Wall clock time and date at job start Tue Mar 31 2020 03:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99726 * 2 1 4 4 H 1.48499 * 109.47297 * 90.00282 * 3 2 1 5 5 H 1.48499 * 109.47486 * 329.99692 * 3 2 1 6 6 H 1.48504 * 109.46900 * 209.99729 * 3 2 1 7 7 C 1.37879 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00242 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47444 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.33796 * 124.17557 * 269.70337 * 11 10 9 13 13 O 1.21534 * 123.77207 * 0.03651 * 12 11 10 14 14 N 1.34526 * 112.45520 * 179.86193 * 12 11 10 15 15 C 1.47317 * 106.62004 * 0.38429 * 14 12 11 16 16 H 1.09008 * 110.59766 * 241.25236 * 15 14 12 17 17 C 1.52995 * 110.73092 * 118.36979 * 15 14 12 18 18 N 1.46900 * 109.47590 * 60.95277 * 17 15 14 19 19 C 1.46848 * 110.99945 * 199.92867 * 18 17 15 20 20 C 1.53038 * 109.52136 * 174.15980 * 19 18 17 21 21 C 1.53120 * 109.27639 * 59.17733 * 20 19 18 22 22 C 1.53120 * 109.16515 * 302.34586 * 21 20 19 23 23 C 1.46842 * 110.99790 * 75.71586 * 18 17 15 24 24 C 1.34766 * 124.17942 * 89.99775 * 11 10 9 25 25 O 1.21234 * 127.15309 * 0.02562 * 24 11 10 26 26 H 0.96995 * 120.00239 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47281 * 300.00443 * 9 7 2 28 28 H 1.09000 * 109.47151 * 59.99908 * 9 7 2 29 29 H 1.08997 * 109.47350 * 300.00121 * 10 9 7 30 30 H 1.09008 * 109.46695 * 60.00052 * 10 9 7 31 31 H 0.97005 * 126.69263 * 180.12729 * 14 12 11 32 32 H 1.09001 * 109.46817 * 180.95478 * 17 15 14 33 33 H 1.09003 * 109.46688 * 300.94838 * 17 15 14 34 34 H 1.08997 * 109.46070 * 294.17172 * 19 18 17 35 35 H 1.08996 * 109.45990 * 54.14545 * 19 18 17 36 36 H 1.09007 * 109.50203 * 299.23939 * 20 19 18 37 37 H 1.08998 * 109.50579 * 179.12230 * 20 19 18 38 38 H 1.09003 * 109.52013 * 182.44188 * 21 20 19 39 39 H 1.08997 * 109.57385 * 62.28257 * 21 20 19 40 40 H 1.09006 * 109.50022 * 297.71624 * 22 21 20 41 41 H 1.08994 * 109.53669 * 177.61714 * 22 21 20 42 42 H 1.08998 * 109.46920 * 305.86040 * 23 18 17 43 43 H 1.09005 * 109.46371 * 65.84150 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 1.4465 2.6527 -0.7001 6 1 3.5466 1.4402 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 1.1425 -5.5844 1.1091 13 8 1.3757 -5.1916 2.2354 14 7 0.4800 -6.7230 0.8364 15 6 0.4162 -6.8320 -0.6314 16 1 -0.6196 -6.8331 -0.9711 17 6 1.1403 -8.0907 -1.1130 18 7 0.4928 -9.2780 -0.5394 19 6 1.3941 -10.4369 -0.5728 20 6 0.7437 -11.6119 0.1609 21 6 -0.5862 -11.9563 -0.5152 22 6 -1.4880 -10.7189 -0.5102 23 6 -0.7729 -9.5697 -1.2244 24 6 1.1338 -5.5866 -1.1127 25 8 1.3277 -5.2509 -2.2614 26 1 -0.4850 -0.8400 0.0004 27 1 0.6247 -2.5563 0.8919 28 1 0.6241 -2.5575 -0.8880 29 1 2.8713 -3.6048 -0.8890 30 1 2.8726 -3.6039 0.8910 31 1 0.1185 -7.3517 1.4805 32 1 1.0951 -8.1421 -2.2008 33 1 2.1820 -8.0551 -0.7939 34 1 1.5869 -10.7172 -1.6083 35 1 2.3343 -10.1798 -0.0851 36 1 0.5631 -11.3370 1.2002 37 1 1.4062 -12.4766 0.1225 38 1 -1.0736 -12.7644 0.0303 39 1 -0.4030 -12.2693 -1.5431 40 1 -1.7037 -10.4299 0.5185 41 1 -2.4202 -10.9451 -1.0277 42 1 -1.4065 -8.6829 -1.2101 43 1 -0.5699 -9.8544 -2.2568 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924850688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:10 Heat of formation + Delta-G solvation = -82.615167 kcal Electronic energy + Delta-G solvation = -24273.215748 eV Core-core repulsion = 20738.314024 eV Total energy + Delta-G solvation = -3534.901724 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.51104 -39.99783 -39.69300 -37.36565 -36.99369 -35.37073 -34.21599 -31.77491 -31.59208 -30.05530 -27.06472 -25.92288 -24.22263 -24.14999 -23.89276 -22.50266 -21.43467 -20.54652 -19.28340 -18.95517 -18.15128 -17.52079 -17.10710 -16.67462 -16.34938 -16.06848 -15.67304 -15.47469 -15.31061 -15.26198 -15.11039 -15.07449 -14.66074 -14.38566 -13.95359 -13.93454 -13.66531 -13.14679 -12.78291 -12.66718 -12.59258 -12.21275 -12.12116 -12.08544 -11.91125 -11.60696 -11.41277 -11.28001 -11.21184 -11.01464 -10.72512 -10.61041 -10.45371 -9.38335 -8.77085 -6.48374 0.47494 1.15303 1.52653 1.62494 1.80093 1.90353 2.11992 2.54572 2.63135 3.10299 3.12088 3.54924 3.66213 3.89901 3.94007 4.06504 4.10264 4.26150 4.30385 4.33305 4.38886 4.47572 4.51356 4.55250 4.61900 4.63872 4.72547 4.86654 4.96308 5.06891 5.10663 5.11224 5.17417 5.28601 5.32891 5.51597 5.81493 5.83412 5.94295 6.04894 6.07881 6.09705 6.29496 6.44733 7.08693 7.35097 8.63950 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.037246 B = 0.003026 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.587431 B = 9252.224529 C = 9371.363398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.038 4.038 3 Si 1.126 2.874 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.619 4.619 8 H 0.063 0.937 9 C 0.008 3.992 10 C 0.142 3.858 11 N -0.580 5.580 12 C 0.695 3.305 13 O -0.584 6.584 14 N -0.685 5.685 15 C 0.116 3.884 16 H 0.149 0.851 17 C 0.067 3.933 18 N -0.537 5.537 19 C 0.056 3.944 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.115 4.115 23 C 0.046 3.954 24 C 0.518 3.482 25 O -0.497 6.497 26 H 0.252 0.748 27 H -0.014 1.014 28 H -0.011 1.011 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.453 0.547 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 -27.440 -2.891 27.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.236 4.236 3 Si 0.945 3.055 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.657 4.657 8 H 0.081 0.919 9 C -0.030 4.030 10 C 0.021 3.979 11 N -0.325 5.325 12 C 0.395 3.605 13 O -0.461 6.461 14 N -0.350 5.350 15 C 0.006 3.994 16 H 0.166 0.834 17 C -0.063 4.063 18 N -0.262 5.262 19 C -0.072 4.072 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.082 4.082 24 C 0.306 3.694 25 O -0.368 6.368 26 H 0.062 0.938 27 H 0.004 0.996 28 H 0.007 0.993 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.301 0.699 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.524 -25.282 -2.454 25.407 hybrid contribution -0.052 -1.789 -0.490 1.856 sum -0.576 -27.072 -2.944 27.238 Atomic orbital electron populations 1.70887 1.08096 1.29695 1.48351 1.27612 0.96546 1.07167 0.92235 0.82850 0.74263 0.70416 0.77937 1.19673 1.20682 1.18793 1.22320 0.95154 0.92412 1.55862 0.91895 1.19351 0.95124 0.94375 0.94101 1.21551 0.94087 0.78791 1.03432 1.46671 1.53432 1.23729 1.08639 1.16108 0.78987 0.81765 0.83608 1.90969 1.61509 1.71566 1.22065 1.45243 1.59120 1.22961 1.07717 1.22083 1.03154 0.92818 0.81299 0.83371 1.22075 0.97919 0.87518 0.98754 1.61771 1.05314 1.03613 1.55499 1.22146 0.95469 0.90096 0.99454 1.21570 0.96893 0.96807 0.99883 1.21584 0.95767 0.97735 1.00788 1.21572 0.98200 0.94093 1.01380 1.22298 0.90601 0.99540 0.95734 1.21407 0.77796 0.85890 0.84351 1.90776 1.55080 1.72031 1.18932 0.93833 0.99599 0.99317 0.89074 0.89627 0.69894 0.90943 0.89895 0.94368 0.90727 0.91535 0.90574 0.91193 0.92176 0.91402 0.90592 0.90226 0.94223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.01 13.65 21.45 0.29 -59.72 16 2 C -0.04 -2.28 5.46 84.66 0.46 -1.82 16 3 Si 1.13 51.33 29.90 68.60 2.05 53.38 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.62 -36.58 9.11 25.60 0.23 -36.34 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.01 0.46 4.61 29.85 0.14 0.60 16 10 C 0.14 6.36 5.64 86.38 0.49 6.85 16 11 N -0.58 -21.90 2.60 -773.13 -2.01 -23.91 16 12 C 0.69 24.72 8.62 179.44 1.55 26.26 16 13 O -0.58 -25.71 17.48 -3.82 -0.07 -25.77 16 14 N -0.69 -16.27 6.14 -459.60 -2.82 -19.09 16 15 C 0.12 2.45 3.68 44.37 0.16 2.61 16 16 H 0.15 2.50 6.97 -2.38 -0.02 2.48 16 17 C 0.07 1.08 4.76 86.30 0.41 1.49 16 18 N -0.54 -7.03 4.48 -896.38 -4.01 -11.05 16 19 C 0.06 0.65 5.43 86.33 0.47 1.12 16 20 C -0.11 -1.11 6.09 30.65 0.19 -0.93 16 21 C -0.12 -1.08 6.00 30.67 0.18 -0.90 16 22 C -0.11 -1.11 6.09 30.65 0.19 -0.92 16 23 C 0.05 0.51 5.29 86.33 0.46 0.97 16 24 C 0.52 16.81 7.65 87.94 0.67 17.48 16 25 O -0.50 -18.85 17.76 -2.89 -0.05 -18.90 16 26 H 0.25 16.60 7.22 -92.71 -0.67 15.93 16 27 H -0.01 -0.87 8.01 -2.38 -0.02 -0.89 16 28 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 29 H 0.09 3.91 8.00 -2.39 -0.02 3.89 16 30 H 0.09 3.82 7.86 -2.38 -0.02 3.81 16 31 H 0.45 8.60 8.96 -92.70 -0.83 7.76 16 32 H 0.07 1.11 8.00 -2.39 -0.02 1.09 16 33 H 0.08 1.43 7.79 -2.39 -0.02 1.41 16 34 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 0.91 7.93 -2.39 -0.02 0.89 16 36 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 0.86 6.78 -2.39 -0.02 0.85 16 43 H 0.04 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -76.39 350.18 -0.75 -77.13 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.28 Total: 11.47 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 5.60 Total: 16.47 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -8.55 Total: -113.77 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.12 Total: -44.68 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Total: -76.39 -0.75 -77.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924850688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.482 kcal (2) G-P(sol) polarization free energy of solvation -76.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds