Wall clock time and date at job start Tue Mar 31 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48495 * 109.47495 * 269.99948 * 3 2 1 5 5 H 1.48498 * 109.46994 * 30.00431 * 3 2 1 6 6 H 1.48499 * 109.46811 * 150.00077 * 3 2 1 7 7 C 1.37879 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99971 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99907 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.49918 * 59.93008 * 9 7 2 11 11 C 1.53039 * 109.49805 * 179.97438 * 9 7 2 12 12 C 1.53041 * 109.53647 * 181.34928 * 11 9 7 13 13 C 1.53194 * 109.30970 * 298.63046 * 12 11 9 14 14 N 1.46923 * 108.77322 * 54.64020 * 13 12 11 15 15 C 1.34784 * 120.62964 * 126.36706 * 14 13 12 16 16 O 1.21283 * 119.99649 * 179.97438 * 15 14 13 17 17 C 1.50694 * 119.99988 * 359.97438 * 15 14 13 18 18 N 1.46903 * 109.47066 * 180.02562 * 17 15 14 19 19 C 1.47189 * 110.99817 * 188.93621 * 18 17 15 20 20 C 1.52996 * 108.71396 * 167.61921 * 19 18 17 21 21 N 1.46012 * 110.04158 * 50.30806 * 20 19 18 22 22 C 1.33716 * 122.92322 * 341.83956 * 21 20 19 23 23 O 1.21283 * 118.62295 * 181.68840 * 22 21 20 24 24 C 1.46899 * 110.99937 * 66.04365 * 18 17 15 25 25 C 1.46927 * 118.73985 * 306.63925 * 14 13 12 26 26 H 0.97000 * 120.00172 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.45771 * 61.32870 * 11 9 7 28 28 H 1.08997 * 109.45929 * 301.36458 * 11 9 7 29 29 H 1.08996 * 109.49638 * 178.68503 * 12 11 9 30 30 H 1.08997 * 109.50160 * 58.58619 * 12 11 9 31 31 H 1.08998 * 109.58766 * 294.84948 * 13 12 11 32 32 H 1.09003 * 109.70123 * 174.49100 * 13 12 11 33 33 H 1.08998 * 109.47224 * 299.99701 * 17 15 14 34 34 H 1.09002 * 109.47054 * 60.00213 * 17 15 14 35 35 H 1.08991 * 109.59587 * 287.40740 * 19 18 17 36 36 H 1.09003 * 109.59445 * 47.86572 * 19 18 17 37 37 H 1.08998 * 109.38192 * 290.12943 * 20 19 18 38 38 H 1.09005 * 109.28113 * 170.42292 * 20 19 18 39 39 H 0.97001 * 118.53511 * 161.81595 * 21 20 19 40 40 H 1.08996 * 109.39168 * 293.82280 * 24 18 17 41 41 H 1.09009 * 109.38436 * 53.51434 * 24 18 17 42 42 H 1.09003 * 109.58790 * 173.15076 * 25 14 13 43 43 H 1.09007 * 109.58432 * 293.56887 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8750 -0.6799 0.8897 11 6 4.0223 -2.6367 -0.0001 12 6 5.5523 -2.6379 0.0345 13 6 6.0878 -1.9353 -1.2171 14 7 5.4872 -0.5971 -1.3016 15 6 6.2639 0.4978 -1.4221 16 8 5.7559 1.5969 -1.4914 17 6 7.7634 0.3562 -1.4707 18 7 8.3766 1.6846 -1.6031 19 6 9.8206 1.5751 -1.8664 20 6 10.3460 2.9453 -2.2991 21 7 9.9143 3.9688 -1.3515 22 6 8.9043 3.7861 -0.4945 23 8 8.5910 4.7008 0.2377 24 6 8.1409 2.4954 -0.4010 25 6 4.0241 -0.4746 -1.2462 26 1 -0.4850 0.8400 0.0004 27 1 3.6790 -3.1434 -0.9021 28 1 3.6389 -3.1578 0.8772 29 1 5.9148 -3.6656 0.0579 30 1 5.8966 -2.1098 0.9236 31 1 5.8208 -2.5123 -2.1025 32 1 7.1722 -1.8457 -1.1526 33 1 8.1138 -0.1154 -0.5526 34 1 8.0427 -0.2600 -2.3253 35 1 10.3344 1.2560 -0.9596 36 1 9.9932 0.8497 -2.6615 37 1 9.9601 3.1841 -3.2901 38 1 11.4352 2.9192 -2.3320 39 1 10.3812 4.8190 -1.3432 40 1 7.0760 2.7104 -0.3126 41 1 8.4710 1.9427 0.4787 42 1 3.7471 0.5785 -1.1984 43 1 3.5854 -0.9300 -2.1341 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912296976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:06 Heat of formation + Delta-G solvation = -51.488169 kcal Electronic energy + Delta-G solvation = -24977.533829 eV Core-core repulsion = 21443.981873 eV Total energy + Delta-G solvation = -3533.551956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64117 -39.66518 -37.59934 -36.72941 -34.69311 -33.48749 -31.99836 -30.72427 -30.01834 -28.97519 -25.64492 -25.23710 -24.11062 -22.94234 -22.08190 -19.80906 -19.51468 -18.55643 -17.61060 -17.37037 -16.73762 -16.55729 -16.08177 -15.48178 -15.27032 -14.90376 -14.56837 -14.22767 -14.00337 -13.96171 -13.70075 -13.29390 -13.00126 -12.86825 -12.67844 -12.57049 -12.20528 -12.14690 -11.89566 -11.57334 -11.37091 -11.07359 -10.65551 -10.41258 -10.12903 -10.06120 -9.78090 -9.57663 -9.33190 -9.23850 -9.10857 -8.68672 -8.60147 -8.09880 -6.10708 -4.12816 2.49114 2.88635 2.97525 3.14164 3.40227 3.48413 3.58735 3.65592 4.33369 4.39370 4.42837 4.54560 4.79363 4.81496 4.96247 5.06850 5.09614 5.15934 5.20806 5.21966 5.27886 5.43155 5.46548 5.65296 5.73741 5.92745 6.05210 6.13488 6.32895 6.39603 6.44838 6.51408 6.60533 6.66878 6.72125 6.83156 7.06760 7.12849 7.41076 7.70896 7.81357 8.04613 8.44530 8.54735 8.91996 9.50824 11.01175 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.004865 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.683400 B = 5753.560262 C = 6860.206691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.880 3.120 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.077 0.923 9 C 0.004 3.996 10 H 0.029 0.971 11 C -0.100 4.100 12 C -0.137 4.137 13 C 0.109 3.891 14 N -0.608 5.608 15 C 0.505 3.495 16 O -0.527 6.527 17 C 0.037 3.963 18 N -0.515 5.515 19 C 0.032 3.968 20 C 0.118 3.882 21 N -0.723 5.723 22 C 0.530 3.470 23 O -0.550 6.550 24 C 0.031 3.969 25 C 0.103 3.897 26 H 0.265 0.735 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.399 0.601 40 H 0.137 0.863 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.118 -2.700 -5.356 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.710 3.290 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.095 0.905 9 C -0.015 4.015 10 H 0.047 0.953 11 C -0.138 4.138 12 C -0.175 4.175 13 C -0.014 4.014 14 N -0.342 5.342 15 C 0.291 3.709 16 O -0.404 6.404 17 C -0.094 4.094 18 N -0.241 5.241 19 C -0.096 4.096 20 C -0.007 4.007 21 N -0.376 5.376 22 C 0.317 3.683 23 O -0.427 6.427 24 C -0.099 4.099 25 C -0.017 4.017 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.235 0.765 40 H 0.154 0.846 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.154 -1.494 -5.418 23.827 hybrid contribution 0.967 0.660 0.509 1.277 sum 24.121 -0.835 -4.910 24.630 Atomic orbital electron populations 1.69884 1.06298 1.27209 1.49892 1.25041 0.94758 0.99116 0.93997 0.86979 0.79631 0.83360 0.79028 1.19874 1.22272 1.18920 1.20941 0.88170 0.94614 1.51877 0.90469 1.19408 0.96895 0.92181 0.93037 0.95273 1.21437 0.91907 0.98877 1.01596 1.21990 0.98734 0.99517 0.97284 1.21704 0.96876 0.83721 0.99088 1.48446 1.08445 1.05697 1.71593 1.20340 0.88520 0.84672 0.77366 1.90687 1.74951 1.25432 1.49298 1.22112 0.93512 0.90764 1.03009 1.62155 1.11218 1.13623 1.37068 1.22559 0.87884 0.97482 1.01681 1.21465 0.99004 0.87019 0.93201 1.45534 1.35237 1.18761 1.38065 1.20126 0.79281 0.89759 0.79132 1.90776 1.66553 1.42344 1.43054 1.22555 1.04494 0.91252 0.91611 1.22518 0.75516 1.02575 1.01095 0.92468 0.92454 0.92197 0.91585 0.92073 0.91330 0.90974 0.91518 0.87359 0.93476 0.88327 0.90638 0.90092 0.76524 0.84584 0.91314 0.90272 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.07 2.15 5.45 -17.82 -0.10 2.05 16 3 Si 0.88 23.56 24.32 -169.99 -4.13 19.43 16 4 H -0.27 -7.39 6.92 56.52 0.39 -7.00 16 5 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 6 H -0.26 -7.04 6.53 56.52 0.37 -6.67 16 7 C -0.52 -14.27 9.15 -34.44 -0.31 -14.58 16 8 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 9 C 0.00 0.10 1.83 -91.87 -0.17 -0.07 16 10 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 11 C -0.10 -1.80 5.11 -26.69 -0.14 -1.94 16 12 C -0.14 -1.84 6.08 -26.61 -0.16 -2.00 16 13 C 0.11 1.35 6.35 -3.71 -0.02 1.33 16 14 N -0.61 -10.49 2.98 -173.03 -0.52 -11.01 16 15 C 0.50 8.66 7.46 -10.98 -0.08 8.58 16 16 O -0.53 -11.55 13.72 5.56 0.08 -11.47 16 17 C 0.04 0.41 3.78 -4.98 -0.02 0.39 16 18 N -0.51 -6.06 4.47 -237.54 -1.06 -7.12 16 19 C 0.03 0.23 5.60 -3.67 -0.02 0.21 16 20 C 0.12 0.78 7.39 -4.31 -0.03 0.75 16 21 N -0.72 -7.23 5.52 -61.05 -0.34 -7.57 16 22 C 0.53 7.64 7.81 -11.67 -0.09 7.55 16 23 O -0.55 -10.20 17.82 5.56 0.10 -10.10 16 24 C 0.03 0.44 5.14 -5.19 -0.03 0.41 16 25 C 0.10 2.26 5.09 -3.93 -0.02 2.24 16 26 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.63 5.93 -51.93 -0.31 0.32 16 33 H 0.07 0.62 7.61 -51.93 -0.39 0.23 16 34 H 0.11 0.89 7.73 -51.93 -0.40 0.49 16 35 H 0.05 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.10 0.47 7.91 -51.93 -0.41 0.06 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.40 3.40 8.84 -40.82 -0.36 3.04 16 40 H 0.14 2.48 6.01 -51.93 -0.31 2.17 16 41 H 0.07 0.85 8.05 -51.92 -0.42 0.43 16 42 H 0.08 1.98 2.32 -51.93 -0.12 1.86 16 43 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -36.77 330.68 -7.81 -44.57 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.50 Total: 0.14 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.19 Total: 4.91 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -1.14 Total: -52.46 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.18 Total: -21.57 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.13 Total: 19.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.77 -7.81 -44.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912296976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.914 kcal (2) G-P(sol) polarization free energy of solvation -36.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds