Wall clock time and date at job start Tue Mar 31 2020 03:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.69812 * 2 1 4 4 O 1.21284 * 119.99983 * 236.67131 * 3 2 1 5 5 N 1.34778 * 120.00222 * 56.67650 * 3 2 1 6 6 C 1.46968 * 120.59377 * 3.90428 * 5 3 2 7 7 C 1.53811 * 108.39927 * 124.75517 * 6 5 3 8 8 N 1.46964 * 108.57742 * 49.64111 * 7 6 5 9 9 C 1.36937 * 120.59631 * 124.62503 * 8 7 6 10 10 H 1.07992 * 119.99795 * 208.57978 * 9 8 7 11 11 C 1.38818 * 119.99744 * 28.57627 * 9 8 7 12 12 N 1.31614 * 120.00249 * 14.48522 * 11 9 8 13 13 Si 1.86795 * 119.99542 * 194.48205 * 11 9 8 14 14 H 1.48499 * 109.47657 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46997 * 120.00366 * 13 11 9 16 16 H 1.48507 * 109.47213 * 239.99893 * 13 11 9 17 17 C 1.46964 * 118.80901 * 304.64229 * 8 7 6 18 18 C 1.46958 * 120.59537 * 184.17891 * 5 3 2 19 19 C 1.53342 * 109.67268 * 239.48166 * 2 1 3 20 20 C 1.52937 * 108.65833 * 172.72124 * 19 2 1 21 21 N 1.45748 * 110.47918 * 50.78924 * 20 19 2 22 22 C 1.33358 * 124.10466 * 340.87936 * 21 20 19 23 23 O 1.21282 * 118.24250 * 182.27620 * 22 21 20 24 24 C 1.50171 * 123.51062 * 2.24958 * 22 21 20 25 25 H 1.08999 * 109.47573 * 292.46744 * 1 2 3 26 26 H 1.09007 * 109.47280 * 52.46502 * 1 2 3 27 27 H 1.09003 * 109.47148 * 172.46667 * 1 2 3 28 28 H 1.08995 * 109.60975 * 244.54151 * 6 5 3 29 29 H 1.09006 * 109.60898 * 5.05266 * 6 5 3 30 30 H 1.08999 * 109.74508 * 289.84631 * 7 6 5 31 31 H 1.09001 * 109.52945 * 169.30622 * 7 6 5 32 32 H 0.96990 * 120.00356 * 179.97438 * 12 11 9 33 33 H 1.08999 * 109.61107 * 295.47933 * 17 8 7 34 34 H 1.08997 * 109.60968 * 174.97380 * 17 8 7 35 35 H 1.08996 * 109.60941 * 354.95194 * 18 5 3 36 36 H 1.09007 * 109.60849 * 115.28700 * 18 5 3 37 37 H 1.08997 * 109.60374 * 292.49344 * 19 2 1 38 38 H 1.08998 * 109.60324 * 52.98441 * 19 2 1 39 39 H 1.08993 * 109.31951 * 290.46200 * 20 19 2 40 40 H 1.09007 * 109.12383 * 170.98133 * 20 19 2 41 41 H 0.97006 * 117.94886 * 160.91143 * 21 20 19 42 42 H 1.08995 * 109.40145 * 222.28705 * 24 22 21 43 43 H 1.09005 * 109.39819 * 102.54311 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0379 1.4188 0.0000 4 8 2.7857 1.7952 -0.8776 5 7 1.6614 2.2694 0.9753 6 6 0.8254 1.8051 2.0912 7 6 1.5451 2.1392 3.4089 8 7 1.9581 3.5491 3.3723 9 6 1.5748 4.4136 4.3627 10 1 1.4589 5.4653 4.1465 11 6 1.3352 3.9380 5.6447 12 7 1.7418 2.7338 5.9866 13 14 0.4357 5.0071 6.8845 14 1 0.0866 6.3067 6.2565 15 1 -0.8059 4.3200 7.3220 16 1 1.3108 5.2444 8.0606 17 6 2.7895 4.0148 2.2535 18 6 2.0745 3.6793 0.9388 19 6 2.0462 -0.7332 -1.2439 20 6 3.5643 -0.5633 -1.3172 21 7 4.1794 -0.9198 -0.0448 22 6 3.5209 -0.9793 1.1133 23 8 4.1474 -1.2471 2.1167 24 6 2.0453 -0.7319 1.2417 25 1 -0.3634 0.3927 0.9496 26 1 -0.3634 0.6261 -0.8150 27 1 -0.3633 -1.0188 -0.1347 28 1 -0.1399 2.3104 2.0601 29 1 0.6796 0.7275 2.0153 30 1 2.4234 1.5034 3.5202 31 1 0.8658 1.9785 4.2460 32 1 1.5747 2.4016 6.8824 33 1 3.7565 3.5126 2.2825 34 1 2.9320 5.0928 2.3276 35 1 2.7538 3.8399 0.1016 36 1 1.1964 4.3149 0.8244 37 1 1.7994 -1.7925 -1.1727 38 1 1.5872 -0.3075 -2.1362 39 1 3.8001 0.4743 -1.5532 40 1 3.9586 -1.2097 -2.1015 41 1 5.1272 -1.1263 -0.0400 42 1 1.8558 -0.1229 2.1256 43 1 1.5257 -1.6849 1.3419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906550209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:51 Heat of formation + Delta-G solvation = -43.920989 kcal Electronic energy + Delta-G solvation = -26131.378662 eV Core-core repulsion = 22598.154844 eV Total energy + Delta-G solvation = -3533.223818 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.46173 -40.38802 -38.70406 -37.27531 -36.11556 -35.02311 -33.08759 -31.87700 -30.54202 -29.16114 -28.66975 -25.98696 -25.00490 -24.32904 -23.64974 -21.81218 -20.95571 -19.99730 -18.57821 -18.31601 -17.84244 -17.12147 -16.80099 -16.61055 -16.40550 -15.96239 -15.64141 -15.40268 -15.24474 -15.15051 -14.81402 -14.57786 -14.35961 -13.64251 -13.51746 -13.32578 -13.16865 -13.01927 -12.93090 -12.70939 -12.52478 -12.43417 -12.23512 -12.19895 -12.03980 -11.96679 -11.70370 -11.35830 -10.85476 -10.68686 -10.59542 -9.90455 -9.66248 -8.66649 -7.88437 -5.40218 1.47271 1.49433 1.55979 1.57633 1.60163 2.02834 2.35146 2.50260 3.25855 3.29032 3.47218 3.52992 3.59384 3.80147 3.96729 4.18484 4.19996 4.30394 4.37765 4.45890 4.51971 4.55577 4.60764 4.68190 4.70530 4.74942 4.79249 4.89996 4.97772 5.03782 5.07497 5.20799 5.29931 5.35507 5.52899 5.59563 5.66722 5.80885 6.32886 6.34502 6.50942 7.09105 7.16957 7.17450 7.76312 8.30113 9.16233 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.005055 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.777949 B = 5537.921516 C = 5853.266898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.076 4.076 3 C 0.512 3.488 4 O -0.566 6.566 5 N -0.598 5.598 6 C 0.077 3.923 7 C 0.162 3.838 8 N -0.607 5.607 9 C -0.264 4.264 10 H 0.072 0.928 11 C -0.048 4.048 12 N -0.936 5.936 13 Si 0.973 3.027 14 H -0.265 1.265 15 H -0.285 1.285 16 H -0.297 1.297 17 C 0.130 3.870 18 C 0.106 3.894 19 C -0.103 4.103 20 C 0.081 3.919 21 N -0.708 5.708 22 C 0.508 3.492 23 O -0.613 6.613 24 C -0.141 4.141 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.123 0.877 30 H -0.015 1.015 31 H 0.079 0.921 32 H 0.252 0.748 33 H -0.004 1.004 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.399 0.601 42 H 0.098 0.902 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.426 -8.285 -17.282 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 C 0.302 3.698 4 O -0.447 6.447 5 N -0.329 5.329 6 C -0.046 4.046 7 C 0.035 3.965 8 N -0.331 5.331 9 C -0.394 4.394 10 H 0.089 0.911 11 C -0.244 4.244 12 N -0.582 5.582 13 Si 0.801 3.199 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.224 1.224 17 C 0.004 3.996 18 C -0.018 4.018 19 C -0.141 4.141 20 C -0.041 4.041 21 N -0.357 5.357 22 C 0.296 3.704 23 O -0.496 6.496 24 C -0.180 4.180 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.122 0.878 28 H 0.096 0.904 29 H 0.140 0.860 30 H 0.004 0.996 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.014 0.986 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.233 0.767 42 H 0.116 0.884 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.994 -8.192 -17.110 19.616 hybrid contribution 0.662 0.619 1.355 1.630 sum -4.332 -7.573 -15.755 18.010 Atomic orbital electron populations 1.22192 0.89111 1.05428 1.03920 1.20936 0.99792 0.90151 0.97044 1.21087 0.79889 0.88270 0.80600 1.90460 1.37220 1.78449 1.38600 1.48090 1.51055 1.10144 1.23606 1.23168 0.93963 1.01521 0.85978 1.21141 0.95993 0.83943 0.95381 1.44251 1.57614 1.07048 1.24173 1.19590 1.39617 0.91679 0.88543 0.91065 1.25883 1.01535 0.98414 0.98544 1.70165 1.49133 1.19578 1.19357 0.85132 0.77716 0.78648 0.78444 1.18925 1.21129 1.22422 1.21360 0.91703 0.98520 0.88026 1.21984 0.99980 0.81658 0.98155 1.21819 0.93971 1.01673 0.96605 1.22168 0.94510 1.03671 0.83799 1.45505 1.13456 1.68502 1.08262 1.20564 0.91471 0.75642 0.82684 1.90757 1.69484 1.52089 1.37294 1.22219 0.91219 1.05141 0.99470 0.90925 0.91011 0.87835 0.90441 0.86018 0.99644 0.90280 0.93897 0.98622 0.90884 0.89457 0.90547 0.87628 0.87736 0.89266 0.88024 0.76667 0.88368 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.10 71.98 0.58 -1.67 16 2 C -0.08 -1.62 0.50 -52.79 -0.03 -1.65 16 3 C 0.51 15.50 5.89 87.66 0.52 16.02 16 4 O -0.57 -19.05 12.47 -3.04 -0.04 -19.09 16 5 N -0.60 -20.20 2.94 -817.15 -2.40 -22.60 16 6 C 0.08 2.61 4.28 86.56 0.37 2.98 16 7 C 0.16 7.65 5.29 86.56 0.46 8.11 16 8 N -0.61 -30.53 2.97 -697.36 -2.07 -32.60 16 9 C -0.26 -14.29 9.59 84.03 0.81 -13.49 16 10 H 0.07 3.72 7.87 -2.91 -0.02 3.70 16 11 C -0.05 -2.66 4.98 84.86 0.42 -2.24 16 12 N -0.94 -55.15 11.03 21.65 0.24 -54.92 16 13 Si 0.97 43.98 29.58 68.60 2.03 46.01 16 14 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 17 C 0.13 5.67 6.67 86.41 0.58 6.24 16 18 C 0.11 3.78 6.60 86.42 0.57 4.35 16 19 C -0.10 -1.63 4.71 30.69 0.14 -1.48 16 20 C 0.08 1.59 6.52 86.50 0.56 2.16 16 21 N -0.71 -18.34 5.44 -467.30 -2.54 -20.89 16 22 C 0.51 16.60 7.38 87.71 0.65 17.24 16 23 O -0.61 -26.66 17.78 -3.04 -0.05 -26.71 16 24 C -0.14 -3.64 4.34 29.71 0.13 -3.51 16 25 H 0.07 1.23 4.90 -2.39 -0.01 1.22 16 26 H 0.07 1.04 8.13 -2.38 -0.02 1.02 16 27 H 0.10 0.92 8.13 -2.39 -0.02 0.90 16 28 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.12 3.39 2.55 -2.38 -0.01 3.38 16 30 H -0.01 -0.79 7.73 -2.39 -0.02 -0.81 16 31 H 0.08 4.14 5.91 -2.39 -0.01 4.12 16 32 H 0.25 14.34 8.31 -92.72 -0.77 13.56 16 33 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.07 3.00 7.93 -2.39 -0.02 2.98 16 35 H 0.09 3.00 6.99 -2.39 -0.02 2.98 16 36 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.11 1.11 8.12 -2.39 -0.02 1.09 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 2.29 5.13 -3.21 -0.02 2.28 16 40 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.40 9.79 8.80 -92.70 -0.82 8.98 16 42 H 0.10 3.12 4.32 -2.39 -0.01 3.11 16 43 H 0.15 2.66 8.10 -2.38 -0.02 2.64 16 Total: -1.00 -75.81 322.03 1.15 -74.67 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.22 Total: 23.05 kcal Atomic # 6 Polarization: 27.32 SS G_CDS: 5.76 Total: 33.08 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -6.77 Total: -131.01 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.09 Total: -45.80 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -75.81 1.15 -74.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906550209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.745 kcal (2) G-P(sol) polarization free energy of solvation -75.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds