Wall clock time and date at job start Tue Mar 31 2020 03:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.67357 * 2 1 4 4 O 1.21273 * 120.00281 * 117.89012 * 3 2 1 5 5 N 1.34782 * 119.99636 * 297.89260 * 3 2 1 6 6 C 1.47014 * 125.65133 * 354.54110 * 5 3 2 7 7 C 1.54315 * 107.27509 * 181.02705 * 6 5 3 8 8 C 1.55162 * 102.94280 * 22.18907 * 7 6 5 9 9 H 1.09002 * 111.03131 * 82.59099 * 8 7 6 10 10 N 1.46497 * 111.00716 * 206.42771 * 8 7 6 11 11 C 1.36937 * 119.99852 * 266.92543 * 10 8 7 12 12 H 1.08004 * 120.00061 * 0.26913 * 11 10 8 13 13 C 1.38813 * 120.00221 * 180.27587 * 11 10 8 14 14 N 1.31619 * 119.99804 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00317 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47123 * 60.00054 * 15 13 11 17 17 H 1.48504 * 109.47083 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46910 * 299.99875 * 15 13 11 19 19 C 1.47424 * 125.64495 * 174.50396 * 5 3 2 20 20 C 1.53349 * 109.70213 * 120.51553 * 2 1 3 21 21 C 1.52899 * 108.68622 * 52.23340 * 20 2 1 22 22 N 1.45756 * 110.49629 * 50.72455 * 21 20 2 23 23 C 1.33349 * 124.10778 * 340.96386 * 22 21 20 24 24 O 1.21285 * 118.24788 * 182.22302 * 23 22 21 25 25 C 1.50184 * 123.50822 * 2.19728 * 23 22 21 26 26 H 1.09005 * 109.46667 * 66.58808 * 1 2 3 27 27 H 1.09002 * 109.47148 * 186.58004 * 1 2 3 28 28 H 1.08993 * 109.47559 * 306.58473 * 1 2 3 29 29 H 1.09008 * 109.88389 * 300.44383 * 6 5 3 30 30 H 1.09005 * 109.88541 * 61.44996 * 6 5 3 31 31 H 1.09005 * 110.71974 * 263.82742 * 7 6 5 32 32 H 1.08999 * 110.72403 * 140.55950 * 7 6 5 33 33 H 0.96996 * 120.00370 * 87.19165 * 10 8 7 34 34 H 0.96997 * 120.00769 * 180.02562 * 14 13 11 35 35 H 1.08995 * 110.37158 * 37.06060 * 19 5 3 36 36 H 1.09004 * 110.36375 * 274.73754 * 19 5 3 37 37 H 1.09006 * 109.60068 * 171.97934 * 20 2 1 38 38 H 1.09001 * 109.60255 * 292.46570 * 20 2 1 39 39 H 1.09001 * 109.28509 * 290.41860 * 21 20 2 40 40 H 1.08999 * 109.30831 * 171.04567 * 21 20 2 41 41 H 0.97002 * 117.95006 * 160.93778 * 22 21 20 42 42 H 1.08991 * 109.40039 * 222.29176 * 25 23 22 43 43 H 1.08996 * 109.40188 * 102.54691 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0373 1.4190 0.0000 4 8 2.7040 1.8247 0.9282 5 7 1.7500 2.2374 -1.0317 6 6 1.0532 1.8477 -2.2662 7 6 0.9735 3.1012 -3.1626 8 6 2.1280 3.9872 -2.6246 9 1 3.0835 3.6896 -3.0565 10 7 1.8614 5.4060 -2.8741 11 6 2.3413 6.0035 -4.0089 12 1 2.9127 5.4279 -4.7221 13 6 2.0935 7.3492 -4.2426 14 7 1.3969 8.0507 -3.3737 15 14 2.7487 8.1646 -5.7903 16 1 2.1868 7.4837 -6.9843 17 1 2.3507 9.5953 -5.8025 18 1 4.2301 8.0632 -5.8139 19 6 2.0816 3.6718 -1.1087 20 6 2.0469 -0.7331 1.2437 21 6 1.3769 -2.1055 1.3173 22 7 1.5042 -2.8044 0.0446 23 6 1.7816 -2.2044 -1.1135 24 8 1.8227 -2.8845 -2.1170 25 6 2.0454 -0.7315 -1.2419 26 1 -0.3633 0.4084 -0.9431 27 1 -0.3633 -1.0209 0.1178 28 1 -0.3634 0.6124 0.8251 29 1 1.6124 1.0627 -2.7755 30 1 0.0497 1.4938 -2.0297 31 1 0.0134 3.6026 -3.0401 32 1 1.1426 2.8398 -4.2072 33 1 1.3482 5.9230 -2.2337 34 1 1.2233 8.9909 -3.5371 35 1 3.0528 3.8617 -0.6517 36 1 1.3091 4.2664 -0.6210 37 1 3.1275 -0.8573 1.1722 38 1 1.8008 -0.1576 2.1361 39 1 0.3207 -1.9782 1.5544 40 1 1.8504 -2.6961 2.1016 41 1 1.3796 -3.7664 0.0397 42 1 1.5355 -0.3481 -2.1256 43 1 3.1175 -0.5631 -1.3424 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969077467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:44 Heat of formation + Delta-G solvation = -50.445953 kcal Electronic energy + Delta-G solvation = -24691.996673 eV Core-core repulsion = 21158.489911 eV Total energy + Delta-G solvation = -3533.506762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36513 -39.61886 -37.65654 -36.67317 -34.55361 -33.83646 -31.50330 -30.04678 -29.64243 -28.36547 -27.64326 -25.20810 -23.99815 -23.06987 -22.23844 -20.16831 -19.37153 -18.80217 -17.67171 -17.36534 -16.91803 -16.30825 -16.20669 -15.57051 -15.08614 -14.95358 -14.81165 -14.40346 -13.89138 -13.81982 -13.37127 -13.24443 -13.01714 -12.84154 -12.56762 -12.35638 -11.99124 -11.88628 -11.85044 -11.65310 -11.27398 -11.19205 -11.00686 -10.79890 -10.72116 -10.39631 -10.29918 -10.12004 -9.79976 -9.53974 -9.41528 -8.99252 -8.47228 -7.09270 -5.85769 -3.16640 2.36190 2.59474 2.96270 2.99263 3.39938 3.44908 3.45496 4.05310 4.19964 4.30179 4.41664 4.51979 4.67592 4.76421 4.91496 4.97216 5.02130 5.06023 5.22428 5.29916 5.37253 5.42873 5.46100 5.52712 5.57779 5.67818 5.71030 5.76176 5.87721 5.99015 6.11303 6.17933 6.31539 6.43441 6.48385 6.57387 6.84682 6.98364 7.61891 7.62811 7.91423 8.16967 8.31602 9.43251 9.96567 10.31368 11.36276 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.031554 B = 0.003283 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.160742 B = 8526.502803 C = 8997.289467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.077 4.077 3 C 0.538 3.462 4 O -0.541 6.541 5 N -0.608 5.608 6 C 0.087 3.913 7 C -0.156 4.156 8 C 0.172 3.828 9 H 0.067 0.933 10 N -0.713 5.713 11 C -0.247 4.247 12 H 0.072 0.928 13 C -0.009 4.009 14 N -0.930 5.930 15 Si 0.910 3.090 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.285 1.285 19 C 0.096 3.904 20 C -0.113 4.113 21 C 0.108 3.892 22 N -0.721 5.721 23 C 0.528 3.472 24 O -0.555 6.555 25 C -0.138 4.138 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.386 0.614 34 H 0.258 0.742 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.399 0.601 42 H 0.118 0.882 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -20.582 9.490 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.080 4.080 3 C 0.325 3.675 4 O -0.418 6.418 5 N -0.341 5.341 6 C -0.035 4.035 7 C -0.198 4.198 8 C 0.060 3.940 9 H 0.085 0.915 10 N -0.353 5.353 11 C -0.378 4.378 12 H 0.090 0.910 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.740 3.260 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.211 1.211 19 C -0.027 4.027 20 C -0.151 4.151 21 C -0.016 4.016 22 N -0.373 5.373 23 C 0.315 3.685 24 O -0.434 6.434 25 C -0.177 4.177 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.221 0.779 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.235 0.765 42 H 0.136 0.864 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.463 -20.394 9.366 22.577 hybrid contribution 0.023 0.366 -0.569 0.677 sum -2.441 -20.028 8.797 22.011 Atomic orbital electron populations 1.22121 0.91901 1.03186 1.03912 1.20826 0.97882 0.92732 0.96566 1.19868 0.79892 0.86327 0.81407 1.90701 1.39026 1.76630 1.35435 1.48390 1.57274 1.10895 1.17505 1.22549 0.96497 0.99159 0.85342 1.23450 1.02691 0.94820 0.98801 1.21294 0.95785 0.86445 0.90494 0.91494 1.42248 1.64239 1.03797 1.25021 1.19187 1.28113 0.92673 0.97837 0.90981 1.24770 1.00570 0.96543 0.98647 1.69647 1.43767 1.08203 1.36162 0.86240 0.78574 0.78481 0.82700 1.21131 1.21642 1.21139 1.22642 1.01317 0.79358 0.99377 1.21746 1.01283 0.94035 0.98004 1.21481 1.01314 0.93657 0.85124 1.45490 1.72222 1.11754 1.07849 1.19984 0.75450 0.90407 0.82692 1.90780 1.52128 1.65100 1.35364 1.22065 1.04787 0.91185 0.99677 0.90778 0.91095 0.91320 0.91172 0.91338 0.90517 0.90556 0.77936 0.93266 0.90456 0.91298 0.90188 0.88505 0.91020 0.90090 0.76547 0.86410 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 7.76 37.15 0.29 -0.98 16 2 C -0.08 -0.75 0.49 -155.44 -0.08 -0.82 16 3 C 0.54 7.38 6.56 -10.98 -0.07 7.31 16 4 O -0.54 -9.25 16.11 5.56 0.09 -9.16 16 5 N -0.61 -8.55 3.32 -170.53 -0.57 -9.12 16 6 C 0.09 1.06 5.21 -3.07 -0.02 1.05 16 7 C -0.16 -2.40 6.65 -24.90 -0.17 -2.57 16 8 C 0.17 3.19 3.71 -65.78 -0.24 2.94 16 9 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 10 N -0.71 -16.91 5.24 -51.35 -0.27 -17.18 16 11 C -0.25 -6.56 9.96 -15.06 -0.15 -6.71 16 12 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 13 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 14 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 15 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.10 1.62 6.58 -2.53 -0.02 1.60 16 20 C -0.11 -0.91 4.36 -26.60 -0.12 -1.03 16 21 C 0.11 0.60 6.38 -4.49 -0.03 0.57 16 22 N -0.72 -5.36 5.26 -61.40 -0.32 -5.68 16 23 C 0.53 5.64 7.24 -11.87 -0.09 5.55 16 24 O -0.56 -8.16 17.78 5.55 0.10 -8.06 16 25 C -0.14 -1.37 4.16 -28.10 -0.12 -1.49 16 26 H 0.07 0.63 5.03 -51.93 -0.26 0.36 16 27 H 0.07 0.49 5.69 -51.93 -0.30 0.20 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.76 5.67 -51.92 -0.29 0.47 16 30 H 0.07 0.71 5.49 -51.93 -0.29 0.43 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.39 9.77 7.76 -40.82 -0.32 9.46 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.08 1.39 7.99 -51.93 -0.41 0.98 16 36 H 0.07 1.20 8.00 -51.93 -0.42 0.78 16 37 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 38 H 0.10 0.81 7.86 -51.93 -0.41 0.40 16 39 H 0.07 0.32 6.72 -51.93 -0.35 -0.03 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.40 2.49 8.80 -40.82 -0.36 2.13 16 42 H 0.12 1.16 4.80 -51.93 -0.25 0.91 16 43 H 0.11 1.08 8.09 -51.93 -0.42 0.66 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -32.95 333.04 -7.29 -40.25 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.15 Total: 8.65 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -0.90 Total: 5.07 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.43 Total: -58.50 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.19 Total: -17.22 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.95 -7.29 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969077467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.197 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds