Wall clock time and date at job start Tue Mar 31 2020 03:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00163 * 2 1 4 4 H 1.48497 * 109.46783 * 270.00201 * 3 2 1 5 5 H 1.48498 * 109.47016 * 30.00304 * 3 2 1 6 6 H 1.48497 * 109.46989 * 149.99900 * 3 2 1 7 7 C 1.38808 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00233 * 207.27057 * 7 2 1 9 9 N 1.36937 * 120.00102 * 27.27128 * 7 2 1 10 10 C 1.47426 * 125.65054 * 13.32023 * 9 7 2 11 11 C 1.55133 * 104.72293 * 155.81725 * 10 9 7 12 12 C 1.55153 * 101.48713 * 37.29373 * 11 10 9 13 13 H 1.09005 * 110.71790 * 82.69564 * 12 11 10 14 14 N 1.46496 * 110.87348 * 205.89927 * 12 11 10 15 15 C 1.34775 * 120.00387 * 200.06861 * 14 12 11 16 16 O 1.21285 * 119.99979 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00470 * 179.97438 * 15 14 12 18 18 N 1.46498 * 109.47128 * 179.97438 * 17 15 14 19 19 C 1.45754 * 117.94300 * 90.00720 * 18 17 15 20 20 C 1.52918 * 110.48688 * 160.92333 * 19 18 17 21 21 C 1.53352 * 108.67476 * 50.75160 * 20 19 18 22 22 C 1.53069 * 108.42111 * 292.46370 * 21 20 19 23 23 C 1.33353 * 117.94880 * 269.74010 * 18 17 15 24 24 O 1.21280 * 118.24790 * 2.22341 * 23 18 17 25 25 C 1.47027 * 125.65026 * 193.62441 * 9 7 2 26 26 H 0.97002 * 120.00050 * 185.85236 * 1 2 3 27 27 H 1.08997 * 110.36302 * 274.74656 * 10 9 7 28 28 H 1.08997 * 110.36398 * 37.06897 * 10 9 7 29 29 H 1.09004 * 111.19087 * 279.19036 * 11 10 9 30 30 H 1.08996 * 110.90182 * 155.28056 * 11 10 9 31 31 H 0.96998 * 120.00081 * 20.06421 * 14 12 11 32 32 H 1.08991 * 109.47506 * 300.00206 * 17 15 14 33 33 H 1.09004 * 109.46855 * 59.99624 * 17 15 14 34 34 H 1.09001 * 109.29597 * 281.23046 * 19 18 17 35 35 H 1.08996 * 109.30349 * 40.60925 * 19 18 17 36 36 H 1.09001 * 109.60332 * 170.50663 * 20 19 18 37 37 H 1.09002 * 109.60371 * 290.82721 * 20 19 18 38 38 H 1.08996 * 109.67373 * 52.20288 * 21 20 19 39 39 H 1.09004 * 109.67069 * 172.70352 * 21 20 19 40 40 H 1.09003 * 109.39620 * 169.03005 * 22 21 20 41 41 H 1.08997 * 109.40579 * 288.86128 * 22 21 20 42 42 H 1.09002 * 109.88426 * 300.44470 * 25 9 7 43 43 H 1.09004 * 109.87904 * 61.60811 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0002 -1.2545 0.4280 9 7 1.4396 -2.3219 -0.5444 10 6 0.2377 -2.3457 -1.3978 11 6 0.3679 -3.6511 -2.2259 12 6 0.9844 -4.6191 -1.1818 13 1 0.2090 -5.0420 -0.5430 14 7 1.7465 -5.6820 -1.8417 15 6 2.0161 -6.8265 -1.1830 16 8 1.6282 -6.9763 -0.0437 17 6 2.7996 -7.9202 -1.8620 18 7 2.9584 -9.0499 -0.9429 19 6 1.9362 -10.0888 -0.9547 20 6 2.4709 -11.3729 -0.3194 21 6 3.0870 -11.0277 1.0418 22 6 4.3403 -10.1815 0.8049 23 6 4.0319 -9.0660 -0.1519 24 8 4.7978 -8.1271 -0.2046 25 6 1.9205 -3.7002 -0.3689 26 1 -0.4850 -0.8357 0.0857 27 1 -0.6628 -2.3713 -0.7841 28 1 0.2237 -1.4782 -2.0576 29 1 1.0377 -3.5139 -3.0749 30 1 -0.6102 -4.0022 -2.5547 31 1 2.0571 -5.5622 -2.7528 32 1 2.2665 -8.2491 -2.7539 33 1 3.7818 -7.5415 -2.1449 34 1 1.0666 -9.7448 -0.3947 35 1 1.6408 -10.2920 -1.9840 36 1 1.6534 -12.0807 -0.1818 37 1 3.2301 -11.8124 -0.9663 38 1 2.3695 -10.4624 1.6366 39 1 3.3565 -11.9447 1.5658 40 1 4.6805 -9.7650 1.7530 41 1 5.1256 -10.8080 0.3820 42 1 2.9410 -3.7871 -0.7420 43 1 1.8845 -3.9738 0.6856 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015075605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:03 Heat of formation + Delta-G solvation = -45.800641 kcal Electronic energy + Delta-G solvation = -24244.424334 eV Core-core repulsion = 20711.119008 eV Total energy + Delta-G solvation = -3533.305326 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88549 -39.31440 -37.37814 -36.64606 -34.29599 -34.12205 -31.99341 -30.00716 -29.24741 -28.45622 -26.67368 -24.70002 -24.22885 -22.66166 -20.96406 -20.55193 -19.82075 -18.79043 -17.61537 -17.23310 -17.00040 -16.70828 -15.89059 -15.61623 -14.83605 -14.54641 -14.43357 -14.31991 -13.95179 -13.74909 -13.49981 -13.43719 -13.15052 -12.88332 -12.38963 -12.20826 -12.04605 -11.71159 -11.59267 -11.32866 -11.29752 -11.14613 -10.78041 -10.67470 -10.42787 -10.12943 -10.02418 -9.97449 -9.82502 -9.50126 -8.89180 -8.79291 -8.36996 -6.91652 -6.05237 -3.07927 2.42043 2.70458 2.74951 3.42268 3.55363 3.57455 3.74236 4.27675 4.35623 4.39358 4.49391 4.62723 4.77414 4.88715 5.04541 5.06673 5.12620 5.18227 5.25803 5.26619 5.38477 5.43828 5.47016 5.55415 5.59411 5.62311 5.71289 5.84832 5.99848 6.05597 6.14042 6.28276 6.46604 6.73296 6.92094 6.96459 7.02337 7.23020 7.64884 7.82537 8.01693 8.36485 8.52737 9.06664 9.86269 10.39283 11.28149 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.030118 B = 0.003110 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.440283 B = 9001.068051 C = 9446.922075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.028 4.028 3 Si 1.069 2.931 4 H -0.294 1.294 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.333 4.333 8 H 0.067 0.933 9 N -0.604 5.604 10 C 0.146 3.854 11 C -0.140 4.140 12 C 0.134 3.866 13 H 0.090 0.910 14 N -0.716 5.716 15 C 0.497 3.503 16 O -0.531 6.531 17 C 0.089 3.911 18 N -0.586 5.586 19 C 0.113 3.887 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.130 4.130 23 C 0.520 3.480 24 O -0.548 6.548 25 C 0.129 3.871 26 H 0.269 0.731 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.398 0.602 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.029 0.971 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 -25.460 -6.728 26.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.229 4.229 3 Si 0.899 3.101 4 H -0.221 1.221 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.460 4.460 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.020 3.980 11 C -0.179 4.179 12 C 0.029 3.971 13 H 0.108 0.892 14 N -0.368 5.368 15 C 0.282 3.718 16 O -0.407 6.407 17 C -0.038 4.038 18 N -0.318 5.318 19 C -0.010 4.010 20 C -0.171 4.171 21 C -0.163 4.163 22 C -0.170 4.170 23 C 0.309 3.691 24 O -0.426 6.426 25 C 0.003 3.997 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.232 0.768 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.046 0.954 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.186 -23.383 -5.901 24.325 hybrid contribution 0.253 -1.594 -0.278 1.638 sum 3.439 -24.977 -6.179 25.959 Atomic orbital electron populations 1.70760 1.06556 1.30238 1.48931 1.25739 0.96501 1.00927 0.99711 0.83448 0.74455 0.75740 0.76450 1.22109 1.21628 1.21913 1.19846 0.99355 0.87632 1.39215 0.91493 1.44562 1.31042 1.01078 1.56489 1.21573 0.90473 0.94000 0.91941 1.23151 1.00016 0.97092 0.97670 1.22016 0.93772 0.86423 0.94860 0.89170 1.46000 1.56898 1.16299 1.17618 1.21047 0.80200 0.83445 0.87156 1.90701 1.52000 1.80395 1.17623 1.21367 1.02812 0.87092 0.92567 1.46847 1.23482 1.21957 1.39540 1.21471 0.90822 0.87077 1.01639 1.21868 1.01694 0.96605 0.96966 1.21669 0.96948 1.00258 0.97420 1.21618 0.99613 0.95977 0.99798 1.20174 0.80243 0.88098 0.80587 1.90751 1.47969 1.36207 1.67641 1.21618 0.95651 0.85439 0.97032 0.91956 0.95409 0.92405 0.91148 0.91278 0.76782 0.87640 0.86651 0.91074 0.90666 0.89650 0.90941 0.90690 0.90493 0.88053 0.88407 0.95354 0.95527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.60 12.82 55.49 0.71 -27.89 16 2 C -0.03 -0.83 5.09 -17.43 -0.09 -0.92 16 3 Si 1.07 26.28 30.00 -169.99 -5.10 21.18 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.33 -9.90 10.05 -15.06 -0.15 -10.06 16 8 H 0.07 2.01 7.96 -52.48 -0.42 1.60 16 9 N -0.60 -16.19 3.33 -169.93 -0.57 -16.76 16 10 C 0.15 3.45 5.22 -2.41 -0.01 3.44 16 11 C -0.14 -2.45 6.71 -24.46 -0.16 -2.62 16 12 C 0.13 2.47 3.23 -66.10 -0.21 2.26 16 13 H 0.09 1.77 7.69 -51.93 -0.40 1.37 16 14 N -0.72 -10.42 5.13 -52.04 -0.27 -10.69 16 15 C 0.50 7.58 7.88 -10.99 -0.09 7.50 16 16 O -0.53 -10.41 16.15 5.55 0.09 -10.32 16 17 C 0.09 0.97 5.69 -5.20 -0.03 0.94 16 18 N -0.59 -6.53 2.30 -176.35 -0.41 -6.93 16 19 C 0.11 0.86 6.39 -4.49 -0.03 0.83 16 20 C -0.13 -0.73 6.02 -26.59 -0.16 -0.89 16 21 C -0.13 -0.84 6.04 -26.51 -0.16 -1.00 16 22 C -0.13 -1.17 6.03 -28.11 -0.17 -1.34 16 23 C 0.52 6.86 7.45 -11.88 -0.09 6.77 16 24 O -0.55 -9.72 16.21 5.56 0.09 -9.63 16 25 C 0.13 3.03 6.99 -3.06 -0.02 3.01 16 26 H 0.27 8.32 5.83 -40.82 -0.24 8.08 16 27 H 0.03 0.70 6.84 -51.93 -0.36 0.34 16 28 H 0.06 1.47 7.73 -51.93 -0.40 1.07 16 29 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.40 4.45 8.53 -40.82 -0.35 4.10 16 32 H 0.11 0.71 7.86 -51.93 -0.41 0.30 16 33 H 0.12 1.32 7.19 -51.93 -0.37 0.94 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.40 7.92 -51.93 -0.41 -0.02 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 38 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -38.73 346.89 -8.38 -47.11 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.79 Total: 0.79 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -1.37 Total: 7.92 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.53 Total: -62.27 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.18 Total: -19.96 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -5.10 Total: 21.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.73 -8.38 -47.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015075605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.305 kcal (2) G-P(sol) polarization free energy of solvation -38.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds