Wall clock time and date at job start Tue Mar 31 2020 03:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72395 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71953 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72203 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99939 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.63464 * 36.69056 * 10 9 7 12 12 C 1.55150 * 110.72358 * 273.54912 * 10 9 7 13 13 C 1.54905 * 101.58463 * 206.13221 * 12 10 9 14 14 N 1.47429 * 104.83123 * 37.00890 * 13 12 10 15 15 C 1.34772 * 125.65039 * 155.83485 * 14 13 12 16 16 O 1.21280 * 120.00125 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00188 * 0.02835 * 15 14 13 18 18 C 1.52997 * 109.47311 * 180.02562 * 17 15 14 19 19 H 1.09001 * 109.60102 * 304.66936 * 18 17 15 20 20 C 1.53344 * 109.60198 * 184.18374 * 18 17 15 21 21 C 1.53063 * 108.43695 * 172.72380 * 20 18 17 22 22 C 1.50170 * 109.89064 * 48.88904 * 21 20 18 23 23 O 1.21282 * 118.24584 * 162.39833 * 22 21 20 24 24 N 1.33353 * 123.51180 * 342.41389 * 22 21 20 25 25 C 1.45754 * 124.10615 * 2.24619 * 24 22 21 26 26 C 1.47026 * 108.70311 * 335.87258 * 14 13 12 27 27 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 28 28 H 0.97000 * 120.00754 * 359.97438 * 9 7 2 29 29 H 1.09007 * 111.00464 * 324.21212 * 12 10 9 30 30 H 1.09000 * 111.00883 * 88.05499 * 12 10 9 31 31 H 1.08996 * 110.36908 * 155.84352 * 13 12 10 32 32 H 1.08998 * 110.36688 * 278.17467 * 13 12 10 33 33 H 1.09009 * 109.46632 * 299.99702 * 17 15 14 34 34 H 1.09003 * 109.47273 * 59.99401 * 17 15 14 35 35 H 1.09003 * 109.67549 * 292.44402 * 20 18 17 36 36 H 1.09000 * 109.67438 * 52.97865 * 20 18 17 37 37 H 1.08998 * 109.40085 * 288.75573 * 21 20 18 38 38 H 1.09005 * 109.32942 * 168.97143 * 21 20 18 39 39 H 0.96997 * 117.94953 * 182.22603 * 24 22 21 40 40 H 1.08997 * 109.30709 * 220.59048 * 25 24 22 41 41 H 1.09003 * 109.13256 * 101.10388 * 25 24 22 42 42 H 1.08995 * 109.88218 * 241.64643 * 26 14 13 43 43 H 1.08991 * 109.88449 * 120.47513 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2852 2.7465 -0.0069 6 1 3.0988 1.6994 1.2159 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 2.0580 -3.6567 0.0169 11 1 2.9585 -3.5777 0.6261 12 6 2.4103 -4.0938 -1.4294 13 6 2.5145 -5.6314 -1.2731 14 7 1.4565 -5.9853 -0.3093 15 6 0.8624 -7.1903 -0.2023 16 8 -0.0007 -7.3690 0.6308 17 6 1.2707 -8.3156 -1.1177 18 6 0.4486 -9.5636 -0.7897 19 1 0.5605 -9.8080 0.2666 20 6 0.9331 -10.7388 -1.6473 21 6 0.2236 -12.0093 -1.1727 22 6 -1.2531 -11.7594 -1.0636 23 8 -1.9957 -12.7173 -1.0198 24 7 -1.7918 -10.5405 -1.0125 25 6 -1.0255 -9.3039 -1.1029 26 6 1.1561 -4.8056 0.5153 27 1 -0.4850 0.8400 -0.0041 28 1 0.3555 -2.3881 0.0113 29 1 1.6143 -3.8246 -2.1238 30 1 3.3626 -3.6678 -1.7454 31 1 2.3361 -6.1229 -2.2295 32 1 3.4931 -5.9074 -0.8804 33 1 1.0918 -8.0249 -2.1529 34 1 2.3301 -8.5310 -0.9786 35 1 0.6919 -10.5534 -2.6940 36 1 2.0108 -10.8561 -1.5338 37 1 0.6148 -12.2998 -0.1977 38 1 0.4030 -12.8116 -1.8885 39 1 -2.7538 -10.4726 -0.9089 40 1 -1.4231 -8.5807 -0.3909 41 1 -1.1139 -8.9018 -2.1122 42 1 1.3730 -5.0199 1.5617 43 1 0.1078 -4.5304 0.4006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968895713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:50 Heat of formation + Delta-G solvation = -68.377569 kcal Electronic energy + Delta-G solvation = -23692.812312 eV Core-core repulsion = 20158.527977 eV Total energy + Delta-G solvation = -3534.284335 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71024 -39.78849 -37.75542 -36.60708 -34.21689 -33.65185 -31.91446 -31.32710 -29.62105 -28.30731 -26.62882 -24.78057 -23.70931 -22.89543 -22.09745 -20.14423 -19.43269 -19.09186 -17.46448 -17.38464 -17.04315 -16.36586 -15.93319 -15.85282 -15.35430 -14.86144 -14.50168 -14.29529 -13.91540 -13.64450 -13.57620 -13.40614 -13.28796 -12.85519 -12.50786 -12.38113 -11.93131 -11.82853 -11.73792 -11.53999 -11.29798 -11.24321 -11.17998 -10.88744 -10.76560 -10.42649 -10.16964 -9.98864 -9.83033 -9.71641 -9.22795 -9.02425 -8.50318 -7.11055 -5.87701 -3.18791 2.44623 2.64062 3.01526 3.10791 3.37147 3.42027 3.43235 4.19779 4.26941 4.31193 4.43603 4.49256 4.64677 4.92931 4.97265 5.02177 5.07072 5.18806 5.25034 5.30049 5.32541 5.40523 5.44302 5.48033 5.48354 5.52916 5.68473 5.77556 5.88362 5.93625 6.06834 6.16231 6.28923 6.47627 6.52222 6.55843 6.82525 7.14088 7.58866 7.62813 8.00810 8.19424 8.29597 9.41020 9.94825 10.29284 11.34364 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.041667 B = 0.002573 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.835903 B =10878.468585 C =11263.645131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.171 3.829 11 H 0.064 0.936 12 C -0.155 4.155 13 C 0.097 3.903 14 N -0.611 5.611 15 C 0.522 3.478 16 O -0.545 6.545 17 C -0.129 4.129 18 C -0.088 4.088 19 H 0.090 0.910 20 C -0.120 4.120 21 C -0.134 4.134 22 C 0.517 3.483 23 O -0.567 6.567 24 N -0.715 5.715 25 C 0.106 3.894 26 C 0.101 3.899 27 H 0.258 0.742 28 H 0.386 0.614 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.400 0.600 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 -19.550 -5.309 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.357 5.357 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.197 4.197 13 C -0.026 4.026 14 N -0.345 5.345 15 C 0.310 3.690 16 O -0.424 6.424 17 C -0.169 4.169 18 C -0.107 4.107 19 H 0.109 0.891 20 C -0.158 4.158 21 C -0.174 4.174 22 C 0.304 3.696 23 O -0.447 6.447 24 N -0.366 5.366 25 C -0.018 4.018 26 C -0.023 4.023 27 H 0.068 0.932 28 H 0.221 0.779 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.235 0.765 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.804 -20.035 -4.838 21.163 hybrid contribution -0.080 1.219 -0.075 1.224 sum 4.724 -18.816 -4.912 20.012 Atomic orbital electron populations 1.69647 1.05186 1.26082 1.56808 1.24780 0.95524 0.97853 1.02434 0.86244 0.78535 0.83327 0.77896 1.21159 1.21640 1.21146 1.19152 0.91013 0.83803 1.43817 0.91006 1.42357 1.05788 0.99370 1.88156 1.21187 0.94098 0.85708 0.93054 0.91849 1.23573 1.02757 0.91576 1.01763 1.22425 0.90385 0.97807 0.91970 1.48531 1.38712 1.10742 1.36524 1.20254 0.81567 0.82456 0.84704 1.90676 1.32061 1.82123 1.37530 1.21655 1.01886 0.93002 1.00386 1.21214 0.93867 0.93964 1.01686 0.89134 1.21759 1.00901 0.93127 1.00010 1.21620 0.91328 0.99729 1.04694 1.20208 0.91520 0.82538 0.75308 1.90754 1.61785 1.40775 1.51349 1.45488 1.11633 1.05878 1.73599 1.21699 0.91678 0.86002 1.02415 1.22289 1.00931 0.84691 0.94346 0.93246 0.77947 0.90602 0.90522 0.91233 0.91537 0.88514 0.88212 0.90864 0.90127 0.88135 0.88100 0.76529 0.88150 0.91963 0.91641 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.13 13.06 55.49 0.72 -26.40 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -16.76 5.25 -51.65 -0.27 -17.03 16 10 C 0.17 3.06 3.59 -66.10 -0.24 2.82 16 11 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 12 C -0.16 -2.28 6.77 -24.59 -0.17 -2.45 16 13 C 0.10 1.06 6.69 -2.53 -0.02 1.04 16 14 N -0.61 -8.12 3.33 -170.53 -0.57 -8.69 16 15 C 0.52 6.54 7.60 -10.99 -0.08 6.46 16 16 O -0.55 -8.69 14.34 5.56 0.08 -8.61 16 17 C -0.13 -0.99 4.19 -27.88 -0.12 -1.11 16 18 C -0.09 -0.69 1.90 -90.48 -0.17 -0.86 16 19 H 0.09 0.84 7.95 -51.93 -0.41 0.43 16 20 C -0.12 -0.69 5.32 -26.52 -0.14 -0.83 16 21 C -0.13 -0.99 6.03 -28.11 -0.17 -1.16 16 22 C 0.52 5.73 7.71 -11.87 -0.09 5.64 16 23 O -0.57 -8.63 17.78 5.56 0.10 -8.53 16 24 N -0.72 -7.00 5.45 -61.39 -0.33 -7.33 16 25 C 0.11 0.96 6.10 -4.48 -0.03 0.93 16 26 C 0.10 1.64 6.62 -3.06 -0.02 1.62 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.39 9.78 7.51 -40.82 -0.31 9.47 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.59 7.47 -51.93 -0.39 0.20 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.60 7.82 -51.92 -0.41 0.19 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.40 3.74 8.80 -40.82 -0.36 3.38 16 40 H 0.10 1.13 6.17 -51.93 -0.32 0.81 16 41 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.30 7.68 -51.93 -0.40 0.90 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -33.05 347.11 -8.34 -41.39 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.78 Total: 8.39 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.49 Total: 5.17 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.45 Total: -59.46 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.18 Total: -17.14 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.05 -8.34 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968895713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.988 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds