Wall clock time and date at job start Tue Mar 31 2020 03:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 110.78264 * 2 1 4 4 C 1.54324 * 110.71778 * 123.24015 * 2 1 3 5 5 N 1.47017 * 107.27397 * 140.55674 * 4 2 1 6 6 C 1.34774 * 125.65143 * 181.02311 * 5 4 2 7 7 O 1.21279 * 119.99866 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00174 * 179.97438 * 6 5 4 9 9 H 1.09004 * 115.55272 * 50.79390 * 8 6 5 10 10 C 1.53083 * 117.53602 * 196.50587 * 8 6 5 11 11 C 1.52997 * 59.98229 * 107.46708 * 10 8 6 12 12 H 1.09000 * 117.49714 * 107.50534 * 11 10 8 13 13 C 1.50697 * 117.49938 * 252.49912 * 11 10 8 14 14 N 1.34774 * 119.99815 * 157.85952 * 13 11 10 15 15 O 1.21279 * 119.99993 * 338.12441 * 13 11 10 16 16 C 1.47426 * 108.70089 * 1.28251 * 5 4 2 17 17 C 1.55128 * 104.72261 * 335.55647 * 16 5 4 18 18 H 1.09003 * 110.90492 * 155.27772 * 17 16 5 19 19 N 1.46503 * 111.22235 * 279.17526 * 17 16 5 20 20 C 1.36946 * 119.99772 * 267.20388 * 19 17 16 21 21 H 1.08001 * 119.99734 * 0.02562 * 20 19 17 22 22 C 1.38805 * 119.99466 * 180.02562 * 20 19 17 23 23 N 1.31614 * 120.00629 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99596 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47151 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46923 * 120.00262 * 24 22 20 27 27 H 1.48501 * 109.47636 * 239.99959 * 24 22 20 28 28 H 1.08997 * 109.47731 * 298.21776 * 1 2 3 29 29 H 1.09005 * 109.47336 * 58.21544 * 1 2 3 30 30 H 1.09002 * 109.47344 * 178.21647 * 1 2 3 31 31 H 1.08992 * 109.47109 * 181.78123 * 3 2 1 32 32 H 1.09002 * 109.46981 * 301.78831 * 3 2 1 33 33 H 1.08999 * 109.46732 * 61.78154 * 3 2 1 34 34 H 1.09003 * 109.88381 * 21.13206 * 4 2 1 35 35 H 1.09002 * 110.01027 * 260.04853 * 4 2 1 36 36 H 1.08999 * 117.50821 * 359.97438 * 10 8 6 37 37 H 1.09002 * 117.49306 * 214.95958 * 10 8 6 38 38 H 0.97001 * 120.00477 * 359.97438 * 14 13 11 39 39 H 0.97006 * 119.99777 * 179.97438 * 14 13 11 40 40 H 1.09000 * 110.36409 * 94.48291 * 16 5 4 41 41 H 1.09002 * 110.36654 * 216.80174 * 16 5 4 42 42 H 0.96996 * 119.99973 * 87.21232 * 19 17 16 43 43 H 0.97001 * 120.00455 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0759 -0.7912 1.2073 5 7 3.2444 -1.5508 0.7391 6 6 3.9921 -2.3836 1.4899 7 8 3.7195 -2.5558 2.6590 8 6 5.1669 -3.1010 0.8766 9 1 5.8697 -2.4713 0.3309 10 6 5.7366 -4.3028 1.6346 11 6 4.9330 -4.5186 0.3506 12 1 5.4814 -4.8214 -0.5414 13 6 3.5454 -5.0908 0.4860 14 7 2.6387 -4.8982 -0.4923 15 8 3.2432 -5.7204 1.4775 16 6 3.4665 -1.2457 -0.6860 17 6 2.0789 -0.7955 -1.2137 18 1 2.1850 -0.1520 -2.0871 19 7 1.2266 -1.9484 -1.5149 20 6 1.2017 -2.4693 -2.7812 21 1 1.8108 -2.0304 -3.5576 22 6 0.3938 -3.5612 -3.0666 23 7 -0.3489 -4.0957 -2.1205 24 14 0.3594 -4.2714 -4.7941 25 1 1.2768 -3.4954 -5.6666 26 1 0.7962 -5.6901 -4.7548 27 1 -1.0218 -4.1935 -5.3340 28 1 -0.3634 0.4859 0.9055 29 1 -0.3634 0.5413 -0.8736 30 1 -0.3634 -1.0272 -0.0320 31 1 3.1620 1.4056 -0.0319 32 1 1.6956 1.9622 -0.8735 33 1 1.7474 1.9425 0.9055 34 1 1.3128 -1.4758 1.5776 35 1 2.3734 -0.1044 1.9997 36 1 5.2617 -4.5745 2.5774 37 1 6.8137 -4.4632 1.5872 38 1 2.8791 -4.3910 -1.2835 39 1 1.7457 -5.2668 -0.4053 40 1 4.1946 -0.4416 -0.7928 41 1 3.8031 -2.1363 -1.2167 42 1 0.6797 -2.3426 -0.8175 43 1 -0.9132 -4.8590 -2.3200 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996304481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:08 Heat of formation + Delta-G solvation = -58.601691 kcal Electronic energy + Delta-G solvation = -25969.871277 eV Core-core repulsion = 22436.010856 eV Total energy + Delta-G solvation = -3533.860421 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.67652 -40.47469 -39.23357 -36.80530 -35.59690 -34.58507 -34.30490 -32.44849 -29.42170 -28.17826 -27.91490 -25.80683 -25.50690 -24.23336 -22.82602 -21.19744 -20.24216 -19.79518 -18.94762 -18.48206 -17.77905 -17.39769 -17.10468 -16.74598 -16.11175 -16.03335 -15.61024 -15.22102 -14.86361 -14.82705 -14.54931 -14.38113 -14.04575 -13.58162 -13.50355 -13.22334 -12.91843 -12.85837 -12.79076 -12.71201 -12.59383 -12.00793 -11.98578 -11.88224 -11.70092 -11.52821 -11.37527 -11.23141 -11.08581 -10.91859 -10.75609 -10.46574 -9.60731 -8.81306 -7.77476 -5.04541 1.37983 1.53363 1.59659 1.64635 1.66922 2.00031 2.53792 2.65542 2.89528 3.42151 3.51837 3.66792 3.72976 3.84353 3.92002 3.94065 4.10969 4.14282 4.34439 4.40925 4.51722 4.64001 4.72895 4.81127 4.83749 4.85564 4.92407 4.96479 5.07500 5.12348 5.15814 5.16785 5.37369 5.39531 5.49319 5.62111 5.73621 5.91865 6.39844 6.60711 6.62974 7.17353 7.38636 7.50257 8.23253 8.48797 9.42917 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.008023 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.370603 B = 3489.332646 C = 5088.549272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.077 4.077 3 C -0.124 4.124 4 C 0.122 3.878 5 N -0.593 5.593 6 C 0.536 3.464 7 O -0.593 6.593 8 C -0.154 4.154 9 H 0.178 0.822 10 C -0.115 4.115 11 C -0.164 4.164 12 H 0.178 0.822 13 C 0.527 3.473 14 N -0.813 5.813 15 O -0.604 6.604 16 C 0.076 3.924 17 C 0.169 3.831 18 H 0.088 0.912 19 N -0.712 5.712 20 C -0.220 4.220 21 H 0.083 0.917 22 C -0.051 4.051 23 N -0.951 5.951 24 Si 0.946 3.054 25 H -0.266 1.266 26 H -0.305 1.305 27 H -0.314 1.314 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.158 0.842 38 H 0.413 0.587 39 H 0.397 0.603 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.373 0.627 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.697 9.668 -0.725 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.078 4.078 3 C -0.181 4.181 4 C -0.001 4.001 5 N -0.324 5.324 6 C 0.326 3.674 7 O -0.474 6.474 8 C -0.174 4.174 9 H 0.196 0.804 10 C -0.152 4.152 11 C -0.185 4.185 12 H 0.195 0.805 13 C 0.312 3.688 14 N -0.372 5.372 15 O -0.486 6.486 16 C -0.049 4.049 17 C 0.058 3.942 18 H 0.106 0.894 19 N -0.351 5.351 20 C -0.352 4.352 21 H 0.101 0.899 22 C -0.245 4.245 23 N -0.602 5.602 24 Si 0.779 3.221 25 H -0.191 1.191 26 H -0.233 1.233 27 H -0.243 1.243 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.176 0.824 38 H 0.244 0.756 39 H 0.226 0.774 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.206 0.794 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.593 9.164 0.362 15.578 hybrid contribution -1.464 -1.060 -0.822 1.986 sum 11.128 8.104 -0.460 13.774 Atomic orbital electron populations 1.21552 0.93826 1.01038 1.01419 1.21872 0.95887 0.96349 0.93739 1.21710 1.01307 0.92383 1.02739 1.21962 0.87131 0.93669 0.97363 1.48281 1.28567 1.43072 1.12468 1.19957 0.83578 0.78611 0.85269 1.90672 1.72437 1.65342 1.18993 1.22387 0.98899 0.90670 1.05493 0.80441 1.23100 1.01604 0.96409 0.94124 1.22416 0.94367 0.98032 1.03716 0.80506 1.20327 0.87498 0.79055 0.81900 1.43807 1.15042 1.55990 1.22329 1.90681 1.81377 1.44338 1.32224 1.23479 1.00698 1.01656 0.79079 1.21658 0.88639 0.88713 0.95180 0.89384 1.42472 1.50006 1.33616 1.08972 1.19547 1.19231 1.08145 0.88317 0.89900 1.25095 1.00393 1.00259 0.98742 1.69790 1.31863 1.26071 1.32456 0.85494 0.76154 0.77749 0.82688 1.19065 1.23286 1.24285 0.92366 0.92040 0.94699 0.91434 0.91054 0.91932 0.95484 0.91633 0.90685 0.82447 0.75634 0.77356 0.88660 0.90441 0.79378 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 8.16 71.98 0.59 -3.01 16 2 C -0.08 -2.05 0.80 -51.00 -0.04 -2.10 16 3 C -0.12 -2.39 8.44 71.98 0.61 -1.78 16 4 C 0.12 3.88 6.03 86.73 0.52 4.41 16 5 N -0.59 -18.29 3.32 -811.36 -2.70 -20.99 16 6 C 0.54 18.64 6.60 87.66 0.58 19.22 16 7 O -0.59 -26.54 16.72 -3.03 -0.05 -26.59 16 8 C -0.15 -3.81 5.09 -11.51 -0.06 -3.87 16 9 H 0.18 2.73 8.14 -2.38 -0.02 2.71 16 10 C -0.11 -2.87 9.55 30.62 0.29 -2.58 16 11 C -0.16 -4.31 6.18 -11.54 -0.07 -4.38 16 12 H 0.18 3.08 8.14 -2.39 -0.02 3.06 16 13 C 0.53 20.08 6.82 87.66 0.60 20.68 16 14 N -0.81 -30.69 8.87 -173.54 -1.54 -32.23 16 15 O -0.60 -29.04 17.32 -3.03 -0.05 -29.09 16 16 C 0.08 1.91 6.09 86.93 0.53 2.44 16 17 C 0.17 4.94 2.96 46.46 0.14 5.07 16 18 H 0.09 2.40 7.99 -2.39 -0.02 2.38 16 19 N -0.71 -27.62 4.57 -316.01 -1.44 -29.07 16 20 C -0.22 -9.48 9.96 84.03 0.84 -8.64 16 21 H 0.08 3.37 7.83 -2.91 -0.02 3.35 16 22 C -0.05 -2.43 5.50 84.86 0.47 -1.97 16 23 N -0.95 -49.63 13.06 21.65 0.28 -49.35 16 24 Si 0.95 40.45 29.55 68.60 2.03 42.47 16 25 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 26 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.03 1.30 6.34 -2.39 -0.02 1.28 16 31 H 0.07 1.15 7.42 -2.39 -0.02 1.13 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.03 1.05 7.82 -2.39 -0.02 1.04 16 35 H 0.07 1.98 7.85 -2.39 -0.02 1.96 16 36 H 0.07 2.56 7.47 -2.39 -0.02 2.55 16 37 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.41 14.60 8.83 -92.71 -0.82 13.78 16 39 H 0.40 17.26 8.93 -92.70 -0.83 16.43 16 40 H 0.10 1.76 7.69 -2.39 -0.02 1.74 16 41 H 0.08 2.00 7.69 -2.39 -0.02 1.98 16 42 H 0.37 17.05 6.32 -92.71 -0.59 16.47 16 43 H 0.24 12.97 8.31 -92.71 -0.77 12.20 16 Total: -1.00 -68.02 354.43 0.33 -67.70 By element: Atomic # 1 Polarization: 54.83 SS G_CDS: -1.19 Total: 53.65 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 4.99 Total: 23.49 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -5.40 Total: -131.64 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -0.10 Total: -55.67 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Total: -68.02 0.33 -67.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996304481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.095 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds