Wall clock time and date at job start Tue Mar 31 2020 03:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35449 * 126.77908 * 2 1 4 4 C 1.41379 * 103.98950 * 180.26147 * 3 2 1 5 5 C 1.50694 * 126.80522 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47042 * 95.00010 * 5 4 3 7 7 C 1.46957 * 111.00265 * 293.80164 * 6 5 4 8 8 C 1.53048 * 109.37070 * 176.81127 * 7 6 5 9 9 N 1.46964 * 109.36345 * 58.39666 * 8 7 6 10 10 C 1.46899 * 111.00089 * 176.81456 * 9 8 7 11 11 C 1.53004 * 109.46868 * 313.80178 * 10 9 8 12 12 H 1.08999 * 109.47024 * 60.00274 * 11 10 9 13 13 O 1.42901 * 109.47230 * 299.99891 * 11 10 9 14 14 C 1.50702 * 109.47101 * 179.97438 * 11 10 9 15 15 H 1.08002 * 119.99780 * 0.02562 * 14 11 10 16 16 C 1.37867 * 120.00210 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00195 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00078 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47321 * 89.99720 * 18 16 14 20 20 H 1.48501 * 109.46969 * 210.00116 * 18 16 14 21 21 H 1.48504 * 109.47024 * 329.99518 * 18 16 14 22 22 C 1.46957 * 110.88145 * 300.68718 * 9 8 7 23 23 C 1.46962 * 111.00078 * 170.00224 * 6 5 4 24 24 N 1.30179 * 106.39170 * 0.02562 * 4 3 2 25 25 O 1.20917 * 111.60766 * 359.97438 * 24 4 3 26 26 H 1.08999 * 109.47622 * 179.70816 * 1 2 3 27 27 H 1.09003 * 109.47419 * 299.71462 * 1 2 3 28 28 H 1.09001 * 109.47113 * 59.71081 * 1 2 3 29 29 H 1.07997 * 128.00636 * 0.22311 * 3 2 1 30 30 H 1.08997 * 109.47261 * 214.99833 * 5 4 3 31 31 H 1.08997 * 109.47512 * 334.99987 * 5 4 3 32 32 H 1.09007 * 109.48605 * 296.78023 * 7 6 5 33 33 H 1.09002 * 109.48929 * 56.83763 * 7 6 5 34 34 H 1.08999 * 109.48836 * 298.43380 * 8 7 6 35 35 H 1.08991 * 109.51079 * 178.37863 * 8 7 6 36 36 H 1.08995 * 109.46882 * 73.80240 * 10 9 8 37 37 H 1.08999 * 109.47075 * 193.80483 * 10 9 8 38 38 H 0.96705 * 114.00049 * 300.00510 * 13 11 10 39 39 H 0.97004 * 120.00267 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.48285 * 299.34950 * 22 9 8 41 41 H 1.09000 * 109.48511 * 179.28763 * 22 9 8 42 42 H 1.08999 * 109.48518 * 303.15379 * 23 6 5 43 43 H 1.08991 * 109.48853 * 63.19893 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0063 5 6 4.9211 1.2999 -0.0084 6 7 5.4093 1.4393 1.3701 7 6 4.5104 2.2888 2.1638 8 6 5.0093 2.3440 3.6097 9 7 6.3817 2.8693 3.6318 10 6 6.8699 3.0086 5.0103 11 6 5.7956 3.6828 5.8660 12 1 4.8916 3.0737 5.8606 13 8 5.5024 4.9752 5.3316 14 6 6.2961 3.8252 7.2803 15 1 7.2821 3.4708 7.5425 16 6 5.4955 4.4079 8.2396 17 7 4.2951 4.8400 7.9203 18 14 6.1162 4.5851 9.9925 19 1 6.8153 5.8868 10.1409 20 1 4.9677 4.5300 10.9323 21 1 7.0591 3.4792 10.2979 22 6 7.2806 2.0198 2.8380 23 6 6.7816 1.9647 1.3922 24 7 3.4763 -0.7564 -0.0098 25 8 2.3095 -1.0737 -0.0063 26 1 -0.3634 -1.0276 -0.0052 27 1 -0.3634 0.5094 0.8925 28 1 -0.3633 0.5183 -0.8874 29 1 2.0346 2.1270 0.0033 30 1 5.6584 0.7597 -0.6021 31 1 4.7616 2.2885 -0.4390 32 1 4.4971 3.2951 1.7451 33 1 3.5033 1.8723 2.1423 34 1 4.9968 1.3414 4.0372 35 1 4.3607 2.9965 4.1939 36 1 7.0935 2.0228 5.4179 37 1 7.7738 3.6177 5.0157 38 1 6.2629 5.5720 5.3059 39 1 3.7319 5.2503 8.5951 40 1 7.2938 1.0136 3.2568 41 1 8.2877 2.4363 2.8595 42 1 7.4303 1.3118 0.8082 43 1 6.7941 2.9670 0.9644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809570781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:45 Heat of formation + Delta-G solvation = 27.674515 kcal Electronic energy + Delta-G solvation = -24166.146739 eV Core-core repulsion = 20636.027535 eV Total energy + Delta-G solvation = -3530.119204 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.98911 -39.15126 -36.57780 -34.88296 -33.79539 -33.09792 -32.07807 -30.66488 -29.34010 -27.96468 -27.30841 -25.04983 -23.61442 -23.19051 -22.93590 -20.44702 -19.99694 -19.21408 -17.74340 -17.27487 -17.10711 -15.80480 -15.31446 -14.82120 -14.71977 -14.61625 -14.42582 -14.18053 -13.97001 -13.85569 -13.54051 -13.41623 -13.29658 -12.81008 -12.54102 -12.32104 -12.25724 -11.71255 -11.21838 -11.11434 -10.99412 -10.94605 -10.87120 -10.81061 -10.56493 -10.38296 -10.16933 -10.03678 -9.40300 -8.90130 -8.55827 -8.34465 -8.06046 -7.67454 -6.01087 -4.18890 1.38248 2.10316 3.01252 3.27520 3.34499 3.37323 3.93373 4.09890 4.33945 4.36758 4.52883 4.89848 4.96525 5.03637 5.12213 5.15318 5.22808 5.26827 5.34776 5.37580 5.50816 5.58294 5.62906 5.69387 5.72460 5.82959 5.93187 5.95158 6.14165 6.14602 6.25906 6.37885 6.50635 6.53542 6.84147 6.99453 7.08537 7.58122 7.67636 7.78014 7.85300 8.20181 8.23044 8.84489 9.44399 9.60549 11.03163 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.003326 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.062613 B = 8417.003348 C = 9286.003138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.231 4.231 4 C 0.031 3.969 5 C 0.133 3.867 6 N -0.536 5.536 7 C 0.060 3.940 8 C 0.057 3.943 9 N -0.530 5.530 10 C 0.030 3.970 11 C 0.230 3.770 12 H 0.057 0.943 13 O -0.557 6.557 14 C -0.574 4.574 15 H 0.055 0.945 16 C 0.080 3.920 17 N -0.860 5.860 18 Si 0.889 3.111 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.055 3.945 23 C 0.063 3.937 24 N -0.351 5.351 25 O 0.097 5.903 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.170 0.830 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.101 0.899 36 H 0.027 0.973 37 H 0.064 0.936 38 H 0.345 0.655 39 H 0.260 0.740 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 -6.876 -17.838 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 C -0.253 4.253 4 C -0.128 4.128 5 C 0.004 3.996 6 N -0.262 5.262 7 C -0.068 4.068 8 C -0.071 4.071 9 N -0.254 5.254 10 C -0.097 4.097 11 C 0.172 3.828 12 H 0.075 0.925 13 O -0.359 6.359 14 C -0.612 4.612 15 H 0.073 0.927 16 C -0.126 4.126 17 N -0.495 5.495 18 Si 0.716 3.284 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.074 4.074 23 C -0.065 4.065 24 N -0.055 5.055 25 O 0.030 5.970 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.187 0.813 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.119 0.881 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.188 0.812 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.985 -8.097 -17.840 19.993 hybrid contribution 0.618 1.042 1.197 1.703 sum -3.367 -7.056 -16.643 18.388 Atomic orbital electron populations 1.20333 0.84104 1.04573 1.04135 1.24479 0.96368 0.86246 1.02840 1.22440 0.91493 1.01047 1.10271 1.23347 0.96817 0.89985 1.02687 1.20278 0.90713 0.97365 0.91226 1.62127 1.02884 1.51160 1.10006 1.22242 0.95678 0.94745 0.94091 1.22220 0.91417 0.98591 0.94917 1.62211 1.01552 1.47954 1.13716 1.23050 1.00711 0.99437 0.86501 1.19429 0.92273 0.82104 0.88952 0.92501 1.86527 1.38141 1.25354 1.85828 1.21652 1.02155 1.42554 0.94837 0.92713 1.25013 0.94571 0.94459 0.98573 1.70073 1.08246 1.37681 1.33532 0.86671 0.78508 0.78559 0.84623 1.20507 1.21118 1.19881 1.22137 0.96721 0.95822 0.92743 1.22132 0.88674 0.98230 0.97462 1.73834 0.96555 1.16431 1.18639 1.84839 1.11424 1.33254 1.67481 0.89987 0.89044 0.89291 0.81292 0.89279 0.92421 0.93765 0.90934 0.95082 0.88140 0.95503 0.91717 0.81186 0.93009 0.94677 0.90711 0.90765 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.45 36.01 0.38 -0.04 16 2 C -0.04 -0.36 7.49 -35.30 -0.26 -0.62 16 3 C -0.23 -2.48 10.05 -39.38 -0.40 -2.88 16 4 C 0.03 0.40 6.02 -82.10 -0.49 -0.09 16 5 C 0.13 1.60 5.55 -4.98 -0.03 1.57 16 6 N -0.54 -7.69 4.70 -235.91 -1.11 -8.79 16 7 C 0.06 0.94 5.42 -3.77 -0.02 0.92 16 8 C 0.06 1.06 4.93 -3.76 -0.02 1.04 16 9 N -0.53 -9.86 4.73 -234.47 -1.11 -10.97 16 10 C 0.03 0.64 4.88 -3.82 -0.02 0.62 16 11 C 0.23 5.79 2.12 -27.88 -0.06 5.73 16 12 H 0.06 1.57 6.26 -51.93 -0.33 1.24 16 13 O -0.56 -14.26 12.40 -35.23 -0.44 -14.70 16 14 C -0.57 -15.76 8.76 -34.44 -0.30 -16.06 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 17 N -0.86 -25.29 12.84 55.43 0.71 -24.58 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.05 0.85 5.58 -3.77 -0.02 0.83 16 23 C 0.06 0.84 5.61 -3.76 -0.02 0.82 16 24 N -0.35 -5.06 12.07 33.42 0.40 -4.65 16 25 O 0.10 1.23 11.20 17.17 0.19 1.43 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.09 0.99 8.03 -51.93 -0.42 0.58 16 31 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.07 1.10 6.41 -51.93 -0.33 0.76 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 2.15 5.83 -51.93 -0.30 1.84 16 36 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.34 8.03 9.04 45.56 0.41 8.44 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -32.05 348.28 -8.48 -40.53 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.00 Total: 6.36 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.36 Total: -6.02 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -1.10 Total: -49.00 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.24 Total: -13.27 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.05 -8.48 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809570781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.202 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds