Wall clock time and date at job start Tue Mar 31 2020 03:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86794 * 120.00324 * 2 1 4 4 H 1.48499 * 109.47357 * 272.91130 * 3 2 1 5 5 H 1.48498 * 109.47229 * 32.91105 * 3 2 1 6 6 H 1.48508 * 109.47568 * 152.91385 * 3 2 1 7 7 C 1.38816 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99752 * 339.35530 * 7 2 1 9 9 N 1.36935 * 120.00192 * 159.36407 * 7 2 1 10 10 C 1.46924 * 120.62820 * 332.62033 * 9 7 2 11 11 C 1.53199 * 108.77557 * 233.59004 * 10 9 7 12 12 C 1.53035 * 109.31427 * 305.36575 * 11 10 9 13 13 N 1.46502 * 109.46427 * 181.38471 * 12 11 10 14 14 C 1.34774 * 120.00180 * 154.97053 * 13 12 11 15 15 O 1.21280 * 120.00036 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99863 * 179.97438 * 14 13 12 17 17 C 1.52996 * 109.47136 * 180.02562 * 16 14 13 18 18 H 1.09001 * 110.28872 * 304.48167 * 17 16 14 19 19 C 1.54664 * 110.39998 * 182.48601 * 17 16 14 20 20 C 1.54628 * 101.68226 * 266.73854 * 19 17 16 21 21 C 1.51285 * 104.19907 * 334.98691 * 20 19 17 22 22 O 1.21277 * 124.94376 * 196.23037 * 21 20 19 23 23 N 1.34425 * 110.11009 * 16.25002 * 21 20 19 24 24 C 1.53047 * 109.52615 * 61.37365 * 12 11 10 25 25 C 1.46926 * 120.63296 * 152.60659 * 9 7 2 26 26 H 0.97005 * 119.99705 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.58429 * 113.80472 * 10 9 7 28 28 H 1.08996 * 109.58625 * 353.37868 * 10 9 7 29 29 H 1.09002 * 109.49497 * 185.41615 * 11 10 9 30 30 H 1.08998 * 109.49779 * 65.32255 * 11 10 9 31 31 H 1.08998 * 109.46266 * 301.35984 * 12 11 10 32 32 H 0.97001 * 119.99572 * 334.97717 * 13 12 11 33 33 H 1.09007 * 109.46780 * 60.00473 * 16 14 13 34 34 H 1.09001 * 109.47808 * 300.00759 * 16 14 13 35 35 H 1.09000 * 111.19291 * 148.56833 * 19 17 16 36 36 H 1.08995 * 110.85296 * 24.76265 * 19 17 16 37 37 H 1.09000 * 110.48680 * 216.30625 * 20 19 17 38 38 H 1.09001 * 110.60078 * 93.72200 * 20 19 17 39 39 H 0.97002 * 124.34449 * 180.40809 * 23 21 20 40 40 H 1.08996 * 109.50152 * 58.57720 * 24 12 11 41 41 H 1.08996 * 109.49741 * 178.67958 * 24 12 11 42 42 H 1.08998 * 109.58437 * 246.19512 * 25 9 7 43 43 H 1.09001 * 109.58555 * 6.62238 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4362 2.0819 -1.3982 5 1 1.4799 2.6341 0.7607 6 1 3.5773 1.4231 0.6375 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3288 9 7 3.3136 -1.2401 -0.4185 10 6 3.8176 -0.2583 -1.3885 11 6 4.4627 -1.0076 -2.5586 12 6 5.5293 -1.9642 -2.0207 13 7 6.1715 -2.6584 -3.1396 14 6 7.4220 -3.1422 -3.0041 15 8 8.0157 -3.0033 -1.9557 16 6 8.0823 -3.8569 -4.1549 17 6 9.4861 -4.3023 -3.7407 18 1 10.0652 -3.4484 -3.3890 19 6 10.2074 -4.9840 -4.9269 20 6 9.8701 -6.4734 -4.6843 21 6 9.6080 -6.5570 -3.1967 22 8 9.5837 -7.5841 -2.5522 23 7 9.4055 -5.3271 -2.6933 24 6 4.8751 -2.9900 -1.0922 25 6 4.2349 -2.2631 0.0947 26 1 -0.4850 0.8401 0.0004 27 1 4.5599 0.3804 -0.9098 28 1 2.9910 0.3502 -1.7554 29 1 4.9254 -0.2918 -3.2381 30 1 3.7002 -1.5755 -3.0917 31 1 6.2783 -1.3984 -1.4665 32 1 5.6965 -2.7697 -3.9780 33 1 8.1517 -3.1832 -5.0091 34 1 7.4902 -4.7303 -4.4282 35 1 11.2834 -4.8156 -4.8833 36 1 9.7992 -4.6415 -5.8778 37 1 10.7146 -7.1054 -4.9589 38 1 8.9810 -6.7616 -5.2451 39 1 9.2250 -5.1413 -1.7584 40 1 4.1086 -3.5390 -1.6391 41 1 5.6313 -3.6852 -0.7279 42 1 5.0113 -1.7879 0.6943 43 1 3.6838 -2.9774 0.7064 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003788224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:42 Heat of formation + Delta-G solvation = -56.948796 kcal Electronic energy + Delta-G solvation = -24152.260206 eV Core-core repulsion = 20618.471459 eV Total energy + Delta-G solvation = -3533.788746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.88844 -39.64596 -37.78803 -36.71177 -34.63978 -32.37751 -31.57776 -31.23368 -30.47973 -29.83299 -26.28583 -24.73410 -23.00776 -22.12960 -21.46601 -20.78789 -20.34323 -19.62118 -17.78252 -17.32414 -16.62808 -16.47533 -15.86634 -15.76236 -15.07139 -14.75387 -14.21625 -14.10717 -14.04409 -13.83412 -13.52095 -13.30339 -13.20518 -13.00730 -12.94299 -12.46755 -12.26492 -12.04107 -11.83900 -11.64037 -11.38008 -11.05113 -10.87578 -10.61420 -10.33868 -10.22028 -10.09220 -9.96540 -9.74304 -9.50674 -9.36353 -8.90909 -8.67000 -7.03408 -5.98497 -3.34638 2.37971 2.56127 3.09939 3.17541 3.27259 3.45947 3.48868 3.99435 4.07358 4.24734 4.49116 4.57765 4.63032 4.87507 4.90892 4.94876 5.07721 5.16408 5.22940 5.28086 5.34881 5.38941 5.42403 5.57311 5.60370 5.76429 5.98336 6.03199 6.10964 6.26602 6.33530 6.52620 6.59097 6.60142 6.61358 6.67540 6.86843 6.89235 7.49395 7.92197 8.06149 8.17906 8.29460 8.90057 9.68040 10.05324 11.17501 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.035893 B = 0.003067 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.914947 B = 9127.678738 C = 9464.174537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.140 4.140 12 C 0.150 3.850 13 N -0.723 5.723 14 C 0.512 3.488 15 O -0.544 6.544 16 C -0.158 4.158 17 C 0.147 3.853 18 H 0.098 0.902 19 C -0.128 4.128 20 C -0.159 4.159 21 C 0.514 3.486 22 O -0.539 6.539 23 N -0.716 5.716 24 C -0.141 4.141 25 C 0.151 3.849 26 H 0.263 0.737 27 H 0.027 0.973 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.397 0.603 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.418 0.582 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.025 0.975 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.417 -6.659 -14.820 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.047 3.953 13 N -0.373 5.373 14 C 0.298 3.702 15 O -0.422 6.422 16 C -0.199 4.199 17 C 0.040 3.960 18 H 0.116 0.884 19 C -0.166 4.166 20 C -0.199 4.199 21 C 0.300 3.700 22 O -0.416 6.416 23 N -0.372 5.372 24 C -0.181 4.181 25 C 0.024 3.976 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.231 0.769 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.258 0.742 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.678 -7.032 -13.794 25.039 hybrid contribution -0.087 1.141 -0.121 1.150 sum 19.591 -5.891 -13.915 24.742 Atomic orbital electron populations 1.69835 1.05738 1.26583 1.52934 1.25289 0.95240 0.97576 0.99498 0.86967 0.80134 0.84678 0.76993 1.21638 1.23078 1.19498 1.18936 0.84901 0.94823 1.40196 0.89625 1.44404 1.08710 1.33314 1.46558 1.21306 0.97295 0.92048 0.89064 1.22345 0.97491 0.98403 0.99781 1.21004 0.94336 0.93138 0.86863 1.46310 1.15557 1.58203 1.17221 1.20508 0.81695 0.78698 0.89314 1.90684 1.64010 1.58060 1.29417 1.22233 0.97378 1.01964 0.98317 1.21385 0.94541 0.92049 0.88021 0.88414 1.22712 1.01654 0.93976 0.98292 1.22366 1.04714 0.98263 0.94537 1.20951 0.75425 0.83243 0.90393 1.90764 1.52174 1.32254 1.66453 1.46362 1.71970 1.06929 1.11935 1.22371 0.99361 0.97954 0.98384 1.20898 0.92336 0.91347 0.93013 0.92731 0.95496 0.90486 0.92271 0.91153 0.89903 0.76897 0.87517 0.88461 0.89448 0.88858 0.88053 0.87811 0.74172 0.91888 0.92346 0.95700 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.57 13.97 55.49 0.78 -26.80 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.04 24.34 -169.99 -4.14 17.90 16 4 H -0.29 -6.86 6.62 56.52 0.37 -6.49 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.67 6.64 56.52 0.38 -6.30 16 7 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.61 -14.16 2.77 -172.31 -0.48 -14.64 16 10 C 0.13 2.71 4.20 -3.71 -0.02 2.69 16 11 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 12 C 0.15 2.27 2.42 -67.89 -0.16 2.10 16 13 N -0.72 -8.14 5.08 -53.77 -0.27 -8.41 16 14 C 0.51 5.67 7.68 -10.99 -0.08 5.58 16 15 O -0.54 -7.99 14.62 5.56 0.08 -7.91 16 16 C -0.16 -1.01 5.32 -27.89 -0.15 -1.16 16 17 C 0.15 0.99 3.01 -66.92 -0.20 0.79 16 18 H 0.10 0.70 8.00 -51.93 -0.42 0.28 16 19 C -0.13 -0.51 6.72 -25.00 -0.17 -0.68 16 20 C -0.16 -0.96 6.85 -26.74 -0.18 -1.14 16 21 C 0.51 5.62 8.43 -10.86 -0.09 5.53 16 22 O -0.54 -8.49 18.03 5.56 0.10 -8.39 16 23 N -0.72 -7.07 5.46 -52.67 -0.29 -7.35 16 24 C -0.14 -2.35 5.65 -26.61 -0.15 -2.50 16 25 C 0.15 3.00 6.52 -3.71 -0.02 2.97 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.03 0.57 7.07 -51.93 -0.37 0.20 16 28 H 0.08 1.76 4.49 -51.93 -0.23 1.53 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.40 7.58 -51.93 -0.39 1.00 16 32 H 0.40 3.39 8.60 -40.82 -0.35 3.04 16 33 H 0.11 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.17 7.90 -51.93 -0.41 -0.24 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.42 4.83 8.19 -40.82 -0.33 4.49 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -35.05 339.77 -7.48 -42.53 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.76 Total: 2.94 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.62 Total: 5.00 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.26 Total: -57.20 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.18 Total: -16.30 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.05 -7.48 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003788224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.422 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds