Wall clock time and date at job start Tue Mar 31 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00069 * 2 1 4 4 H 1.48493 * 109.47343 * 85.74151 * 3 2 1 5 5 H 1.48498 * 109.46887 * 205.73887 * 3 2 1 6 6 H 1.48498 * 109.46835 * 325.73780 * 3 2 1 7 7 C 1.38814 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00375 * 22.86198 * 7 2 1 9 9 N 1.36942 * 119.99642 * 202.85660 * 7 2 1 10 10 C 1.43459 * 118.93794 * 204.34509 * 9 7 2 11 11 C 1.53243 * 108.26405 * 273.78217 * 10 9 7 12 12 C 1.47144 * 111.81027 * 281.68247 * 11 10 9 13 13 N 1.48210 * 110.34946 * 58.22435 * 12 11 10 14 14 C 1.34776 * 119.96914 * 102.46247 * 13 12 11 15 15 O 1.21276 * 120.00435 * 0.02622 * 14 13 12 16 16 C 1.50706 * 119.99746 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.46892 * 180.02562 * 16 14 13 18 18 H 1.09002 * 110.21687 * 304.51743 * 17 16 14 19 19 C 1.54482 * 110.24137 * 182.50061 * 17 16 14 20 20 C 1.54624 * 101.76401 * 266.41018 * 19 17 16 21 21 C 1.51280 * 104.19542 * 335.20795 * 20 19 17 22 22 O 1.21287 * 124.93975 * 196.22837 * 21 20 19 23 23 N 1.34408 * 110.12064 * 16.24881 * 21 20 19 24 24 C 1.43623 * 120.05642 * 282.48900 * 13 12 11 25 25 C 1.48857 * 118.93954 * 24.61671 * 9 7 2 26 26 H 0.96998 * 120.00321 * 185.17938 * 1 2 3 27 27 H 1.08996 * 109.76436 * 33.24648 * 10 9 7 28 28 H 1.09000 * 109.76261 * 154.01982 * 10 9 7 29 29 H 1.08996 * 109.07881 * 161.04554 * 11 10 9 30 30 H 1.09000 * 108.90455 * 42.19632 * 11 10 9 31 31 H 1.08999 * 109.32307 * 297.95272 * 12 11 10 32 32 H 1.09003 * 109.32260 * 178.49796 * 12 11 10 33 33 H 1.09001 * 109.46816 * 300.00165 * 16 14 13 34 34 H 1.08994 * 109.47144 * 59.99635 * 16 14 13 35 35 H 1.08996 * 110.97270 * 24.53202 * 19 17 16 36 36 H 1.09000 * 110.96602 * 148.29553 * 19 17 16 37 37 H 1.08999 * 110.49057 * 216.52062 * 20 19 17 38 38 H 1.09003 * 110.59799 * 93.94180 * 20 19 17 39 39 H 0.97000 * 124.35332 * 180.38666 * 23 21 20 40 40 H 1.09002 * 108.86966 * 329.88383 * 24 13 12 41 41 H 1.08996 * 108.79177 * 211.39120 * 24 13 12 42 42 H 1.09003 * 109.47884 * 260.59999 * 25 9 7 43 43 H 1.08995 * 109.48410 * 20.62085 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4077 2.0984 1.3961 5 1 3.5899 1.4158 -0.6080 6 1 1.4956 2.6249 -0.7882 7 6 2.0102 -1.2022 0.0005 8 1 1.5339 -2.1009 -0.3624 9 7 3.2990 -1.2486 0.4612 10 6 4.1652 -2.2932 -0.0038 11 6 3.9594 -3.5212 0.8896 12 6 4.6618 -3.3856 2.1754 13 7 4.1943 -2.1762 2.8932 14 6 3.3268 -2.2946 3.9178 15 8 2.9294 -3.3904 4.2525 16 6 2.8505 -1.0651 4.6477 17 6 1.8809 -1.4748 5.7581 18 1 1.0614 -2.0628 5.3446 19 6 1.3328 -0.2227 6.4780 20 6 2.3174 -0.0834 7.6620 21 6 2.8493 -1.4845 7.8689 22 8 3.4289 -1.8677 8.8631 23 7 2.5865 -2.2427 6.7907 24 6 4.6644 -0.8781 2.4974 25 6 3.7540 -0.2169 1.4331 26 1 -0.4850 -0.8366 0.0758 27 1 3.9161 -2.5473 -1.0341 28 1 5.2030 -1.9651 0.0551 29 1 4.3331 -4.4048 0.3723 30 1 2.8932 -3.6453 1.0790 31 1 5.7337 -3.3058 1.9942 32 1 4.4669 -4.2663 2.7875 33 1 3.7049 -0.5480 5.0844 34 1 2.3428 -0.4011 3.9482 35 1 1.3774 0.6515 5.8285 36 1 0.3163 -0.3910 6.8337 37 1 1.7950 0.2621 8.5541 38 1 3.1286 0.5989 7.4079 39 1 2.8319 -3.1773 6.7058 40 1 5.6702 -0.9768 2.0889 41 1 4.7029 -0.2354 3.3768 42 1 4.3130 0.5568 0.9067 43 1 2.8880 0.2292 1.9219 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982190408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:04 Heat of formation + Delta-G solvation = -68.412466 kcal Electronic energy + Delta-G solvation = -25560.597091 eV Core-core repulsion = 22026.311243 eV Total energy + Delta-G solvation = -3534.285848 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.78747 -40.81758 -38.82705 -37.58424 -36.01860 -34.56459 -33.38756 -32.20494 -31.56752 -29.27734 -27.68728 -26.51307 -24.90063 -23.73983 -22.10456 -21.58264 -21.40405 -20.03661 -19.29519 -18.59513 -17.89455 -17.59381 -17.04799 -16.65152 -16.42878 -16.09582 -15.66784 -15.51323 -15.05244 -14.81067 -14.72780 -14.42960 -14.22368 -13.93657 -13.85507 -13.62058 -13.44512 -13.31679 -12.93555 -12.80223 -12.55413 -12.20773 -11.97819 -11.92641 -11.83730 -11.57376 -11.45738 -11.24915 -10.96945 -10.78273 -10.57057 -10.18414 -9.58907 -8.90597 -8.53029 -5.43612 1.46890 1.55053 1.62742 1.66949 1.80629 2.13816 2.41439 2.62726 3.10704 3.33137 3.46487 3.55318 3.71940 3.79409 4.05434 4.09678 4.11504 4.18325 4.22708 4.37323 4.45353 4.48428 4.60997 4.63629 4.71005 4.79020 4.82131 4.90577 4.93522 4.94849 5.00391 5.09967 5.15101 5.18124 5.40201 5.69295 5.80131 5.83466 6.09293 6.29921 6.50638 6.97857 7.19099 7.23655 7.73332 8.07972 8.89689 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.005706 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.159828 B = 4905.941854 C = 5836.090770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.067 4.067 3 Si 1.100 2.900 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.319 1.319 7 C -0.331 4.331 8 H 0.014 0.986 9 N -0.611 5.611 10 C 0.159 3.841 11 C -0.154 4.154 12 C 0.128 3.872 13 N -0.591 5.591 14 C 0.510 3.490 15 O -0.590 6.590 16 C -0.149 4.149 17 C 0.144 3.856 18 H 0.075 0.925 19 C -0.119 4.119 20 C -0.145 4.145 21 C 0.507 3.493 22 O -0.594 6.594 23 N -0.715 5.715 24 C 0.094 3.906 25 C 0.091 3.909 26 H 0.243 0.757 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.014 0.986 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.405 0.595 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.058 0.942 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.034 3.436 9.607 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.925 3.075 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.249 1.249 7 C -0.461 4.461 8 H 0.032 0.968 9 N -0.335 5.335 10 C 0.032 3.968 11 C -0.195 4.195 12 C 0.006 3.994 13 N -0.321 5.321 14 C 0.300 3.700 15 O -0.472 6.472 16 C -0.189 4.189 17 C 0.038 3.962 18 H 0.094 0.906 19 C -0.156 4.156 20 C -0.184 4.184 21 C 0.296 3.704 22 O -0.476 6.476 23 N -0.367 5.367 24 C -0.031 4.031 25 C -0.034 4.034 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.033 0.967 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.243 0.757 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.076 0.924 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.969 4.392 10.202 15.611 hybrid contribution -0.699 -2.968 -0.733 3.136 sum 10.269 1.424 9.470 14.042 Atomic orbital electron populations 1.70978 1.07865 1.28280 1.52640 1.27444 0.96177 1.04595 0.97881 0.83467 0.74142 0.71796 0.78126 1.17875 1.18810 1.24870 1.19990 0.90449 0.94061 1.41623 0.96824 1.43986 1.09465 1.31656 1.48352 1.20352 0.94197 0.87463 0.94835 1.21567 0.99143 1.00847 0.97927 1.20612 0.99084 0.87558 0.92139 1.47536 1.44921 1.08148 1.31479 1.21125 0.77469 0.91253 0.80113 1.90592 1.57865 1.30093 1.68610 1.22277 1.02172 0.96191 0.98295 1.21449 0.93428 0.93959 0.87377 0.90645 1.22728 0.99560 0.96905 0.96431 1.22394 1.01481 0.92992 1.01560 1.21709 0.77275 0.90076 0.81345 1.90705 1.45385 1.79280 1.32198 1.46497 1.58706 1.14224 1.17255 1.21957 0.98367 0.83775 0.99033 1.22822 0.97935 0.91793 0.90838 0.94846 0.94986 0.90709 0.90145 0.96659 0.88054 0.91541 0.85709 0.87007 0.86388 0.88635 0.86497 0.85426 0.75657 0.88075 0.87303 0.92437 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.50 13.70 21.65 0.30 -58.20 16 2 C -0.07 -3.70 5.14 84.86 0.44 -3.26 16 3 Si 1.10 47.08 24.44 68.60 1.68 48.76 16 4 H -0.25 -9.09 6.75 99.48 0.67 -8.42 16 5 H -0.26 -10.16 6.41 99.48 0.64 -9.52 16 6 H -0.32 -14.65 7.11 99.48 0.71 -13.95 16 7 C -0.33 -17.95 9.55 84.03 0.80 -17.15 16 8 H 0.01 0.87 8.06 -2.91 -0.02 0.84 16 9 N -0.61 -25.73 2.34 -699.20 -1.64 -27.37 16 10 C 0.16 5.60 5.59 87.02 0.49 6.08 16 11 C -0.15 -5.14 5.63 28.85 0.16 -4.98 16 12 C 0.13 3.61 5.69 84.23 0.48 4.09 16 13 N -0.59 -17.16 2.46 -831.20 -2.04 -19.20 16 14 C 0.51 16.16 7.56 87.66 0.66 16.82 16 15 O -0.59 -22.60 14.39 -3.02 -0.04 -22.64 16 16 C -0.15 -3.49 3.86 29.85 0.12 -3.37 16 17 C 0.14 3.30 3.02 45.44 0.14 3.44 16 18 H 0.08 2.08 7.99 -2.39 -0.02 2.06 16 19 C -0.12 -1.81 6.70 31.65 0.21 -1.60 16 20 C -0.14 -2.25 6.86 30.59 0.21 -2.04 16 21 C 0.51 13.11 8.43 87.90 0.74 13.85 16 22 O -0.59 -20.64 18.03 -3.05 -0.06 -20.70 16 23 N -0.71 -18.36 5.46 -439.44 -2.40 -20.76 16 24 C 0.09 2.22 5.05 87.55 0.44 2.66 16 25 C 0.09 3.03 4.52 86.56 0.39 3.42 16 26 H 0.24 15.39 8.73 -92.71 -0.81 14.58 16 27 H 0.03 1.23 8.02 -2.39 -0.02 1.21 16 28 H 0.07 2.08 7.58 -2.39 -0.02 2.07 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.01 0.65 7.90 -2.39 -0.02 0.63 16 31 H 0.10 2.11 8.05 -2.39 -0.02 2.09 16 32 H 0.07 2.07 7.13 -2.39 -0.02 2.05 16 33 H 0.12 2.12 7.37 -2.39 -0.02 2.10 16 34 H 0.11 2.74 7.31 -2.39 -0.02 2.72 16 35 H 0.12 1.37 7.89 -2.39 -0.02 1.35 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.41 11.76 8.19 -92.71 -0.76 11.00 16 40 H 0.10 1.86 7.73 -2.39 -0.02 1.84 16 41 H 0.11 1.84 6.37 -2.39 -0.02 1.82 16 42 H 0.06 1.77 5.80 -2.39 -0.01 1.76 16 43 H 0.06 2.04 4.73 -2.39 -0.01 2.02 16 Total: -1.00 -78.59 330.10 1.19 -77.39 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.12 Total: 24.75 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 5.28 Total: 17.98 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -5.78 Total: -125.54 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.10 Total: -43.34 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.68 Total: 48.76 kcal Total: -78.59 1.19 -77.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982190408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.981 kcal (2) G-P(sol) polarization free energy of solvation -78.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds