Wall clock time and date at job start Tue Mar 31 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99548 * 2 1 4 4 H 1.48497 * 109.47427 * 269.99660 * 3 2 1 5 5 H 1.48493 * 109.47204 * 30.00291 * 3 2 1 6 6 H 1.48507 * 109.46724 * 150.00169 * 3 2 1 7 7 C 1.37875 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99716 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00008 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47346 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00362 * 169.99695 * 10 9 7 12 12 C 1.53238 * 109.34285 * 187.25181 * 11 10 9 13 13 N 1.47086 * 108.51990 * 306.17250 * 12 11 10 14 14 C 1.34774 * 120.87871 * 231.18557 * 13 12 11 15 15 O 1.21281 * 120.00284 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99712 * 180.02562 * 14 13 12 17 17 H 1.08993 * 109.13347 * 40.51714 * 16 14 13 18 18 C 1.52740 * 109.39630 * 281.21792 * 16 14 13 19 19 C 1.53347 * 108.82173 * 189.17531 * 18 16 14 20 20 C 1.53069 * 108.42246 * 67.36992 * 19 18 16 21 21 C 1.50171 * 109.89437 * 311.10217 * 20 19 18 22 22 O 1.21289 * 118.24912 * 197.60437 * 21 20 19 23 23 N 1.33358 * 123.50923 * 17.57702 * 21 20 19 24 24 C 1.47080 * 118.23599 * 51.45464 * 13 12 11 25 25 C 1.46903 * 110.99572 * 294.29961 * 10 9 7 26 26 H 0.96994 * 119.99897 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47419 * 60.00033 * 9 7 2 28 28 H 1.09004 * 109.46929 * 300.00008 * 9 7 2 29 29 H 1.09004 * 109.49233 * 67.29207 * 11 10 9 30 30 H 1.08999 * 109.49640 * 307.21463 * 11 10 9 31 31 H 1.09003 * 109.62872 * 186.46514 * 12 11 10 32 32 H 1.09005 * 109.62687 * 65.87859 * 12 11 10 33 33 H 1.09007 * 109.66459 * 69.29772 * 18 16 14 34 34 H 1.08996 * 109.53630 * 308.98042 * 18 16 14 35 35 H 1.09005 * 109.67579 * 307.64369 * 19 18 16 36 36 H 1.08997 * 109.70847 * 187.12086 * 19 18 16 37 37 H 1.09001 * 109.40157 * 190.97040 * 20 19 18 38 38 H 1.09005 * 109.33033 * 71.18747 * 20 19 18 39 39 H 0.97001 * 117.94627 * 177.77459 * 23 21 20 40 40 H 1.08998 * 109.62594 * 68.25367 * 24 13 12 41 41 H 1.09003 * 109.62324 * 188.83292 * 24 13 12 42 42 H 1.08995 * 109.49334 * 292.70249 * 25 10 9 43 43 H 1.09002 * 109.49368 * 52.78933 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5215 -4.8935 0.2377 12 6 2.5641 -6.0031 0.4104 13 7 3.4619 -5.9861 -0.7545 14 6 3.7122 -7.1122 -1.4514 15 8 3.1941 -8.1578 -1.1208 16 6 4.6358 -7.0722 -2.6415 17 1 5.4842 -6.4269 -2.4137 18 6 3.8866 -6.5061 -3.8462 19 6 4.7558 -6.6830 -5.0971 20 6 4.8706 -8.1793 -5.3988 21 6 5.2463 -8.9249 -4.1505 22 8 5.6917 -10.0473 -4.2644 23 7 5.1168 -8.4188 -2.9235 24 6 4.0839 -4.7088 -1.1350 25 6 2.9768 -3.6490 -1.2505 26 1 -0.4850 0.8400 -0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6249 -2.5570 0.8897 29 1 0.8798 -5.1264 -0.6122 30 1 0.9163 -4.8191 1.1412 31 1 2.0635 -6.9694 0.4728 32 1 3.1398 -5.8264 1.3190 33 1 3.6848 -5.4467 -3.6880 34 1 2.9464 -7.0421 -3.9755 35 1 5.7475 -6.2680 -4.9167 36 1 4.2927 -6.1729 -5.9417 37 1 5.6353 -8.3378 -6.1592 38 1 3.9128 -8.5478 -5.7662 39 1 5.3538 -8.9837 -2.1715 40 1 4.8029 -4.4101 -0.3722 41 1 4.5887 -4.8190 -2.0949 42 1 2.3150 -3.8992 -2.0796 43 1 3.4273 -2.6721 -1.4262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602206176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:36 Heat of formation + Delta-G solvation = -89.647235 kcal Electronic energy + Delta-G solvation = -24553.586270 eV Core-core repulsion = 21018.379613 eV Total energy + Delta-G solvation = -3535.206657 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02132 -40.67810 -39.02870 -37.38204 -36.03182 -34.40914 -33.98995 -32.45686 -30.91755 -29.89044 -27.49845 -26.03084 -24.65635 -23.87078 -23.73151 -22.19789 -20.27308 -20.05772 -18.50458 -18.45626 -18.40038 -17.47454 -16.79944 -16.57438 -16.20698 -16.09580 -15.97363 -15.58894 -15.32140 -15.12473 -14.89337 -14.66315 -14.57312 -14.11568 -13.99945 -13.48433 -13.07758 -13.01721 -12.77324 -12.60671 -12.58613 -12.39135 -12.30777 -12.10008 -12.01292 -11.89413 -11.74708 -11.28348 -11.25644 -10.79423 -10.59081 -10.16960 -9.81996 -9.03256 -8.17457 -6.27674 1.36077 1.45996 1.46298 1.48101 1.58862 1.80137 2.29260 2.43711 3.15590 3.19569 3.25870 3.54292 3.61113 3.79568 3.92062 4.00948 4.06192 4.15634 4.24709 4.28718 4.46851 4.49851 4.53945 4.71599 4.73103 4.80197 4.86487 4.92569 4.97701 5.05899 5.08298 5.22068 5.24631 5.27707 5.40623 5.61106 5.67032 6.05149 6.17769 6.25651 6.37958 6.58164 6.89050 6.94166 7.10272 7.42821 8.93791 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025172 B = 0.003437 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.074419 B = 8145.229234 C = 8819.643161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.261 1.261 7 C -0.518 4.518 8 H 0.073 0.927 9 C 0.208 3.792 10 N -0.539 5.539 11 C 0.044 3.956 12 C 0.126 3.874 13 N -0.601 5.601 14 C 0.502 3.498 15 O -0.578 6.578 16 C 0.130 3.870 17 H 0.135 0.865 18 C -0.133 4.133 19 C -0.111 4.111 20 C -0.133 4.133 21 C 0.519 3.481 22 O -0.608 6.608 23 N -0.699 5.699 24 C 0.112 3.888 25 C 0.047 3.953 26 H 0.263 0.737 27 H -0.039 1.039 28 H 0.001 0.999 29 H 0.016 0.984 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.397 0.603 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.022 0.978 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.592 -9.158 -9.126 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.185 1.185 7 C -0.556 4.556 8 H 0.091 0.909 9 C 0.082 3.918 10 N -0.264 5.264 11 C -0.085 4.085 12 C 0.004 3.996 13 N -0.334 5.334 14 C 0.290 3.710 15 O -0.458 6.458 16 C 0.022 3.978 17 H 0.152 0.848 18 C -0.171 4.171 19 C -0.148 4.148 20 C -0.173 4.173 21 C 0.308 3.692 22 O -0.490 6.490 23 N -0.349 5.349 24 C -0.010 4.010 25 C -0.081 4.081 26 H 0.072 0.928 27 H -0.021 1.021 28 H 0.019 0.981 29 H 0.034 0.966 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.232 0.768 40 H 0.109 0.891 41 H 0.143 0.857 42 H 0.041 0.959 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.669 -9.929 -8.813 17.675 hybrid contribution -1.106 0.472 0.236 1.226 sum 10.563 -9.457 -8.577 16.570 Atomic orbital electron populations 1.70097 1.07941 1.27851 1.51949 1.25926 0.95618 1.03300 0.94904 0.85383 0.78610 0.78187 0.78445 1.19635 1.21626 1.18486 1.21464 0.93927 0.90532 1.49727 0.90906 1.19366 0.90100 0.88953 0.93368 1.62000 1.26976 1.02288 1.35166 1.22404 0.95554 0.90112 1.00410 1.21622 0.91443 0.98196 0.88386 1.48273 1.46282 1.09114 1.29694 1.21287 0.82379 0.82961 0.84346 1.90709 1.53309 1.31606 1.70192 1.21087 0.97774 0.85105 0.93856 0.84769 1.21979 0.98879 1.03380 0.92860 1.21679 1.01659 0.93890 0.97597 1.21754 1.05355 0.96457 0.93724 1.20929 0.75984 0.86160 0.86126 1.90741 1.48530 1.22298 1.87423 1.45355 1.65238 1.15706 1.08579 1.22332 0.94824 0.80403 1.03397 1.22499 0.95584 1.00241 0.89825 0.92842 1.02127 0.98112 0.96567 0.90430 0.89580 0.89731 0.87078 0.91732 0.88781 0.87409 0.86503 0.87515 0.76756 0.89074 0.85705 0.95925 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.16 13.29 21.45 0.28 -53.88 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 41.20 29.54 68.60 2.03 43.22 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.52 -26.80 8.41 25.60 0.22 -26.59 16 8 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 9 C 0.21 10.27 4.72 85.56 0.40 10.68 16 10 N -0.54 -20.40 4.62 -898.88 -4.15 -24.56 16 11 C 0.04 1.47 5.62 86.38 0.49 1.95 16 12 C 0.13 3.44 6.60 86.35 0.57 4.01 16 13 N -0.60 -14.19 3.00 -817.03 -2.45 -16.64 16 14 C 0.50 11.99 6.87 87.66 0.60 12.60 16 15 O -0.58 -18.67 15.83 -3.03 -0.05 -18.72 16 16 C 0.13 2.08 2.63 44.30 0.12 2.20 16 17 H 0.14 1.30 6.87 -2.39 -0.02 1.29 16 18 C -0.13 -1.67 5.04 30.62 0.15 -1.52 16 19 C -0.11 -0.89 6.04 30.73 0.19 -0.71 16 20 C -0.13 -1.74 6.03 29.71 0.18 -1.56 16 21 C 0.52 11.56 7.71 87.71 0.68 12.23 16 22 O -0.61 -19.26 17.78 -3.06 -0.05 -19.32 16 23 N -0.70 -14.28 4.79 -450.52 -2.16 -16.43 16 24 C 0.11 2.23 6.11 86.50 0.53 2.76 16 25 C 0.05 1.41 5.47 86.54 0.47 1.89 16 26 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 27 H -0.04 -2.12 8.12 -2.39 -0.02 -2.14 16 28 H 0.00 0.04 7.97 -2.38 -0.02 0.02 16 29 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.08 2.60 7.99 -2.39 -0.02 2.58 16 31 H 0.09 2.42 7.06 -2.39 -0.02 2.41 16 32 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.11 1.13 6.70 -2.38 -0.02 1.12 16 34 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.09 0.50 8.13 -2.38 -0.02 0.48 16 36 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.40 9.11 8.44 -92.71 -0.78 8.33 16 40 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.13 1.42 4.58 -2.39 -0.01 1.41 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 2.89 6.67 -2.39 -0.02 2.87 16 Total: -1.00 -73.85 339.95 -1.26 -75.12 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.24 Total: 12.79 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 5.05 Total: 18.42 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -8.48 Total: -111.51 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.10 Total: -38.04 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -73.85 -1.26 -75.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.531 kcal (2) G-P(sol) polarization free energy of solvation -73.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds