Wall clock time and date at job start Tue Mar 31 2020 03:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50691 * 110.88821 * 2 1 4 4 O 1.21287 * 119.99964 * 116.06898 * 3 2 1 5 5 N 1.34779 * 120.00388 * 296.07434 * 3 2 1 6 6 C 1.48217 * 119.96587 * 5.43878 * 5 3 2 7 7 C 1.47602 * 110.03808 * 102.55259 * 6 5 3 8 8 C 1.53798 * 111.84227 * 58.43446 * 7 6 5 9 9 N 1.43463 * 107.96147 * 281.54401 * 8 7 6 10 10 C 1.36939 * 118.93534 * 273.63464 * 9 8 7 11 11 H 1.07995 * 120.00717 * 26.30944 * 10 9 8 12 12 C 1.38813 * 119.99583 * 206.31285 * 10 9 8 13 13 N 1.31626 * 120.00201 * 6.59386 * 12 10 9 14 14 Si 1.86801 * 120.00173 * 186.59333 * 12 10 9 15 15 H 1.48499 * 109.46926 * 59.99594 * 14 12 10 16 16 H 1.48499 * 109.47492 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47229 * 300.00068 * 14 12 10 18 18 C 1.48852 * 122.12377 * 93.61039 * 9 8 7 19 19 C 1.43621 * 119.97253 * 185.71974 * 5 3 2 20 20 C 1.54484 * 110.96793 * 123.81518 * 2 1 3 21 21 N 1.46758 * 105.47768 * 92.70101 * 20 2 1 22 22 C 1.34427 * 111.30023 * 17.01552 * 21 20 2 23 23 O 1.21276 * 124.93985 * 179.57400 * 22 21 20 24 24 C 1.51287 * 110.11263 * 359.59259 * 22 21 20 25 25 H 1.09004 * 109.47235 * 302.84064 * 1 2 3 26 26 H 1.08998 * 109.47293 * 62.84184 * 1 2 3 27 27 H 1.09006 * 109.47602 * 182.84511 * 1 2 3 28 28 H 1.08993 * 109.32364 * 222.78478 * 6 5 3 29 29 H 1.09007 * 109.32264 * 342.25255 * 6 5 3 30 30 H 1.09000 * 109.10551 * 297.76070 * 7 6 5 31 31 H 1.08999 * 108.84414 * 178.93591 * 7 6 5 32 32 H 1.08998 * 109.76493 * 161.92590 * 8 7 6 33 33 H 1.09002 * 109.80566 * 41.18305 * 8 7 6 34 34 H 0.96996 * 120.00169 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.48197 * 200.66730 * 18 9 8 36 36 H 1.08994 * 109.49077 * 80.62913 * 18 9 8 37 37 H 1.08999 * 108.87228 * 31.42042 * 19 5 3 38 38 H 1.09000 * 108.87574 * 149.96004 * 19 5 3 39 39 H 1.08996 * 110.24371 * 333.69519 * 20 2 1 40 40 H 1.09007 * 110.31542 * 211.73916 * 20 2 1 41 41 H 0.97001 * 124.35110 * 196.75283 * 21 20 2 42 42 H 1.09002 * 110.48255 * 225.06973 * 24 22 21 43 43 H 1.09001 * 110.48010 * 102.42960 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0672 1.4079 0.0000 4 8 2.7147 1.8099 0.9435 5 7 1.8282 2.2205 -1.0484 6 6 0.9377 1.7717 -2.1449 7 6 -0.3883 2.4062 -2.0112 8 6 -0.2930 3.9411 -2.0328 9 7 0.1444 4.3755 -0.7373 10 6 -0.7894 4.5795 0.2432 11 1 -1.7269 4.0440 0.2162 12 6 -0.5311 5.4749 1.2721 13 7 0.5516 6.2227 1.2375 14 14 -1.7198 5.6185 2.7058 15 1 -1.8293 4.3059 3.3915 16 1 -1.2193 6.6367 3.6639 17 1 -3.0559 6.0267 2.2021 18 6 1.5805 4.6109 -0.4246 19 6 2.4415 3.5179 -1.1050 20 6 2.0828 -0.8028 1.1985 21 7 2.2851 -2.1668 0.6963 22 6 2.2954 -2.1959 -0.6476 23 8 2.4522 -3.1932 -1.3196 24 6 2.0833 -0.8034 -1.1997 25 1 -0.3634 0.5573 0.8634 26 1 -0.3634 0.4691 -0.9143 27 1 -0.3634 -1.0264 0.0510 28 1 1.3775 2.0485 -3.1029 29 1 0.8287 0.6880 -2.1005 30 1 -0.8411 2.0919 -1.0709 31 1 -1.0204 2.0782 -2.8364 32 1 -1.2712 4.3681 -2.2539 33 1 0.4259 4.2559 -2.7892 34 1 0.7319 6.8485 1.9562 35 1 1.7289 4.5710 0.6545 36 1 1.8777 5.5914 -0.7964 37 1 3.4104 3.4719 -0.6077 38 1 2.5941 3.7906 -2.1492 39 1 1.3617 -0.8048 2.0159 40 1 3.0300 -0.3795 1.5329 41 1 2.4008 -2.9467 1.2615 42 1 1.3582 -0.8221 -2.0134 43 1 3.0285 -0.3798 -1.5393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981673892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:12 Heat of formation + Delta-G solvation = -45.593097 kcal Electronic energy + Delta-G solvation = -26091.655238 eV Core-core repulsion = 22558.358911 eV Total energy + Delta-G solvation = -3533.296326 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.34266 -40.52857 -38.62492 -37.53237 -36.17968 -34.14501 -33.78584 -32.36173 -29.52608 -29.35724 -27.54433 -26.86306 -25.65243 -24.30272 -22.33368 -21.80036 -21.29914 -19.50629 -18.71272 -18.47591 -17.61789 -17.44082 -17.10913 -16.48259 -16.04957 -15.92918 -15.50033 -15.34829 -15.25645 -14.81990 -14.62856 -14.38881 -14.07495 -13.91470 -13.67338 -13.39461 -13.21493 -13.10006 -12.98215 -12.76384 -12.47274 -12.29355 -12.18771 -12.03380 -11.90340 -11.66432 -11.57174 -11.31236 -11.20165 -10.59364 -10.45095 -10.16096 -9.47965 -8.57558 -7.78509 -5.25845 1.44151 1.46190 1.47664 1.51647 1.64624 2.11169 2.38428 2.53331 3.08343 3.23456 3.36505 3.57801 3.73682 3.78657 3.88839 4.08444 4.35549 4.39347 4.47787 4.51999 4.57154 4.60869 4.69102 4.74918 4.81295 4.83996 4.89473 4.94292 5.00924 5.07430 5.25344 5.32904 5.40952 5.62557 5.66650 5.70608 5.83480 5.92205 5.95319 6.46414 6.56467 7.17135 7.23099 7.29377 8.01138 8.41785 9.24771 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.005381 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.800847 B = 5202.344034 C = 5599.946500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C 0.523 3.477 4 O -0.583 6.583 5 N -0.578 5.578 6 C 0.101 3.899 7 C -0.169 4.169 8 C 0.153 3.847 9 N -0.603 5.603 10 C -0.249 4.249 11 H 0.066 0.934 12 C -0.053 4.053 13 N -0.939 5.939 14 Si 0.957 3.043 15 H -0.283 1.283 16 H -0.300 1.300 17 H -0.274 1.274 18 C 0.179 3.821 19 C 0.103 3.897 20 C 0.122 3.878 21 N -0.714 5.714 22 C 0.524 3.476 23 O -0.574 6.574 24 C -0.139 4.139 25 H 0.050 0.950 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.244 0.756 35 H 0.037 0.963 36 H 0.008 0.992 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.421 0.579 42 H 0.139 0.861 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.742 -14.144 -7.230 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C 0.311 3.689 4 O -0.464 6.464 5 N -0.307 5.307 6 C -0.019 4.019 7 C -0.209 4.209 8 C 0.026 3.974 9 N -0.326 5.326 10 C -0.380 4.380 11 H 0.084 0.916 12 C -0.248 4.248 13 N -0.587 5.587 14 Si 0.786 3.214 15 H -0.210 1.210 16 H -0.226 1.226 17 H -0.199 1.199 18 C 0.053 3.947 19 C -0.023 4.023 20 C -0.003 4.003 21 N -0.369 5.369 22 C 0.311 3.689 23 O -0.454 6.454 24 C -0.178 4.178 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.129 0.871 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.026 0.974 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.261 0.739 42 H 0.156 0.844 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.197 -14.200 -7.083 15.913 hybrid contribution -0.378 0.659 1.698 1.860 sum 0.819 -13.540 -5.385 14.595 Atomic orbital electron populations 1.22217 0.89820 1.03852 1.04549 1.21493 0.98845 0.91124 0.97192 1.20473 0.79326 0.87480 0.81584 1.90682 1.43171 1.77322 1.35206 1.47407 1.46891 1.14687 1.21756 1.21578 0.89897 1.00942 0.89513 1.21999 0.97716 0.98492 1.02732 1.20506 0.97642 0.92962 0.86271 1.43852 1.01850 1.78756 1.08158 1.19402 0.98483 1.16595 1.03484 0.91608 1.25730 0.99219 0.97210 1.02594 1.70156 1.28260 1.26692 1.33547 0.85492 0.79209 0.76859 0.79791 1.20979 1.22639 1.19945 1.21550 0.82471 0.92507 0.98198 1.21696 0.95795 0.83484 1.01324 1.21975 1.02441 0.80216 0.95664 1.46161 1.72754 1.10646 1.07335 1.20959 0.74309 0.90656 0.82965 1.90742 1.52505 1.38536 1.63664 1.22641 1.05332 0.91660 0.98194 0.93039 0.88766 0.89544 0.88571 0.87115 0.92554 0.88431 0.94512 0.93213 0.94709 0.94442 0.97415 0.92261 0.89448 0.88357 0.90449 0.73876 0.84372 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 7.68 71.98 0.55 -2.55 16 2 C -0.08 -1.89 0.60 -51.87 -0.03 -1.93 16 3 C 0.52 16.97 6.39 87.65 0.56 17.53 16 4 O -0.58 -24.48 15.20 -3.05 -0.05 -24.52 16 5 N -0.58 -17.55 2.45 -830.40 -2.03 -19.58 16 6 C 0.10 2.15 4.78 84.36 0.40 2.56 16 7 C -0.17 -4.32 4.92 29.17 0.14 -4.17 16 8 C 0.15 5.35 5.63 87.21 0.49 5.84 16 9 N -0.60 -27.92 2.54 -698.09 -1.78 -29.70 16 10 C -0.25 -13.12 9.30 84.03 0.78 -12.34 16 11 H 0.07 3.36 7.84 -2.91 -0.02 3.34 16 12 C -0.05 -2.97 5.13 84.86 0.44 -2.53 16 13 N -0.94 -56.03 10.52 21.65 0.23 -55.80 16 14 Si 0.96 45.52 29.56 68.60 2.03 47.54 16 15 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 C 0.18 8.51 5.16 86.57 0.45 8.95 16 19 C 0.10 3.66 5.21 87.55 0.46 4.11 16 20 C 0.12 2.62 6.64 86.83 0.58 3.20 16 21 N -0.71 -13.47 6.24 -459.79 -2.87 -16.34 16 22 C 0.52 11.87 8.43 87.90 0.74 12.61 16 23 O -0.57 -17.19 18.03 -3.02 -0.05 -17.24 16 24 C -0.14 -2.58 4.78 30.59 0.15 -2.44 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.85 3.27 -2.39 -0.01 1.84 16 27 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.10 1.60 8.05 -2.39 -0.02 1.58 16 29 H 0.11 1.76 2.64 -2.38 -0.01 1.75 16 30 H 0.06 1.71 6.00 -2.39 -0.01 1.70 16 31 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.34 8.02 -2.39 -0.02 1.32 16 33 H 0.05 1.58 7.59 -2.39 -0.02 1.56 16 34 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.04 2.16 6.35 -2.39 -0.02 2.14 16 36 H 0.01 0.41 8.00 -2.39 -0.02 0.39 16 37 H 0.06 2.23 7.46 -2.39 -0.02 2.21 16 38 H 0.09 2.56 7.72 -2.39 -0.02 2.54 16 39 H 0.10 1.93 7.91 -2.39 -0.02 1.91 16 40 H 0.08 1.95 7.09 -2.38 -0.02 1.93 16 41 H 0.42 6.33 8.96 -92.71 -0.83 5.50 16 42 H 0.14 1.90 6.18 -2.39 -0.01 1.89 16 43 H 0.11 2.10 7.89 -2.39 -0.02 2.08 16 Total: -1.00 -74.47 324.21 1.39 -73.07 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.21 Total: 13.73 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 5.70 Total: 28.84 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -6.45 Total: -121.42 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -0.10 Total: -41.76 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.47 1.39 -73.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981673892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.481 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds