Wall clock time and date at job start Tue Mar 31 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86787 * 120.00284 * 2 1 4 4 H 1.48508 * 109.47225 * 274.98608 * 3 2 1 5 5 H 1.48503 * 109.47485 * 34.98300 * 3 2 1 6 6 H 1.48503 * 109.47359 * 154.98661 * 3 2 1 7 7 C 1.38809 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99937 * 187.06546 * 7 2 1 9 9 N 1.36936 * 120.00500 * 7.06097 * 7 2 1 10 10 C 1.47018 * 125.64821 * 354.88350 * 9 7 2 11 11 C 1.54322 * 107.27607 * 178.90463 * 10 9 7 12 12 C 1.55165 * 103.09783 * 337.71198 * 11 10 9 13 13 H 1.09000 * 111.00241 * 153.66877 * 12 11 10 14 14 N 1.46494 * 111.00534 * 277.51842 * 12 11 10 15 15 C 1.34773 * 119.99951 * 204.99742 * 14 12 11 16 16 O 1.21277 * 120.00187 * 0.02562 * 15 14 12 17 17 C 1.50707 * 119.99944 * 180.02562 * 15 14 12 18 18 H 1.08999 * 108.56620 * 297.93260 * 17 15 14 19 19 C 1.51772 * 108.61467 * 55.74318 * 17 15 14 20 20 C 1.53032 * 110.87236 * 188.12242 * 19 17 15 21 21 N 1.47195 * 108.64217 * 273.52744 * 20 19 17 22 22 C 1.33367 * 120.43285 * 71.99116 * 21 20 19 23 23 O 1.21280 * 119.89237 * 179.66101 * 22 21 20 24 24 C 1.51428 * 120.21301 * 359.67279 * 22 21 20 25 25 C 1.51795 * 108.61182 * 180.02562 * 17 15 14 26 26 C 1.47431 * 125.64950 * 174.83517 * 9 7 2 27 27 H 0.97002 * 120.00252 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.88619 * 59.47785 * 10 9 7 29 29 H 1.09005 * 110.00982 * 298.38983 * 10 9 7 30 30 H 1.08995 * 110.72183 * 96.16316 * 11 10 9 31 31 H 1.09000 * 110.72086 * 219.26615 * 11 10 9 32 32 H 0.97001 * 120.00509 * 25.00273 * 14 12 11 33 33 H 1.09002 * 109.19629 * 308.46972 * 19 17 15 34 34 H 1.08996 * 109.20234 * 67.75426 * 19 17 15 35 35 H 1.08996 * 109.62030 * 153.77695 * 20 19 17 36 36 H 1.09008 * 109.61392 * 33.27405 * 20 19 17 37 37 H 0.97003 * 119.77956 * 251.96486 * 21 20 19 38 38 H 1.08998 * 109.62820 * 169.08017 * 24 22 21 39 39 H 1.08997 * 109.79433 * 48.58795 * 24 22 21 40 40 H 1.09003 * 109.22505 * 292.39046 * 25 17 15 41 41 H 1.09000 * 109.22201 * 51.74348 * 25 17 15 42 42 H 1.09000 * 110.36261 * 323.00345 * 26 9 7 43 43 H 1.09000 * 110.36458 * 85.32958 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0101 -1.2022 0.0005 8 1 3.0840 -1.2058 0.1156 9 7 1.3332 -2.3836 -0.1447 10 6 -0.1283 -2.5322 -0.2033 11 6 -0.4288 -4.0331 -0.3997 12 6 0.8893 -4.5787 -1.0101 13 1 1.0150 -5.6378 -0.7849 14 7 0.9363 -4.3421 -2.4550 15 6 1.6907 -5.1334 -3.2432 16 8 2.3302 -6.0415 -2.7563 17 6 1.7395 -4.8896 -4.7296 18 1 0.7369 -5.0222 -5.1361 19 6 2.1718 -3.4550 -4.9713 20 6 2.0465 -3.0899 -6.4522 21 7 3.2852 -3.4868 -7.1411 22 6 3.5555 -4.7749 -7.3565 23 8 4.5761 -5.0905 -7.9306 24 6 2.5920 -5.8445 -6.8870 25 6 2.6576 -5.9212 -5.3598 26 6 1.9493 -3.7172 -0.2693 27 1 -0.4850 0.8400 0.0004 28 1 -0.5256 -1.9615 -1.0427 29 1 -0.5762 -2.1832 0.7272 30 1 -0.6387 -4.5127 0.5562 31 1 -1.2604 -4.1727 -1.0905 32 1 0.4246 -3.6160 -2.8445 33 1 1.5425 -2.7871 -4.3831 34 1 3.2093 -3.3358 -4.6593 35 1 1.9003 -2.0145 -6.5529 36 1 1.1994 -3.6190 -6.8890 37 1 3.9089 -2.8069 -7.4406 38 1 2.8758 -6.8062 -7.3144 39 1 1.5785 -5.5905 -7.1975 40 1 3.6816 -5.7363 -5.0352 41 1 2.3538 -6.9170 -5.0368 42 1 2.8664 -3.6581 -0.8555 43 1 2.1545 -4.1339 0.7168 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015404658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:40 Heat of formation + Delta-G solvation = -57.880531 kcal Electronic energy + Delta-G solvation = -24742.605026 eV Core-core repulsion = 21208.775877 eV Total energy + Delta-G solvation = -3533.829149 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66798 -39.47731 -37.47436 -36.43539 -33.94493 -33.83169 -32.06410 -31.08540 -29.22972 -27.71699 -26.85155 -24.60683 -24.13463 -22.18279 -20.42776 -20.14067 -19.78435 -19.65019 -17.72813 -17.31973 -16.90609 -16.41173 -15.93204 -15.21716 -14.76403 -14.70588 -14.32898 -14.08591 -13.88408 -13.71916 -13.38146 -13.33550 -12.81738 -12.50425 -12.36226 -12.01732 -11.89743 -11.86003 -11.60994 -11.08011 -11.00087 -10.97140 -10.91032 -10.74822 -10.40497 -10.17904 -10.02073 -9.91303 -9.76086 -9.62041 -9.23598 -8.77580 -8.55948 -6.88393 -5.79839 -3.11291 2.51422 2.81688 3.13511 3.33742 3.40951 3.41896 3.42283 4.29941 4.44144 4.46348 4.51940 4.56702 4.95719 5.04063 5.11672 5.18579 5.25093 5.28193 5.34093 5.39564 5.42407 5.56810 5.70836 5.72860 5.77741 5.83421 6.03387 6.09355 6.16100 6.31808 6.43420 6.47252 6.61659 6.64106 6.99313 7.07666 7.47150 7.49154 7.73372 7.82611 8.08421 8.17963 8.47572 9.15338 9.75366 10.41629 11.32332 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.004435 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.189114 B = 6312.244680 C = 7468.663132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.090 0.910 14 N -0.702 5.702 15 C 0.514 3.486 16 O -0.548 6.548 17 C -0.106 4.106 18 H 0.097 0.903 19 C -0.139 4.139 20 C 0.111 3.889 21 N -0.724 5.724 22 C 0.518 3.482 23 O -0.557 6.557 24 C -0.138 4.138 25 C -0.094 4.094 26 C 0.126 3.874 27 H 0.252 0.748 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.402 0.598 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.400 0.600 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -8.088 -12.240 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.050 3.950 11 C -0.193 4.193 12 C 0.021 3.979 13 H 0.108 0.892 14 N -0.352 5.352 15 C 0.299 3.701 16 O -0.426 6.426 17 C -0.127 4.127 18 H 0.115 0.885 19 C -0.178 4.178 20 C -0.014 4.014 21 N -0.376 5.376 22 C 0.305 3.695 23 O -0.435 6.435 24 C -0.178 4.178 25 C -0.132 4.132 26 C -0.001 4.001 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.237 0.763 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.236 0.764 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.744 -8.827 -12.068 15.053 hybrid contribution 0.306 1.751 -0.056 1.778 sum -1.438 -7.076 -12.125 14.112 Atomic orbital electron populations 1.69964 1.04831 1.24992 1.57115 1.24767 0.95666 0.97511 1.02295 0.86150 0.78792 0.83709 0.77460 1.21702 1.21774 1.20678 1.19056 0.91103 0.82521 1.42699 0.90581 1.44471 1.01457 1.00919 1.86172 1.21170 0.84686 0.88115 1.00994 1.23216 0.95589 1.00349 1.00098 1.22223 0.97253 0.99225 0.79206 0.89222 1.45860 1.47995 1.33546 1.07817 1.20500 0.79033 0.81841 0.88678 1.90678 1.43626 1.32180 1.76134 1.21015 1.01874 0.96582 0.93231 0.88537 1.21894 1.04355 0.94721 0.96803 1.21808 0.86452 1.01617 0.91482 1.45999 1.24122 1.07716 1.59791 1.20629 0.87014 0.84065 0.77783 1.90748 1.27921 1.82015 1.42809 1.22006 0.99616 0.98649 0.97535 1.21031 1.00822 0.99792 0.91590 1.22018 0.94869 0.86873 0.96388 0.93802 0.93488 0.93998 0.91039 0.91655 0.76300 0.89150 0.90195 0.88776 0.90237 0.76368 0.88228 0.89161 0.90813 0.89426 0.93992 0.95582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.57 10.36 55.49 0.57 -24.99 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 21.33 29.56 -169.99 -5.02 16.30 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.03 10.26 -15.06 -0.15 -6.19 16 8 H 0.08 2.02 7.84 -52.48 -0.41 1.61 16 9 N -0.60 -14.47 3.40 -169.76 -0.58 -15.05 16 10 C 0.18 3.87 5.37 -3.07 -0.02 3.85 16 11 C -0.15 -2.56 6.53 -24.89 -0.16 -2.72 16 12 C 0.13 2.13 3.46 -65.52 -0.23 1.90 16 13 H 0.09 1.49 7.54 -51.93 -0.39 1.10 16 14 N -0.70 -10.31 4.99 -51.48 -0.26 -10.57 16 15 C 0.51 7.36 7.14 -10.98 -0.08 7.29 16 16 O -0.55 -9.83 15.39 5.56 0.09 -9.75 16 17 C -0.11 -1.07 2.05 -93.00 -0.19 -1.26 16 18 H 0.10 0.72 7.87 -51.93 -0.41 0.31 16 19 C -0.14 -1.33 4.94 -27.34 -0.14 -1.47 16 20 C 0.11 0.78 6.47 -3.65 -0.02 0.75 16 21 N -0.72 -6.61 5.27 -59.88 -0.32 -6.93 16 22 C 0.52 6.05 7.06 -11.25 -0.08 5.97 16 23 O -0.56 -8.95 17.92 5.56 0.10 -8.85 16 24 C -0.14 -1.24 5.56 -27.50 -0.15 -1.39 16 25 C -0.09 -0.99 4.31 -27.32 -0.12 -1.11 16 26 C 0.13 2.57 6.95 -2.26 -0.02 2.56 16 27 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.05 1.12 7.30 -51.93 -0.38 0.74 16 29 H 0.04 1.05 7.61 -51.93 -0.40 0.66 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.40 5.45 7.66 -40.82 -0.31 5.14 16 33 H 0.09 0.90 6.96 -51.93 -0.36 0.54 16 34 H 0.08 0.94 8.05 -51.93 -0.42 0.53 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.42 6.71 -51.92 -0.35 0.07 16 37 H 0.40 3.41 8.91 -40.82 -0.36 3.05 16 38 H 0.10 0.87 8.13 -51.93 -0.42 0.45 16 39 H 0.09 0.58 6.78 -51.93 -0.35 0.22 16 40 H 0.07 0.95 7.86 -51.93 -0.41 0.55 16 41 H 0.09 0.95 7.75 -51.93 -0.40 0.55 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -33.49 339.80 -8.37 -41.86 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.62 Total: 4.92 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -1.45 Total: 7.93 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.57 Total: -57.53 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.19 Total: -18.60 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.49 -8.37 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015404658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.021 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds