Wall clock time and date at job start Tue Mar 31 2020 03:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00147 * 2 1 4 4 H 1.48505 * 109.46911 * 90.00658 * 3 2 1 5 5 H 1.48501 * 109.47052 * 210.00552 * 3 2 1 6 6 H 1.48496 * 109.47039 * 330.00930 * 3 2 1 7 7 C 1.38811 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99872 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00393 * 179.97438 * 7 2 1 10 10 C 1.46503 * 120.00009 * 179.97438 * 9 7 2 11 11 C 1.53037 * 109.46270 * 275.06879 * 10 9 7 12 12 C 1.53189 * 109.31332 * 178.61554 * 11 10 9 13 13 N 1.46923 * 108.77506 * 54.63615 * 12 11 10 14 14 C 1.34780 * 120.62926 * 126.37068 * 13 12 11 15 15 O 1.21278 * 119.99992 * 175.30915 * 14 13 12 16 16 C 1.50697 * 120.00143 * 355.30578 * 14 13 12 17 17 H 1.09008 * 109.66874 * 35.80980 * 16 14 13 18 18 C 1.53343 * 109.67356 * 275.31454 * 16 14 13 19 19 C 1.52925 * 108.67378 * 172.73339 * 18 16 14 20 20 N 1.45762 * 110.48586 * 50.75221 * 19 18 16 21 21 C 1.33348 * 124.10583 * 340.94654 * 20 19 18 22 22 O 1.21283 * 118.24675 * 182.22538 * 21 20 19 23 23 C 1.50175 * 123.51028 * 2.17805 * 21 20 19 24 24 C 1.46924 * 118.74075 * 306.38952 * 13 12 11 25 25 C 1.53042 * 109.45843 * 154.99994 * 10 9 7 26 26 H 0.97002 * 120.00190 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00212 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.46050 * 35.03166 * 10 9 7 29 29 H 1.08998 * 109.49685 * 298.57001 * 11 10 9 30 30 H 1.09004 * 109.49568 * 58.66255 * 11 10 9 31 31 H 1.09000 * 109.58834 * 294.85025 * 12 11 10 32 32 H 1.09000 * 109.70143 * 174.49350 * 12 11 10 33 33 H 1.08995 * 109.60248 * 292.48887 * 18 16 14 34 34 H 1.08997 * 109.60537 * 52.81377 * 18 16 14 35 35 H 1.09005 * 109.30204 * 171.05807 * 19 18 16 36 36 H 1.08994 * 109.30546 * 290.44200 * 19 18 16 37 37 H 0.97000 * 117.94308 * 160.92484 * 20 19 18 38 38 H 1.09001 * 109.41157 * 222.31396 * 23 21 20 39 39 H 1.09002 * 109.38244 * 102.58310 * 23 21 20 40 40 H 1.09003 * 109.58831 * 293.82319 * 24 13 12 41 41 H 1.09003 * 109.58997 * 173.39595 * 24 13 12 42 42 H 1.08997 * 109.50025 * 301.34075 * 25 10 9 43 43 H 1.09011 * 109.49607 * 61.43683 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5477 1.4402 -0.7002 6 1 1.4476 2.6527 -0.6998 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 6 4.2571 -2.9759 1.4363 12 6 4.9930 -4.3195 1.4294 13 7 6.2667 -4.1573 0.7153 14 6 7.4292 -4.5180 1.2942 15 8 8.4641 -4.4592 0.6645 16 6 7.4431 -4.9944 2.7238 17 1 6.5400 -5.5697 2.9277 18 6 7.5115 -3.7888 3.6690 19 6 7.3415 -4.2831 5.1061 20 7 8.2587 -5.3826 5.3793 21 6 8.8489 -6.1161 4.4350 22 8 9.5624 -7.0332 4.7828 23 6 8.6768 -5.8681 2.9639 24 6 6.2493 -3.5942 -0.6416 25 6 5.4993 -2.2587 -0.6115 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 -0.0007 28 1 3.5645 -3.2063 -0.5906 29 1 4.8260 -2.2525 2.0204 30 1 3.2690 -3.1046 1.8782 31 1 4.3830 -5.0676 0.9231 32 1 5.1863 -4.6379 2.4538 33 1 8.4780 -3.2960 3.5637 34 1 6.7145 -3.0867 3.4245 35 1 7.5458 -3.4638 5.7955 36 1 6.3166 -4.6246 5.2509 37 1 8.4520 -5.5936 6.3061 38 1 8.5522 -6.8202 2.4482 39 1 9.5606 -5.3610 2.5767 40 1 5.7417 -4.2831 -1.3167 41 1 7.2716 -3.4315 -0.9829 42 1 5.3954 -1.8768 -1.6271 43 1 6.0565 -1.5420 -0.0080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991013279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:57 Heat of formation + Delta-G solvation = -89.267157 kcal Electronic energy + Delta-G solvation = -24524.400591 eV Core-core repulsion = 20989.210415 eV Total energy + Delta-G solvation = -3535.190175 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89828 -40.70883 -38.85167 -37.38185 -36.23394 -34.34253 -33.77161 -32.01087 -31.46160 -30.66173 -27.22244 -25.84372 -24.34258 -24.26684 -23.45719 -21.73250 -20.48962 -19.96039 -19.35380 -18.34804 -18.31681 -17.19888 -16.90156 -16.67856 -16.21691 -16.13018 -15.81011 -15.28689 -15.17837 -14.95799 -14.82689 -14.65063 -14.48871 -14.23272 -13.92316 -13.51772 -13.25097 -13.03676 -12.90473 -12.76153 -12.58728 -12.20913 -12.12414 -12.03917 -12.01314 -11.90386 -11.74907 -11.29356 -11.22900 -10.91904 -10.61022 -10.07462 -9.67573 -9.27191 -7.98733 -5.31411 1.40751 1.42707 1.49621 1.50555 1.59035 1.95546 2.32911 2.51363 3.28741 3.33547 3.53162 3.60163 3.67498 3.71364 3.86021 4.04084 4.08600 4.21524 4.26177 4.37228 4.41679 4.44053 4.60069 4.66107 4.76552 4.78344 4.81894 4.86106 4.87637 4.92701 5.06474 5.10430 5.15425 5.31316 5.51729 5.65063 5.82138 5.82552 6.25571 6.28741 6.41081 7.11356 7.12124 7.16969 7.89175 8.06732 9.22730 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024730 B = 0.003510 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.973444 B = 7975.093796 C = 8479.911279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.064 4.064 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.254 1.254 6 H -0.302 1.302 7 C -0.222 4.222 8 H 0.061 0.939 9 N -0.753 5.753 10 C 0.173 3.827 11 C -0.141 4.141 12 C 0.110 3.890 13 N -0.603 5.603 14 C 0.522 3.478 15 O -0.581 6.581 16 C -0.105 4.105 17 H 0.127 0.873 18 C -0.126 4.126 19 C 0.111 3.889 20 N -0.709 5.709 21 C 0.524 3.476 22 O -0.607 6.607 23 C -0.115 4.115 24 C 0.120 3.880 25 C -0.130 4.130 26 H 0.256 0.744 27 H 0.363 0.637 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.407 0.593 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.269 -8.812 9.359 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.779 3.221 4 H -0.205 1.205 5 H -0.179 1.179 6 H -0.229 1.229 7 C -0.353 4.353 8 H 0.079 0.921 9 N -0.395 5.395 10 C 0.066 3.934 11 C -0.181 4.181 12 C -0.012 4.012 13 N -0.335 5.335 14 C 0.311 3.689 15 O -0.461 6.461 16 C -0.126 4.126 17 H 0.145 0.855 18 C -0.165 4.165 19 C -0.012 4.012 20 N -0.360 5.360 21 C 0.312 3.688 22 O -0.490 6.490 23 C -0.155 4.155 24 C -0.003 4.003 25 C -0.169 4.169 26 H 0.065 0.935 27 H 0.196 0.804 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.243 0.757 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.876 -9.251 8.944 20.436 hybrid contribution -0.086 1.254 -0.015 1.257 sum 15.790 -7.997 8.929 19.824 Atomic orbital electron populations 1.69871 1.07121 1.26482 1.60141 1.25440 0.95967 1.01032 1.03139 0.85473 0.78569 0.80086 0.77992 1.20459 1.17851 1.22941 1.19023 0.82567 0.93326 1.40381 0.92098 1.42837 1.02424 1.03974 1.90282 1.20423 0.90912 0.87170 0.94925 1.22424 1.00372 0.96676 0.98673 1.21996 0.83145 0.97321 0.98778 1.48215 1.07015 1.61692 1.16543 1.20788 0.82541 0.76548 0.89050 1.90679 1.33331 1.56093 1.65965 1.21479 1.00824 0.98848 0.91421 0.85526 1.21891 1.04912 0.96235 0.93415 1.21630 0.94108 0.89271 0.96182 1.45500 1.46581 1.34071 1.09816 1.20194 0.78504 0.80718 0.89385 1.90750 1.41692 1.33287 1.83255 1.21447 0.99985 1.02395 0.91669 1.21511 1.01495 0.93959 0.83297 1.22106 0.95482 0.97508 1.01849 0.93530 0.80393 0.93690 0.91655 0.91672 0.90241 0.86663 0.90894 0.87736 0.87457 0.88693 0.75682 0.88085 0.88008 0.90373 0.89683 0.90746 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -60.90 13.97 21.65 0.30 -60.60 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.95 43.45 27.74 68.60 1.90 45.35 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.25 -10.45 6.52 99.48 0.65 -9.80 16 6 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 7 C -0.22 -11.69 10.41 84.03 0.87 -10.82 16 8 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 9 N -0.75 -31.52 4.92 -322.81 -1.59 -33.11 16 10 C 0.17 5.48 2.73 45.02 0.12 5.60 16 11 C -0.14 -3.51 5.66 30.67 0.17 -3.34 16 12 C 0.11 1.88 6.27 86.36 0.54 2.42 16 13 N -0.60 -12.12 2.97 -818.92 -2.43 -14.55 16 14 C 0.52 11.00 6.83 87.66 0.60 11.60 16 15 O -0.58 -16.75 15.28 -3.02 -0.05 -16.80 16 16 C -0.10 -1.48 1.74 -11.40 -0.02 -1.50 16 17 H 0.13 1.22 6.31 -2.38 -0.02 1.20 16 18 C -0.13 -1.33 5.16 30.68 0.16 -1.17 16 19 C 0.11 0.72 7.17 86.49 0.62 1.34 16 20 N -0.71 -8.59 5.45 -467.30 -2.55 -11.13 16 21 C 0.52 10.36 7.71 87.71 0.68 11.04 16 22 O -0.61 -17.70 17.78 -3.04 -0.05 -17.75 16 23 C -0.11 -2.08 5.09 29.71 0.15 -1.93 16 24 C 0.12 2.70 6.42 86.36 0.55 3.26 16 25 C -0.13 -3.38 5.55 30.67 0.17 -3.21 16 26 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.36 14.88 5.66 -92.71 -0.52 14.35 16 28 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.12 1.21 5.35 -2.39 -0.01 1.20 16 33 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 34 H 0.10 0.99 8.09 -2.39 -0.02 0.97 16 35 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 36 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.41 4.17 8.80 -92.71 -0.82 3.35 16 38 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.10 2.15 7.45 -2.39 -0.02 2.14 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 2.05 7.03 -2.39 -0.02 2.03 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -75.85 339.63 0.26 -75.59 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -0.37 Total: 22.86 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 5.09 Total: 10.14 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -6.27 Total: -119.39 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.10 Total: -34.55 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.90 Total: 45.35 kcal Total: -75.85 0.26 -75.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991013279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.674 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds