Wall clock time and date at job start Tue Mar 31 2020 03:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.30492 * 2 1 4 4 C 1.54387 * 110.34340 * 237.70827 * 2 1 3 5 5 N 1.48150 * 104.62043 * 264.99784 * 4 2 1 6 6 C 1.34775 * 127.83651 * 140.39351 * 5 4 2 7 7 O 1.21280 * 120.00050 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99769 * 180.02562 * 6 5 4 9 9 H 1.09007 * 115.55012 * 56.30516 * 8 6 5 10 10 C 1.52998 * 117.49826 * 201.97912 * 8 6 5 11 11 C 1.53002 * 60.00090 * 107.49205 * 10 8 6 12 12 H 1.08997 * 117.50761 * 107.49120 * 11 10 8 13 13 C 1.50702 * 117.49390 * 252.51246 * 11 10 8 14 14 N 1.34775 * 120.00351 * 212.44332 * 13 11 10 15 15 O 1.21288 * 119.99898 * 32.44519 * 13 11 10 16 16 C 1.48147 * 104.32002 * 320.41752 * 5 4 2 17 17 C 1.54285 * 110.33951 * 122.17300 * 2 1 3 18 18 H 1.09003 * 110.34189 * 237.84443 * 17 2 1 19 19 N 1.46501 * 110.34479 * 359.97438 * 17 2 1 20 20 C 1.36937 * 119.99915 * 204.99845 * 19 17 2 21 21 H 1.08000 * 120.00109 * 0.27922 * 20 19 17 22 22 C 1.38804 * 119.99874 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00353 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99971 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47146 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47320 * 120.00282 * 24 22 20 27 27 H 1.48507 * 109.47043 * 240.00012 * 24 22 20 28 28 H 1.09001 * 109.47408 * 297.83014 * 1 2 3 29 29 H 1.08997 * 109.47075 * 57.82984 * 1 2 3 30 30 H 1.09003 * 109.47282 * 177.82655 * 1 2 3 31 31 H 1.09002 * 109.46998 * 182.17450 * 3 2 1 32 32 H 1.09004 * 109.46797 * 302.17077 * 3 2 1 33 33 H 1.08994 * 109.47364 * 62.17560 * 3 2 1 34 34 H 1.09009 * 110.40715 * 23.78071 * 4 2 1 35 35 H 1.09000 * 110.40776 * 146.21096 * 4 2 1 36 36 H 1.09007 * 117.49468 * 214.97871 * 10 8 6 37 37 H 1.08997 * 117.50127 * 359.97240 * 10 8 6 38 38 H 0.97002 * 119.99765 * 0.02562 * 14 13 11 39 39 H 0.97002 * 120.00426 * 179.97438 * 14 13 11 40 40 H 1.09004 * 110.40180 * 280.79435 * 16 5 4 41 41 H 1.08999 * 110.40513 * 158.36962 * 16 5 4 42 42 H 0.96996 * 119.99919 * 25.00338 * 19 17 2 43 43 H 0.97001 * 120.00359 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 2.3139 -2.1446 -0.7204 6 6 2.0770 -3.3119 -1.3511 7 8 1.6046 -3.3127 -2.4681 8 6 2.3979 -4.6162 -0.6677 9 1 1.9222 -4.7689 0.3011 10 6 2.6060 -5.8457 -1.5542 11 6 3.8030 -5.1893 -0.8634 12 1 4.2521 -5.7189 -0.0232 13 6 4.7601 -4.4062 -1.7248 14 7 6.0699 -4.3640 -1.4103 15 8 4.3515 -3.8139 -2.7012 16 6 2.8801 -1.9416 0.6334 17 6 2.0663 -0.7703 1.2245 18 1 2.7080 -0.1264 1.8260 19 7 0.9553 -1.2783 2.0332 20 6 1.1370 -1.5256 3.3678 21 1 2.0980 -1.3419 3.8251 22 6 0.0846 -2.0075 4.1338 23 7 -1.0879 -2.2271 3.5775 24 14 0.3322 -2.3441 5.9545 25 1 1.7308 -2.0185 6.3324 26 1 -0.6031 -1.5041 6.7450 27 1 0.0657 -3.7782 6.2334 28 1 -0.3634 0.4798 0.9088 29 1 -0.3633 0.5471 -0.8699 30 1 -0.3634 -1.0269 -0.0390 31 1 3.1501 1.4193 -0.0390 32 1 1.6738 1.9655 -0.8699 33 1 1.7372 1.9421 0.9088 34 1 1.3222 -0.7891 -2.0198 35 1 2.9949 -0.3258 -1.5790 36 1 2.2675 -6.8074 -1.1684 37 1 2.5103 -5.7114 -2.6316 38 1 6.3967 -4.8380 -0.6296 39 1 6.6860 -3.8603 -1.9649 40 1 3.9354 -1.6765 0.5682 41 1 2.7493 -2.8387 1.2385 42 1 0.0911 -1.4396 1.6233 43 1 -1.8234 -2.5635 4.1130 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996304482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:10 Heat of formation + Delta-G solvation = -52.299414 kcal Electronic energy + Delta-G solvation = -25310.323214 eV Core-core repulsion = 21776.736080 eV Total energy + Delta-G solvation = -3533.587134 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66349 -40.57076 -39.15050 -36.79700 -35.70141 -34.60624 -34.50438 -32.58876 -29.35018 -28.12985 -28.07951 -25.85346 -25.63416 -24.31945 -22.95230 -21.33905 -20.29216 -19.74343 -19.05382 -18.61184 -18.09807 -17.40043 -16.94170 -16.58793 -16.16401 -15.89928 -15.61109 -15.50760 -15.24358 -15.01254 -14.45742 -14.28567 -13.92104 -13.83493 -13.38785 -13.26441 -12.97655 -12.87857 -12.82690 -12.67116 -12.49339 -12.10103 -12.01951 -11.93427 -11.68635 -11.59872 -11.41955 -11.33415 -11.12009 -10.94529 -10.77571 -10.63309 -9.68538 -8.88718 -7.87880 -5.16039 1.21836 1.51520 1.52846 1.61985 1.83366 2.00603 2.51587 2.60859 2.87379 3.40932 3.44666 3.66922 3.71737 3.82700 3.82963 3.88306 4.04671 4.18980 4.26655 4.38018 4.45817 4.62612 4.66272 4.70444 4.78621 4.79036 4.85184 4.90569 4.99361 5.03256 5.07972 5.13446 5.31845 5.33438 5.40576 5.56035 5.63663 5.89681 6.33091 6.46464 6.68089 7.26181 7.36376 7.40645 8.16328 8.39936 9.35896 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.005480 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.362179 B = 5107.982484 C = 6026.114539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.081 4.081 3 C -0.124 4.124 4 C 0.119 3.881 5 N -0.611 5.611 6 C 0.562 3.438 7 O -0.583 6.583 8 C -0.172 4.172 9 H 0.142 0.858 10 C -0.110 4.110 11 C -0.155 4.155 12 H 0.174 0.826 13 C 0.530 3.470 14 N -0.827 5.827 15 O -0.578 6.578 16 C 0.086 3.914 17 C 0.166 3.834 18 H 0.079 0.921 19 N -0.728 5.728 20 C -0.231 4.231 21 H 0.084 0.916 22 C -0.074 4.074 23 N -0.972 5.972 24 Si 0.967 3.033 25 H -0.261 1.261 26 H -0.302 1.302 27 H -0.298 1.298 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.149 0.851 37 H 0.086 0.914 38 H 0.420 0.580 39 H 0.408 0.592 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.377 0.623 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.895 -2.686 -5.846 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.082 4.082 3 C -0.182 4.182 4 C -0.004 4.004 5 N -0.343 5.343 6 C 0.352 3.648 7 O -0.463 6.463 8 C -0.193 4.193 9 H 0.160 0.840 10 C -0.148 4.148 11 C -0.176 4.176 12 H 0.192 0.808 13 C 0.315 3.685 14 N -0.391 5.391 15 O -0.458 6.458 16 C -0.039 4.039 17 C 0.056 3.944 18 H 0.096 0.904 19 N -0.369 5.369 20 C -0.362 4.362 21 H 0.102 0.898 22 C -0.266 4.266 23 N -0.623 5.623 24 Si 0.798 3.202 25 H -0.185 1.185 26 H -0.230 1.230 27 H -0.226 1.226 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.166 0.834 37 H 0.104 0.896 38 H 0.252 0.748 39 H 0.240 0.760 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.212 0.788 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.314 -2.472 -6.868 16.965 hybrid contribution -0.472 -0.317 0.999 1.149 sum 14.842 -2.789 -5.869 16.202 Atomic orbital electron populations 1.21544 0.94989 0.99867 1.01176 1.21747 0.95565 0.96839 0.94074 1.21740 1.01489 0.92572 1.02394 1.22408 1.00428 0.81393 0.96170 1.48782 1.62293 1.05048 1.18146 1.19477 0.76702 0.84303 0.84363 1.90602 1.47189 1.87500 1.21043 1.22162 1.00628 0.93195 1.03352 0.84016 1.23081 0.96596 0.96229 0.98895 1.22517 0.88340 1.03182 1.03598 0.80836 1.19992 0.84209 0.79990 0.84282 1.43536 1.07397 1.55065 1.33150 1.90849 1.78305 1.46543 1.30090 1.23342 0.97413 1.01383 0.81749 1.21448 0.89659 0.92546 0.90795 0.90354 1.42936 1.10463 1.77376 1.06127 1.19718 0.96525 1.33797 0.86203 0.89837 1.25476 0.95780 1.03502 1.01890 1.69845 1.02479 1.53683 1.36309 0.85156 0.77693 0.76505 0.80887 1.18486 1.22994 1.22600 0.93096 0.91885 0.95653 0.90762 0.91379 0.92425 0.92364 0.89917 0.83361 0.89592 0.74807 0.76041 0.89977 0.90727 0.78803 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.35 7.09 71.98 0.51 -3.83 16 2 C -0.08 -2.58 1.03 -51.28 -0.05 -2.63 16 3 C -0.12 -3.07 8.26 71.98 0.59 -2.48 16 4 C 0.12 3.94 6.14 86.53 0.53 4.47 16 5 N -0.61 -21.86 3.32 -807.93 -2.68 -24.54 16 6 C 0.56 22.00 5.58 87.66 0.49 22.49 16 7 O -0.58 -27.46 16.29 7.92 0.13 -27.33 16 8 C -0.17 -5.16 5.16 -11.54 -0.06 -5.22 16 9 H 0.14 4.18 7.96 -2.38 -0.02 4.16 16 10 C -0.11 -2.70 9.58 30.59 0.29 -2.41 16 11 C -0.16 -3.30 6.19 -11.54 -0.07 -3.37 16 12 H 0.17 2.03 8.14 -2.39 -0.02 2.01 16 13 C 0.53 13.12 7.57 87.66 0.66 13.78 16 14 N -0.83 -11.50 8.87 -173.53 -1.54 -13.04 16 15 O -0.58 -21.06 15.34 7.89 0.12 -20.94 16 16 C 0.09 2.80 6.63 86.53 0.57 3.37 16 17 C 0.17 5.94 3.35 45.90 0.15 6.09 16 18 H 0.08 2.65 7.66 -2.39 -0.02 2.63 16 19 N -0.73 -33.90 4.57 -318.65 -1.46 -35.36 16 20 C -0.23 -11.70 9.96 84.03 0.84 -10.87 16 21 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 22 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 23 N -0.97 -57.93 13.06 21.65 0.28 -57.65 16 24 Si 0.97 43.84 29.55 68.60 2.03 45.87 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 26 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 28 H 0.05 2.04 7.76 -2.39 -0.02 2.02 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.02 1.07 6.98 -2.39 -0.02 1.06 16 31 H 0.07 1.54 8.10 -2.39 -0.02 1.52 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 2.14 7.60 -2.38 -0.02 2.12 16 35 H 0.08 2.41 7.84 -2.39 -0.02 2.39 16 36 H 0.15 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.09 2.64 7.72 -2.39 -0.02 2.63 16 38 H 0.42 2.64 8.83 -92.71 -0.82 1.82 16 39 H 0.41 5.07 8.93 -92.71 -0.83 4.25 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.59 7.23 -2.39 -0.02 2.57 16 42 H 0.38 19.68 5.11 -92.71 -0.47 19.20 16 43 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -78.78 351.07 0.74 -78.04 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: -1.07 Total: 39.12 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 4.93 Total: 15.82 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -5.39 Total: -130.58 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: 0.25 Total: -48.27 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -78.78 0.74 -78.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996304482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.741 kcal (2) G-P(sol) polarization free energy of solvation -78.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds