Wall clock time and date at job start Tue Mar 31 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48492 * 109.47511 * 240.00668 * 3 2 1 5 5 H 1.48502 * 109.46910 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47155 * 120.00120 * 3 2 1 7 7 C 1.38812 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99760 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00333 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64668 * 359.96831 * 9 7 2 11 11 C 1.54907 * 104.83495 * 204.15698 * 10 9 7 12 12 C 1.55157 * 101.58357 * 322.99444 * 11 10 9 13 13 H 1.09006 * 110.86794 * 277.06873 * 12 11 10 14 14 C 1.52994 * 110.72624 * 153.86263 * 12 11 10 15 15 H 1.09003 * 109.49449 * 305.08916 * 14 12 11 16 16 C 1.53042 * 109.52381 * 65.16433 * 14 12 11 17 17 C 1.53042 * 109.53728 * 181.33334 * 16 14 12 18 18 C 1.53617 * 109.24358 * 298.51495 * 17 16 14 19 19 N 1.46924 * 108.54482 * 54.85479 * 18 17 16 20 20 C 1.34781 * 120.63026 * 126.36521 * 19 18 17 21 21 O 1.21352 * 119.99996 * 188.42466 * 20 19 18 22 22 C 1.49450 * 119.99926 * 8.42920 * 20 19 18 23 23 N 1.34772 * 119.99862 * 186.74215 * 22 20 19 24 24 O 1.21347 * 120.00206 * 6.74459 * 22 20 19 25 25 C 1.46925 * 118.73764 * 306.09681 * 19 18 17 26 26 C 1.47025 * 125.65261 * 180.02562 * 9 7 2 27 27 H 0.96998 * 119.99465 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.37187 * 323.00078 * 10 9 7 29 29 H 1.09010 * 110.36817 * 85.21121 * 10 9 7 30 30 H 1.09002 * 111.00741 * 204.91677 * 11 10 9 31 31 H 1.09004 * 111.00260 * 81.06235 * 11 10 9 32 32 H 1.08997 * 109.46333 * 301.35512 * 16 14 12 33 33 H 1.09002 * 109.45831 * 61.33176 * 16 14 12 34 34 H 1.08999 * 109.49447 * 58.59125 * 17 16 14 35 35 H 1.09002 * 109.49454 * 178.65268 * 17 16 14 36 36 H 1.09006 * 109.74346 * 295.11513 * 18 17 16 37 37 H 1.09003 * 109.66470 * 174.54955 * 18 17 16 38 38 H 0.96993 * 120.00271 * 359.97438 * 23 22 20 39 39 H 0.97001 * 120.00049 * 179.72588 * 23 22 20 40 40 H 1.09003 * 109.58508 * 173.64744 * 25 19 18 41 41 H 1.08999 * 109.58556 * 294.06819 * 25 19 18 42 42 H 1.09006 * 109.87779 * 59.49455 * 26 9 7 43 43 H 1.08993 * 110.01030 * 298.40459 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1414 -2.5331 0.0007 11 6 -0.4011 -3.9321 0.6130 12 6 0.7784 -4.7524 0.0273 13 1 0.5472 -5.1005 -0.9795 14 6 1.1239 -5.9311 0.9394 15 1 1.3212 -5.5655 1.9472 16 6 -0.0495 -6.9130 0.9729 17 6 0.2825 -8.0755 1.9113 18 6 1.5184 -8.8175 1.3804 19 7 2.6093 -7.8477 1.2124 20 6 3.8105 -8.0591 1.7859 21 8 4.6526 -7.1855 1.7700 22 6 4.1054 -9.3695 2.4413 23 7 5.2510 -9.5349 3.1316 24 8 3.3134 -10.2845 2.3519 25 6 2.3676 -6.6461 0.4022 26 6 1.9318 -3.7275 -0.0005 27 1 -0.4849 0.8401 0.0004 28 1 -0.5988 -1.7586 0.6164 29 1 -0.5283 -2.4850 -1.0174 30 1 -1.3588 -4.3326 0.2804 31 1 -0.3506 -3.8977 1.7013 32 1 -0.9420 -6.4003 1.3317 33 1 -0.2303 -7.2972 -0.0310 34 1 0.4877 -7.6898 2.9099 35 1 -0.5631 -8.7621 1.9532 36 1 1.2872 -9.2776 0.4197 37 1 1.8190 -9.5858 2.0928 38 1 5.8843 -8.8037 3.2028 39 1 5.4406 -10.3841 3.5604 40 1 3.2287 -5.9812 0.4689 41 1 2.2042 -6.9326 -0.6367 42 1 2.5587 -3.8506 0.8827 43 1 2.5294 -3.8664 -0.9014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961241293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:04 Heat of formation + Delta-G solvation = -63.341985 kcal Electronic energy + Delta-G solvation = -24591.471122 eV Core-core repulsion = 21057.405146 eV Total energy + Delta-G solvation = -3534.065976 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01840 -40.23187 -39.28949 -38.16219 -35.40080 -34.63752 -33.57049 -32.47810 -30.89348 -28.69881 -27.63827 -26.38012 -24.79765 -23.93023 -22.11287 -21.72993 -20.88510 -20.65516 -19.01785 -18.71419 -18.22936 -17.43624 -17.14637 -16.78831 -16.34497 -16.13574 -15.72371 -15.58480 -15.09860 -14.98585 -14.63864 -14.43076 -14.17348 -13.95389 -13.71678 -13.39509 -13.28332 -13.02730 -12.71203 -12.67051 -12.26679 -12.14688 -12.06427 -11.83575 -11.81036 -11.70450 -11.43643 -11.28282 -11.08871 -10.93002 -10.73859 -10.26697 -9.76388 -8.87962 -7.77665 -5.21962 0.28226 1.37953 1.44637 1.48283 1.54736 2.06051 2.49243 2.64739 3.30803 3.44284 3.63017 3.68160 3.80325 3.97261 4.10097 4.22258 4.24354 4.31142 4.46546 4.58447 4.64204 4.70890 4.77451 4.86408 4.88083 4.97715 4.98718 5.08635 5.14231 5.18603 5.33050 5.35640 5.41807 5.44905 5.54838 5.69187 5.71061 5.83517 5.90402 6.18432 6.32209 6.68993 6.98525 7.11586 7.79491 8.43410 9.23817 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.003599 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.564041 B = 7777.411997 C = 8740.883817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.118 4.118 12 C -0.075 4.075 13 H 0.087 0.913 14 C -0.074 4.074 15 H 0.055 0.945 16 C -0.112 4.112 17 C -0.128 4.128 18 C 0.068 3.932 19 N -0.576 5.576 20 C 0.493 3.507 21 O -0.552 6.552 22 C 0.521 3.479 23 N -0.798 5.798 24 O -0.530 6.530 25 C 0.113 3.887 26 C 0.136 3.864 27 H 0.247 0.753 28 H 0.069 0.931 29 H -0.013 1.013 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.421 0.579 39 H 0.425 0.575 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.015 0.985 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 -23.221 5.274 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.093 0.907 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.156 4.156 12 C -0.095 4.095 13 H 0.106 0.894 14 C -0.094 4.094 15 H 0.074 0.926 16 C -0.149 4.149 17 C -0.166 4.166 18 C -0.052 4.052 19 N -0.308 5.308 20 C 0.276 3.724 21 O -0.431 6.431 22 C 0.300 3.700 23 N -0.365 5.365 24 O -0.408 6.408 25 C -0.009 4.009 26 C 0.011 3.989 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.005 0.995 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.153 0.847 38 H 0.253 0.747 39 H 0.260 0.740 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.033 0.967 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.331 -23.031 5.109 23.825 hybrid contribution 0.904 1.505 -0.015 1.756 sum 4.235 -21.526 5.094 22.523 Atomic orbital electron populations 1.70061 1.06133 1.25084 1.58503 1.25632 0.96694 1.00923 1.02631 0.85127 0.77173 0.78725 0.78161 1.20448 1.21575 1.20396 1.19421 0.90908 0.84130 1.42845 0.90698 1.44845 1.02994 1.00912 1.86725 1.21747 0.83819 0.95354 0.96468 1.22843 0.98085 0.95217 0.99465 1.22052 0.94641 0.93218 0.99561 0.89423 1.21340 0.95350 0.94385 0.98307 0.92598 1.21599 0.96896 0.95359 1.01075 1.22001 0.98093 0.97796 0.98736 1.23096 0.85655 0.91616 1.04833 1.48139 1.11455 1.23100 1.48100 1.20452 0.83151 0.88404 0.80392 1.90780 1.47368 1.45501 1.59466 1.19843 0.83074 0.87574 0.79486 1.43435 1.20267 1.20525 1.52263 1.90546 1.46212 1.42864 1.61222 1.21823 0.98621 0.85820 0.94682 1.21507 0.95264 0.85149 0.97003 0.94289 0.91296 0.99476 0.89316 0.92430 0.90821 0.90232 0.92587 0.88050 0.89858 0.84739 0.74690 0.73992 0.90898 0.89224 0.96747 0.96490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.92 10.09 21.65 0.22 -57.70 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 3 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.24 -14.39 10.27 84.03 0.86 -13.53 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.63 -34.03 3.39 -691.98 -2.35 -36.38 16 10 C 0.15 7.64 5.89 86.85 0.51 8.15 16 11 C -0.12 -4.31 5.62 31.99 0.18 -4.13 16 12 C -0.08 -2.48 2.49 -9.61 -0.02 -2.50 16 13 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 14 C -0.07 -1.96 1.71 -10.72 -0.02 -1.98 16 15 H 0.06 1.72 8.13 -2.39 -0.02 1.70 16 16 C -0.11 -2.19 5.02 30.62 0.15 -2.04 16 17 C -0.13 -2.15 6.10 30.82 0.19 -1.97 16 18 C 0.07 1.25 6.01 86.51 0.52 1.77 16 19 N -0.58 -13.51 2.97 -819.66 -2.43 -15.94 16 20 C 0.49 12.31 7.73 87.27 0.67 12.98 16 21 O -0.55 -16.97 15.93 -3.25 -0.05 -17.02 16 22 C 0.52 10.07 8.01 87.27 0.70 10.76 16 23 N -0.80 -9.29 8.86 -174.51 -1.55 -10.84 16 24 O -0.53 -11.39 14.01 -3.24 -0.05 -11.44 16 25 C 0.11 2.92 5.41 86.36 0.47 3.38 16 26 C 0.14 5.89 5.96 86.73 0.52 6.41 16 27 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.07 3.98 5.87 -2.39 -0.01 3.97 16 29 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 30 H 0.09 2.70 8.10 -2.39 -0.02 2.68 16 31 H 0.06 2.13 8.04 -2.39 -0.02 2.11 16 32 H 0.07 1.45 7.38 -2.39 -0.02 1.43 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.14 2.58 4.30 -48.52 -0.21 2.38 16 38 H 0.42 4.32 8.32 -92.71 -0.77 3.55 16 39 H 0.42 2.67 8.93 -92.71 -0.83 1.84 16 40 H 0.07 2.29 6.21 -2.39 -0.01 2.28 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.01 0.65 7.55 -2.38 -0.02 0.63 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.89 335.95 0.26 -73.63 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -0.76 Total: 12.72 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 5.20 Total: 13.88 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -6.11 Total: -120.87 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.10 Total: -28.46 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -73.89 0.26 -73.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961241293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.286 kcal (2) G-P(sol) polarization free energy of solvation -73.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds