6.10 -2.39 -0.01 1.54 16 40 H 0.09 2.71 8.01 -2.39 -0.02 2.70 16 41 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 3.57 6.18 -2.39 -0.01 3.56 16 43 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -75.88 338.33 -1.23 -77.11 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.20 Total: 8.81 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 5.30 Total: -0.90 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -8.66 Total: -98.55 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.10 Total: -33.14 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -75.88 -1.23 -77.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542878223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.407 kcal (2) G-P(sol) polarization free energy of solvation -75.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds