Wall clock time and date at job start Tue Mar 31 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00018 * 2 1 4 4 H 1.48497 * 109.46997 * 269.99478 * 3 2 1 5 5 H 1.48504 * 109.47518 * 29.99708 * 3 2 1 6 6 H 1.48501 * 109.47131 * 149.99979 * 3 2 1 7 7 C 1.38811 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00269 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99812 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.63861 * 31.85704 * 10 9 7 12 12 C 1.55158 * 110.71901 * 268.52710 * 10 9 7 13 13 C 1.55134 * 101.48167 * 205.96929 * 12 10 9 14 14 N 1.47425 * 104.72335 * 37.29497 * 13 12 10 15 15 C 1.34775 * 125.64408 * 155.81849 * 14 13 12 16 16 O 1.21287 * 119.99502 * 179.68735 * 15 14 13 17 17 C 1.50696 * 120.00374 * 359.68907 * 15 14 13 18 18 C 1.53004 * 109.46999 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.29887 * 305.00046 * 18 17 15 20 20 C 1.52921 * 109.30181 * 185.41730 * 18 17 15 21 21 C 1.53336 * 108.67709 * 189.14250 * 20 18 17 22 22 C 1.53073 * 108.42581 * 67.53096 * 21 20 18 23 23 C 1.50175 * 109.89171 * 311.09931 * 22 21 20 24 24 O 1.21276 * 118.25046 * 197.60560 * 23 22 21 25 25 N 1.32957 * 123.39195 * 17.52991 * 23 22 21 26 26 C 1.47019 * 108.70052 * 335.55020 * 14 13 12 27 27 H 0.97002 * 119.99883 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99942 * 0.02562 * 9 7 2 29 29 H 1.09000 * 111.00718 * 324.20696 * 12 10 9 30 30 H 1.08999 * 111.00983 * 88.02652 * 12 10 9 31 31 H 1.09002 * 110.49967 * 278.44932 * 13 12 10 32 32 H 1.08998 * 110.34217 * 156.05940 * 13 12 10 33 33 H 1.08998 * 109.47057 * 60.00342 * 17 15 14 34 34 H 1.08993 * 109.47119 * 300.00069 * 17 15 14 35 35 H 1.09002 * 109.59975 * 308.89755 * 20 18 17 36 36 H 1.08997 * 109.60449 * 69.38232 * 20 18 17 37 37 H 1.08998 * 109.67812 * 187.26136 * 21 20 18 38 38 H 1.08998 * 109.67685 * 307.76219 * 21 20 18 39 39 H 1.08999 * 109.40436 * 71.22797 * 22 21 20 40 40 H 1.09004 * 109.40164 * 190.97625 * 22 21 20 41 41 H 0.97005 * 117.64621 * 177.87455 * 25 23 22 42 42 H 1.09007 * 109.87706 * 120.70718 * 26 14 13 43 43 H 1.08997 * 109.88397 * 241.71331 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5541 -3.2367 -0.5377 12 6 4.4183 -2.9280 1.4518 13 6 5.6842 -3.7994 1.2404 14 7 6.4480 -3.1020 0.1898 15 6 7.7775 -3.1980 -0.0095 16 8 8.3014 -2.5805 -0.9124 17 6 8.6130 -4.0726 0.8893 18 6 10.0772 -4.0033 0.4507 19 1 10.1500 -4.2666 -0.6045 20 6 10.8997 -4.9933 1.2765 21 6 12.3872 -4.7531 0.9923 22 6 12.7736 -3.3852 1.5604 23 6 11.7805 -2.3492 1.1183 24 8 12.0963 -1.1809 1.1967 25 7 10.5744 -2.6469 0.6443 26 6 5.5182 -2.2896 -0.6083 27 1 -0.4850 0.8401 -0.0004 28 1 3.8647 -0.3621 0.0014 29 1 4.6311 -2.0734 2.0941 30 1 3.5989 -3.5228 1.8553 31 1 5.4077 -4.7999 0.9076 32 1 6.2660 -3.8522 2.1606 33 1 8.2618 -5.1023 0.8230 34 1 8.5256 -3.7244 1.9185 35 1 10.7004 -4.8389 2.3370 36 1 10.6338 -6.0126 0.9966 37 1 12.9825 -5.5306 1.4709 38 1 12.5622 -4.7669 -0.0835 39 1 12.7842 -3.4352 2.6492 40 1 13.7660 -3.1115 1.2021 41 1 9.9875 -1.9102 0.4123 42 1 5.8097 -1.2402 -0.5624 43 1 5.5229 -2.6304 -1.6436 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969271505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:47 Heat of formation + Delta-G solvation = -91.047691 kcal Electronic energy + Delta-G solvation = -23916.602649 eV Core-core repulsion = 20381.335264 eV Total energy + Delta-G solvation = -3535.267385 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68860 -40.78341 -38.92469 -37.61474 -36.04637 -34.09133 -33.62776 -32.44987 -31.23173 -29.83990 -28.31581 -25.56370 -24.43675 -23.80356 -23.24302 -21.74238 -20.26447 -20.01866 -19.76563 -18.41756 -17.88944 -17.60199 -17.09268 -16.75961 -16.37654 -16.18182 -15.80343 -15.22862 -15.16602 -14.76881 -14.70685 -14.46764 -14.33672 -14.04029 -13.73297 -13.46661 -13.36379 -13.18224 -12.93102 -12.78530 -12.54653 -12.29419 -12.24367 -12.14106 -11.87948 -11.85249 -11.78558 -11.69325 -11.02355 -11.00248 -10.72972 -10.11833 -9.70766 -9.36382 -8.05918 -5.39903 1.35525 1.37243 1.43358 1.57599 1.61909 1.93005 2.35019 2.44145 3.24028 3.39849 3.51903 3.59359 3.68812 3.76354 3.91187 3.96923 4.08758 4.23105 4.23712 4.28112 4.38302 4.45893 4.57941 4.64416 4.66629 4.74786 4.84761 4.92228 4.97258 5.01192 5.12082 5.14390 5.16383 5.25805 5.39690 5.40296 5.72162 5.74111 6.18168 6.43113 6.54151 7.02085 7.08548 7.20061 7.77814 7.94543 9.14939 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026986 B = 0.003076 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.311972 B = 9099.935863 C = 9754.590601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.057 4.057 3 Si 0.946 3.054 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.259 1.259 7 C -0.227 4.227 8 H 0.069 0.931 9 N -0.747 5.747 10 C 0.167 3.833 11 H 0.074 0.926 12 C -0.150 4.150 13 C 0.106 3.894 14 N -0.613 5.613 15 C 0.514 3.486 16 O -0.589 6.589 17 C -0.139 4.139 18 C 0.149 3.851 19 H 0.074 0.926 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.131 4.131 23 C 0.506 3.494 24 O -0.626 6.626 25 N -0.709 5.709 26 C 0.104 3.896 27 H 0.258 0.742 28 H 0.363 0.637 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.388 0.612 42 H 0.046 0.954 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.462 -18.766 6.520 31.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.249 4.249 3 Si 0.774 3.226 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.184 1.184 7 C -0.358 4.358 8 H 0.087 0.913 9 N -0.390 5.390 10 C 0.058 3.942 11 H 0.092 0.908 12 C -0.190 4.190 13 C -0.016 4.016 14 N -0.346 5.346 15 C 0.305 3.695 16 O -0.471 6.471 17 C -0.179 4.179 18 C 0.045 3.955 19 H 0.092 0.908 20 C -0.163 4.163 21 C -0.157 4.157 22 C -0.170 4.170 23 C 0.295 3.705 24 O -0.511 6.511 25 N -0.358 5.358 26 C -0.020 4.020 27 H 0.067 0.933 28 H 0.196 0.804 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.170 0.830 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.135 0.865 40 H 0.117 0.883 41 H 0.223 0.777 42 H 0.064 0.936 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.884 -18.173 6.123 31.416 hybrid contribution -0.664 2.242 -0.555 2.403 sum 24.220 -15.930 5.567 29.519 Atomic orbital electron populations 1.69849 1.06860 1.26602 1.59612 1.25377 0.95969 1.00766 1.02832 0.85557 0.78547 0.80617 0.77880 1.20920 1.22154 1.18352 1.19024 0.82052 0.93686 1.40995 0.91350 1.42756 1.02780 1.03456 1.89980 1.21387 0.89453 0.88054 0.95347 0.90821 1.23408 0.97772 0.99826 0.98005 1.22635 0.91692 0.96143 0.91099 1.48611 1.06414 1.46384 1.33209 1.21243 0.80757 0.82388 0.85109 1.90714 1.71901 1.48877 1.35563 1.22207 0.92908 1.02760 1.00003 1.21033 0.92122 0.81401 1.00959 0.90785 1.22016 0.93842 0.99630 1.00827 1.21682 0.96706 0.95420 1.01843 1.21713 0.97428 0.93752 1.04110 1.21010 0.83308 0.90340 0.75856 1.90732 1.78271 1.23448 1.58599 1.45862 1.15932 1.10465 1.63516 1.22020 0.89540 0.95094 0.95368 0.93301 0.80411 0.92121 0.89498 0.88267 0.87438 0.83041 0.86336 0.89249 0.86342 0.87332 0.91582 0.86506 0.88271 0.77684 0.93580 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.52 13.97 21.65 0.30 -61.21 16 2 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 3 Si 0.95 45.70 27.74 68.60 1.90 47.60 16 4 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.26 -11.52 6.52 99.48 0.65 -10.87 16 7 C -0.23 -12.33 10.44 84.03 0.88 -11.46 16 8 H 0.07 3.99 8.06 -2.91 -0.02 3.97 16 9 N -0.75 -33.35 5.03 -317.34 -1.60 -34.95 16 10 C 0.17 5.66 3.61 46.18 0.17 5.82 16 11 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 12 C -0.15 -3.94 6.78 32.07 0.22 -3.72 16 13 C 0.11 1.78 6.70 86.93 0.58 2.36 16 14 N -0.61 -14.39 3.32 -811.36 -2.70 -17.09 16 15 C 0.51 11.71 7.49 87.66 0.66 12.37 16 16 O -0.59 -18.85 14.86 -3.05 -0.05 -18.90 16 17 C -0.14 -1.51 4.35 29.85 0.13 -1.38 16 18 C 0.15 1.90 2.66 45.11 0.12 2.02 16 19 H 0.07 1.13 7.95 -2.39 -0.02 1.11 16 20 C -0.13 -0.56 5.30 30.68 0.16 -0.39 16 21 C -0.12 -0.70 6.03 30.73 0.19 -0.52 16 22 C -0.13 -1.61 6.03 29.71 0.18 -1.43 16 23 C 0.51 11.93 7.71 87.77 0.68 12.61 16 24 O -0.63 -21.91 17.78 -3.02 -0.05 -21.96 16 25 N -0.71 -15.26 4.98 -447.15 -2.23 -17.48 16 26 C 0.10 3.24 6.62 86.73 0.57 3.81 16 27 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 28 H 0.36 16.22 5.42 -92.71 -0.50 15.72 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.11 1.12 7.48 -2.39 -0.02 1.10 16 33 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.12 0.97 7.85 -2.39 -0.02 0.95 16 35 H 0.09 0.24 8.10 -2.39 -0.02 0.22 16 36 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.07 0.51 8.13 -2.39 -0.02 0.49 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.39 10.86 6.89 -92.70 -0.64 10.22 16 42 H 0.05 1.62 7.72 -2.38 -0.02 1.61 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -82.14 344.90 0.40 -81.74 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -0.18 Total: 25.02 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 5.00 Total: 17.24 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -6.22 Total: -130.74 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.10 Total: -40.86 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Total: -82.14 0.40 -81.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969271505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.311 kcal (2) G-P(sol) polarization free energy of solvation -82.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds