Wall clock time and date at job start Tue Mar 31 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47208 * 2 1 4 4 C 1.53003 * 110.65097 * 302.91231 * 3 2 1 5 5 N 1.47312 * 110.49464 * 65.88354 * 3 2 1 6 6 C 1.34530 * 106.61756 * 118.83014 * 5 3 2 7 7 O 1.21534 * 123.76845 * 179.76862 * 6 5 3 8 8 N 1.33794 * 112.45737 * 359.75978 * 6 5 3 9 9 C 1.46495 * 124.17593 * 179.97438 * 8 6 5 10 10 C 1.53042 * 109.45892 * 60.07202 * 9 8 6 11 11 C 1.53196 * 109.30846 * 178.59885 * 10 9 8 12 12 N 1.46928 * 108.76768 * 54.65558 * 11 10 9 13 13 C 1.36933 * 120.63319 * 126.35952 * 12 11 10 14 14 H 1.08004 * 120.00144 * 207.69776 * 13 12 11 15 15 C 1.38814 * 119.99854 * 27.69095 * 13 12 11 16 16 N 1.31614 * 120.00261 * 17.36566 * 15 13 12 17 17 Si 1.86797 * 119.99832 * 197.36122 * 15 13 12 18 18 H 1.48497 * 109.47212 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47037 * 120.00354 * 17 15 13 20 20 H 1.48507 * 109.47234 * 240.00222 * 17 15 13 21 21 C 1.46923 * 118.73545 * 306.38045 * 12 11 10 22 22 C 1.53032 * 109.46195 * 300.01266 * 9 8 6 23 23 C 1.34774 * 111.64247 * 0.02562 * 8 6 5 24 24 O 1.21230 * 127.15425 * 179.97438 * 23 8 6 25 25 H 1.08997 * 109.47185 * 60.00296 * 1 2 3 26 26 H 1.09001 * 109.46857 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47417 * 299.99956 * 1 2 3 28 28 H 1.09000 * 109.47652 * 240.00155 * 2 1 3 29 29 H 1.08997 * 109.47185 * 119.99704 * 2 1 3 30 30 H 1.08995 * 109.47123 * 297.78114 * 4 3 2 31 31 H 1.08997 * 109.47096 * 57.79202 * 4 3 2 32 32 H 1.09002 * 109.46445 * 177.78272 * 4 3 2 33 33 H 0.97001 * 126.69172 * 298.54760 * 5 3 2 34 34 H 1.09001 * 109.45477 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.49780 * 298.55884 * 10 9 8 36 36 H 1.08995 * 109.49860 * 58.66071 * 10 9 8 37 37 H 1.09003 * 109.60277 * 294.86304 * 11 10 9 38 38 H 1.08999 * 109.58298 * 174.43108 * 11 10 9 39 39 H 0.96996 * 120.00648 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.59146 * 293.82257 * 21 12 11 41 41 H 1.08998 * 109.58942 * 173.39342 * 21 12 11 42 42 H 1.09001 * 109.49868 * 301.34021 * 22 9 8 43 43 H 1.09005 * 109.50034 * 61.40486 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4865 2.2106 -1.2019 5 7 1.6804 2.1168 1.2594 6 6 2.8362 2.4686 1.8512 7 8 2.9001 3.0525 2.9151 8 7 3.9075 2.1036 1.1375 9 6 5.2920 2.3592 1.5424 10 6 5.5658 1.6744 2.8834 11 6 7.0242 1.9145 3.2864 12 7 7.2834 3.3608 3.2836 13 6 7.8071 3.9778 4.3881 14 1 7.5943 5.0198 4.5764 15 6 8.6115 3.2641 5.2659 16 7 9.1511 2.1253 4.8862 17 14 8.9280 3.9200 6.9861 18 1 8.2117 5.2085 7.1642 19 1 8.4381 2.9392 7.9877 20 1 10.3856 4.1333 7.1741 21 6 6.9695 4.1323 2.0733 22 6 5.5118 3.8671 1.6837 23 6 3.5555 1.4728 -0.0002 24 8 4.2967 1.0263 -0.8493 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8387 1.7466 -2.1232 31 1 0.3970 2.1881 -1.1771 32 1 1.8294 3.2445 -1.1616 33 1 0.7848 2.2794 1.5946 34 1 5.9703 1.9623 0.7870 35 1 4.9049 2.0883 3.6449 36 1 5.3864 0.6035 2.7883 37 1 7.6862 1.4233 2.5733 38 1 7.1978 1.5141 4.2852 39 1 9.7135 1.6267 5.4994 40 1 7.6270 3.8220 1.2613 41 1 7.1070 5.1952 2.2716 42 1 5.2940 4.3570 0.7347 43 1 4.8510 4.2603 2.4562 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617679591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:20 Heat of formation + Delta-G solvation = -48.504412 kcal Electronic energy + Delta-G solvation = -25343.739315 eV Core-core repulsion = 21810.316745 eV Total energy + Delta-G solvation = -3533.422570 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.69885 -39.81937 -39.38622 -37.82551 -36.53378 -34.67402 -33.30266 -31.90746 -31.35481 -30.33214 -27.49046 -26.35805 -24.72914 -24.21962 -23.97614 -22.05803 -21.44679 -20.57541 -19.04283 -18.78934 -17.70756 -17.21643 -16.99508 -16.67865 -16.56916 -15.95885 -15.57773 -15.51752 -15.20508 -15.06652 -14.91300 -14.54387 -14.28801 -14.04989 -13.63032 -13.32307 -13.13792 -13.08802 -12.94493 -12.83135 -12.63834 -12.42712 -12.24087 -12.10567 -12.03937 -11.83635 -11.74278 -11.62645 -11.46745 -10.99194 -10.76479 -10.54866 -10.41406 -8.75041 -7.90779 -5.35287 0.54059 1.15399 1.44993 1.47188 1.58058 1.94486 2.12940 2.49691 2.86828 3.25020 3.45011 3.58769 3.66720 3.73373 3.86429 4.08962 4.21282 4.30074 4.36044 4.37673 4.44789 4.56000 4.60991 4.69684 4.77017 4.83988 4.88105 4.90324 5.02842 5.03841 5.04611 5.10876 5.21958 5.27610 5.40786 5.44353 5.59655 5.64310 5.85346 6.09972 6.33526 6.36129 7.10884 7.13326 7.80373 8.32475 9.16820 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.003980 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.497096 B = 7033.740126 C = 7183.283201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.130 3.870 4 C -0.144 4.144 5 N -0.701 5.701 6 C 0.696 3.304 7 O -0.571 6.571 8 N -0.576 5.576 9 C 0.162 3.838 10 C -0.135 4.135 11 C 0.184 3.816 12 N -0.609 5.609 13 C -0.264 4.264 14 H 0.066 0.934 15 C -0.048 4.048 16 N -0.933 5.933 17 Si 0.967 3.033 18 H -0.269 1.269 19 H -0.290 1.290 20 H -0.288 1.288 21 C 0.148 3.852 22 C -0.129 4.129 23 C 0.520 3.480 24 O -0.494 6.494 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.450 0.550 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.007 0.993 38 H 0.060 0.940 39 H 0.251 0.749 40 H 0.026 0.974 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.004 -3.357 -13.839 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.040 3.960 4 C -0.202 4.202 5 N -0.367 5.367 6 C 0.397 3.603 7 O -0.447 6.447 8 N -0.320 5.320 9 C 0.061 3.939 10 C -0.174 4.174 11 C 0.058 3.942 12 N -0.333 5.333 13 C -0.394 4.394 14 H 0.083 0.917 15 C -0.243 4.243 16 N -0.579 5.579 17 Si 0.795 3.205 18 H -0.193 1.193 19 H -0.217 1.217 20 H -0.215 1.215 21 C 0.022 3.978 22 C -0.169 4.169 23 C 0.308 3.692 24 O -0.366 6.366 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.297 0.703 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.025 0.975 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.363 -3.355 -13.639 24.738 hybrid contribution 0.533 0.185 1.360 1.473 sum -19.830 -3.170 -12.279 23.538 Atomic orbital electron populations 1.21813 0.91776 1.03566 1.03333 1.21771 0.99315 0.90427 1.03925 1.21663 0.89144 0.97587 0.87598 1.22100 1.04209 0.99482 0.94422 1.45602 1.07333 1.61416 1.22344 1.16086 0.81835 0.79202 0.83189 1.91016 1.85848 1.45724 1.22078 1.46811 1.08644 1.54095 1.22478 1.21113 0.78323 0.97281 0.97184 1.22348 0.99898 0.99027 0.96174 1.20509 0.89677 0.84321 0.99713 1.44303 1.73071 1.04373 1.11515 1.19529 1.22979 0.96332 1.00591 0.91665 1.25769 0.96981 0.98451 1.03143 1.70168 1.34467 1.17767 1.35485 0.85220 0.77175 0.77944 0.80189 1.19309 1.21676 1.21485 1.20977 0.92390 0.96044 0.88433 1.22230 0.99175 0.93800 1.01649 1.21558 0.92356 0.75337 0.79947 1.90758 1.60451 1.45648 1.39706 0.89995 0.91030 0.92037 0.88764 0.92080 0.89107 0.86904 0.92082 0.70297 0.88572 0.92399 0.91931 0.97485 0.92156 0.93964 0.95618 0.91825 0.90302 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.41 71.98 0.68 -0.28 16 2 C -0.12 -1.45 5.30 30.60 0.16 -1.29 16 3 C 0.13 2.14 1.01 2.98 0.00 2.15 16 4 C -0.14 -1.52 8.62 71.98 0.62 -0.90 16 5 N -0.70 -12.96 5.62 -439.81 -2.47 -15.43 16 6 C 0.70 20.84 8.04 179.44 1.44 22.28 16 7 O -0.57 -22.08 14.91 -3.82 -0.06 -22.14 16 8 N -0.58 -17.86 2.51 -750.42 -1.88 -19.74 16 9 C 0.16 6.02 2.60 45.02 0.12 6.14 16 10 C -0.13 -5.71 5.34 30.67 0.16 -5.55 16 11 C 0.18 9.40 5.31 86.36 0.46 9.86 16 12 N -0.61 -32.23 2.99 -699.08 -2.09 -34.33 16 13 C -0.26 -15.19 9.58 84.03 0.81 -14.38 16 14 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 15 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 16 N -0.93 -56.36 11.19 21.65 0.24 -56.11 16 17 Si 0.97 46.38 29.59 68.60 2.03 48.41 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 C 0.15 6.44 6.52 86.36 0.56 7.00 16 22 C -0.13 -4.86 5.33 30.67 0.16 -4.69 16 23 C 0.52 13.77 6.99 87.94 0.61 14.39 16 24 O -0.49 -15.41 17.51 -2.88 -0.05 -15.46 16 25 H 0.08 0.26 6.42 -2.39 -0.02 0.25 16 26 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 27 H 0.06 0.36 7.39 -2.39 -0.02 0.35 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 0.50 6.38 -2.39 -0.02 0.49 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.45 5.66 8.39 -92.71 -0.78 4.88 16 34 H 0.10 3.60 7.64 -2.39 -0.02 3.59 16 35 H 0.06 2.70 6.75 -2.39 -0.02 2.68 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.06 3.46 6.04 -2.39 -0.01 3.45 16 39 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 2.69 7.93 -2.39 -0.02 2.67 16 42 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.06 2.60 6.75 -2.38 -0.02 2.59 16 Total: -1.00 -73.49 337.76 2.17 -71.32 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.24 Total: 11.10 kcal Atomic # 6 Polarization: 26.17 SS G_CDS: 6.21 Total: 32.38 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -6.20 Total: -125.61 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.11 Total: -37.60 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -73.49 2.17 -71.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617679591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.817 kcal (2) G-P(sol) polarization free energy of solvation -73.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds