Wall clock time and date at job start Tue Mar 31 2020 03:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 110.85602 * 2 1 4 4 O 1.21287 * 120.00169 * 121.74148 * 3 2 1 5 5 N 1.34773 * 120.00136 * 301.74656 * 3 2 1 6 6 C 1.46932 * 120.63314 * 174.90598 * 5 3 2 7 7 C 1.53189 * 108.77366 * 126.41242 * 6 5 3 8 8 C 1.53036 * 109.31744 * 54.63727 * 7 6 5 9 9 C 1.53043 * 109.53453 * 298.63421 * 8 7 6 10 10 H 1.09001 * 109.52252 * 301.39625 * 9 8 7 11 11 N 1.46504 * 109.49884 * 181.31732 * 9 8 7 12 12 C 1.36933 * 120.00085 * 85.15770 * 11 9 8 13 13 H 1.08008 * 120.00212 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00312 * 180.02562 * 12 11 9 15 15 N 1.31630 * 119.99668 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00522 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47539 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.47064 * 300.00054 * 16 14 12 19 19 H 1.48498 * 109.46943 * 59.99696 * 16 14 12 20 20 C 1.46926 * 120.63051 * 354.92609 * 5 3 2 21 21 C 1.54472 * 110.97423 * 236.20833 * 2 1 3 22 22 N 1.46861 * 105.42647 * 216.44427 * 21 2 1 23 23 C 1.34422 * 111.30965 * 17.01602 * 22 21 2 24 24 O 1.21279 * 124.93803 * 179.62685 * 23 22 21 25 25 C 1.51275 * 110.11417 * 359.59140 * 23 22 21 26 26 H 1.09003 * 109.46688 * 65.92633 * 1 2 3 27 27 H 1.08999 * 109.47163 * 185.92741 * 1 2 3 28 28 H 1.08997 * 109.47294 * 305.93011 * 1 2 3 29 29 H 1.08997 * 109.58479 * 246.19502 * 6 5 3 30 30 H 1.09003 * 109.58263 * 6.48146 * 6 5 3 31 31 H 1.09003 * 109.49656 * 174.59236 * 7 6 5 32 32 H 1.09000 * 109.49689 * 294.64864 * 7 6 5 33 33 H 1.09003 * 109.46420 * 178.61899 * 8 7 6 34 34 H 1.08999 * 109.46403 * 58.64999 * 8 7 6 35 35 H 0.97001 * 119.99949 * 265.16488 * 11 9 8 36 36 H 0.97001 * 119.99792 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.58832 * 113.80175 * 20 5 3 38 38 H 1.09007 * 109.58683 * 353.37433 * 20 5 3 39 39 H 1.09007 * 110.24429 * 335.43131 * 21 2 1 40 40 H 1.09003 * 110.24711 * 97.42812 * 21 2 1 41 41 H 0.97004 * 124.33925 * 197.02252 * 22 21 2 42 42 H 1.09003 * 110.48378 * 225.06667 * 25 23 22 43 43 H 1.09000 * 110.59982 * 102.48014 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0666 1.4083 0.0000 4 8 2.7988 1.7783 0.8933 5 7 1.7326 2.2566 -0.9925 6 6 2.1557 3.6630 -0.9494 7 6 2.8843 3.9990 -2.2544 8 6 1.9836 3.6498 -3.4413 9 6 1.6803 2.1498 -3.4298 10 1 2.6137 1.5891 -3.4798 11 7 0.8440 1.8111 -4.5839 12 6 1.4240 1.5476 -5.7960 13 1 2.4981 1.5891 -5.9012 14 6 0.6315 1.2272 -6.8897 15 7 -0.6776 1.1771 -6.7618 16 14 1.4228 0.8670 -8.5431 17 1 0.3670 0.5549 -9.5397 18 1 2.1918 2.0550 -8.9931 19 1 2.3386 -0.2945 -8.4110 20 6 0.9381 1.7929 -2.1381 21 6 2.0830 -0.8022 -1.1987 22 7 3.2862 -1.4773 -0.6953 23 6 3.3092 -1.4969 0.6485 24 8 4.1856 -1.9976 1.3209 25 6 2.0834 -0.8029 1.2000 26 1 -0.3633 0.4192 -0.9383 27 1 -0.3633 -1.0222 0.1061 28 1 -0.3634 0.6030 0.8321 29 1 1.2810 4.3047 -0.8437 30 1 2.8263 3.8170 -0.1039 31 1 3.1190 5.0632 -2.2764 32 1 3.8069 3.4217 -2.3150 33 1 2.4900 3.9107 -4.3707 34 1 1.0511 4.2093 -3.3666 35 1 -0.1207 1.7736 -4.4895 36 1 -1.2314 0.9536 -7.5261 37 1 -0.0359 2.2820 -2.1293 38 1 0.8072 0.7123 -2.0786 39 1 1.3495 -1.5367 -1.5316 40 1 2.3414 -0.1290 -2.0161 41 1 3.9758 -1.8598 -1.2602 42 1 2.3586 -0.1319 2.0137 43 1 1.3498 -1.5336 1.5409 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999795796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:58 Heat of formation + Delta-G solvation = -52.461562 kcal Electronic energy + Delta-G solvation = -25350.522509 eV Core-core repulsion = 21816.928344 eV Total energy + Delta-G solvation = -3533.594165 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38575 -39.38870 -37.50344 -36.54560 -34.45489 -33.36685 -32.13588 -31.37817 -28.73323 -28.15608 -26.39876 -25.66349 -23.93373 -22.83450 -21.59767 -20.68440 -20.08234 -18.87537 -17.61292 -17.14263 -16.96477 -16.15184 -15.56575 -15.12467 -15.04107 -14.69046 -14.38377 -14.08226 -13.84036 -13.70315 -13.58446 -13.27164 -13.03712 -12.93502 -12.75789 -12.46019 -12.19555 -12.12118 -11.68506 -11.31862 -11.12142 -11.05149 -10.97674 -10.71663 -10.52678 -10.45977 -10.21551 -9.88607 -9.81837 -9.76613 -9.16284 -9.04087 -8.54456 -7.14400 -5.91589 -3.22028 2.49875 2.60248 2.91901 3.28211 3.34768 3.40507 3.40862 4.04154 4.19770 4.24945 4.47628 4.60659 4.90971 5.04252 5.14763 5.18880 5.25854 5.31504 5.36094 5.42814 5.44864 5.47445 5.50913 5.58834 5.68392 5.72262 5.76300 5.84043 5.94854 6.02538 6.21997 6.26792 6.31004 6.59103 6.68700 6.71046 6.88315 6.93142 7.40256 7.56613 8.10958 8.19622 8.26098 9.38023 9.90520 10.25734 11.30357 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016456 B = 0.004790 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.131625 B = 5844.134481 C = 6637.572719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C 0.530 3.470 4 O -0.541 6.541 5 N -0.599 5.599 6 C 0.112 3.888 7 C -0.133 4.133 8 C -0.138 4.138 9 C 0.166 3.834 10 H 0.050 0.950 11 N -0.720 5.720 12 C -0.244 4.244 13 H 0.070 0.930 14 C -0.007 4.007 15 N -0.930 5.930 16 Si 0.906 3.094 17 H -0.290 1.290 18 H -0.286 1.286 19 H -0.285 1.285 20 C 0.086 3.914 21 C 0.103 3.897 22 N -0.730 5.730 23 C 0.526 3.474 24 O -0.538 6.538 25 C -0.138 4.138 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.385 0.615 36 H 0.257 0.743 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.412 0.588 42 H 0.118 0.882 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -0.023 12.003 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C 0.317 3.683 4 O -0.418 6.418 5 N -0.332 5.332 6 C -0.010 4.010 7 C -0.172 4.172 8 C -0.178 4.178 9 C 0.055 3.945 10 H 0.068 0.932 11 N -0.362 5.362 12 C -0.375 4.375 13 H 0.088 0.912 14 C -0.204 4.204 15 N -0.578 5.578 16 Si 0.737 3.263 17 H -0.216 1.216 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.037 4.037 21 C -0.021 4.021 22 N -0.386 5.386 23 C 0.312 3.688 24 O -0.414 6.414 25 C -0.179 4.179 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.218 0.782 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.251 0.749 42 H 0.136 0.864 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.222 -0.080 12.735 12.794 hybrid contribution 0.253 -0.189 -1.511 1.543 sum 1.476 -0.269 11.224 11.324 Atomic orbital electron populations 1.22071 0.90187 1.03782 1.04315 1.21687 0.98508 0.92933 0.96862 1.20064 0.80204 0.86419 0.81590 1.90681 1.36495 1.77561 1.37084 1.48009 1.53503 1.10311 1.21355 1.21642 0.99466 0.80734 0.99149 1.21926 0.99263 1.01135 0.94850 1.22279 0.99000 0.99487 0.97050 1.20507 0.94316 0.93342 0.86297 0.93176 1.42295 1.05511 1.83158 1.05212 1.19127 0.91733 1.39948 0.86677 0.91218 1.24724 0.95385 1.02189 0.98083 1.69639 1.02757 1.54835 1.30567 0.86293 0.77993 0.78180 0.83843 1.21621 1.21223 1.21204 1.22571 0.94818 1.00859 0.85445 1.22490 0.87540 0.96327 0.95767 1.46248 1.24768 1.59867 1.07713 1.20798 0.87161 0.78308 0.82530 1.90735 1.40343 1.47552 1.62814 1.22384 0.96688 1.00103 0.98682 0.89919 0.90656 0.91202 0.91495 0.89413 0.91316 0.91967 0.91490 0.92361 0.78151 0.93304 0.90923 0.88652 0.89146 0.88538 0.74871 0.86407 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.13 37.16 0.30 -0.93 16 2 C -0.10 -1.05 0.60 -154.03 -0.09 -1.14 16 3 C 0.53 7.30 6.52 -10.99 -0.07 7.23 16 4 O -0.54 -9.14 14.93 5.55 0.08 -9.06 16 5 N -0.60 -7.81 2.97 -172.76 -0.51 -8.32 16 6 C 0.11 1.41 6.44 -3.71 -0.02 1.38 16 7 C -0.13 -1.72 6.08 -26.62 -0.16 -1.88 16 8 C -0.14 -2.15 5.47 -26.69 -0.15 -2.30 16 9 C 0.17 2.79 2.80 -67.81 -0.19 2.60 16 10 H 0.05 0.90 7.70 -51.93 -0.40 0.50 16 11 N -0.72 -15.53 5.12 -53.31 -0.27 -15.81 16 12 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 13 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 15 N -0.93 -25.80 13.06 55.49 0.72 -25.08 16 16 Si 0.91 20.97 29.55 -169.99 -5.02 15.94 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.09 1.14 3.50 -3.71 -0.01 1.13 16 21 C 0.10 1.12 5.63 -3.07 -0.02 1.11 16 22 N -0.73 -8.79 6.24 -59.14 -0.37 -9.16 16 23 C 0.53 7.51 8.43 -10.86 -0.09 7.42 16 24 O -0.54 -9.74 18.03 5.56 0.10 -9.64 16 25 C -0.14 -1.59 5.77 -26.74 -0.15 -1.74 16 26 H 0.08 0.73 5.22 -51.93 -0.27 0.45 16 27 H 0.07 0.50 8.01 -51.93 -0.42 0.09 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.38 8.78 7.80 -40.82 -0.32 8.46 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 38 H 0.10 1.16 3.16 -51.93 -0.16 1.00 16 39 H 0.09 0.82 7.89 -51.92 -0.41 0.42 16 40 H 0.10 1.17 5.57 -51.93 -0.29 0.88 16 41 H 0.41 4.48 8.96 -40.82 -0.37 4.11 16 42 H 0.12 1.52 6.98 -51.93 -0.36 1.15 16 43 H 0.11 0.97 7.80 -51.93 -0.41 0.56 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -31.64 335.23 -7.39 -39.03 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -6.27 Total: 10.69 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.91 Total: 6.34 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.43 Total: -58.36 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.18 Total: -18.69 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.64 -7.39 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999795796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.429 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds