Wall clock time and date at job start Tue Mar 31 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86787 * 120.00284 * 2 1 4 4 H 1.48508 * 109.47225 * 274.98608 * 3 2 1 5 5 H 1.48503 * 109.47485 * 34.98300 * 3 2 1 6 6 H 1.48503 * 109.47359 * 154.98661 * 3 2 1 7 7 C 1.38809 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99937 * 187.06546 * 7 2 1 9 9 N 1.36936 * 120.00500 * 7.06097 * 7 2 1 10 10 C 1.47018 * 125.64821 * 354.88350 * 9 7 2 11 11 C 1.54322 * 107.27607 * 178.90463 * 10 9 7 12 12 C 1.55165 * 103.09783 * 337.71198 * 11 10 9 13 13 H 1.09000 * 111.00241 * 153.66877 * 12 11 10 14 14 N 1.46494 * 111.00534 * 277.51842 * 12 11 10 15 15 C 1.34773 * 119.99951 * 204.99742 * 14 12 11 16 16 O 1.21277 * 120.00187 * 0.02562 * 15 14 12 17 17 C 1.50707 * 119.99944 * 180.02562 * 15 14 12 18 18 H 1.08999 * 108.56620 * 297.93260 * 17 15 14 19 19 C 1.51772 * 108.61467 * 55.74318 * 17 15 14 20 20 C 1.53032 * 110.87236 * 188.12242 * 19 17 15 21 21 N 1.47195 * 108.64217 * 273.52744 * 20 19 17 22 22 C 1.33367 * 120.43285 * 71.99116 * 21 20 19 23 23 O 1.21280 * 119.89237 * 179.66101 * 22 21 20 24 24 C 1.51428 * 120.21301 * 359.67279 * 22 21 20 25 25 C 1.51795 * 108.61182 * 180.02562 * 17 15 14 26 26 C 1.47431 * 125.64950 * 174.83517 * 9 7 2 27 27 H 0.97002 * 120.00252 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.88619 * 59.47785 * 10 9 7 29 29 H 1.09005 * 110.00982 * 298.38983 * 10 9 7 30 30 H 1.08995 * 110.72183 * 96.16316 * 11 10 9 31 31 H 1.09000 * 110.72086 * 219.26615 * 11 10 9 32 32 H 0.97001 * 120.00509 * 25.00273 * 14 12 11 33 33 H 1.09002 * 109.19629 * 308.46972 * 19 17 15 34 34 H 1.08996 * 109.20234 * 67.75426 * 19 17 15 35 35 H 1.08996 * 109.62030 * 153.77695 * 20 19 17 36 36 H 1.09008 * 109.61392 * 33.27405 * 20 19 17 37 37 H 0.97003 * 119.77956 * 251.96486 * 21 20 19 38 38 H 1.08998 * 109.62820 * 169.08017 * 24 22 21 39 39 H 1.08997 * 109.79433 * 48.58795 * 24 22 21 40 40 H 1.09003 * 109.22505 * 292.39046 * 25 17 15 41 41 H 1.09000 * 109.22201 * 51.74348 * 25 17 15 42 42 H 1.09000 * 110.36261 * 323.00345 * 26 9 7 43 43 H 1.09000 * 110.36458 * 85.32958 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0101 -1.2022 0.0005 8 1 3.0840 -1.2058 0.1156 9 7 1.3332 -2.3836 -0.1447 10 6 -0.1283 -2.5322 -0.2033 11 6 -0.4288 -4.0331 -0.3997 12 6 0.8893 -4.5787 -1.0101 13 1 1.0150 -5.6378 -0.7849 14 7 0.9363 -4.3421 -2.4550 15 6 1.6907 -5.1334 -3.2432 16 8 2.3302 -6.0415 -2.7563 17 6 1.7395 -4.8896 -4.7296 18 1 0.7369 -5.0222 -5.1361 19 6 2.1718 -3.4550 -4.9713 20 6 2.0465 -3.0899 -6.4522 21 7 3.2852 -3.4868 -7.1411 22 6 3.5555 -4.7749 -7.3565 23 8 4.5761 -5.0905 -7.9306 24 6 2.5920 -5.8445 -6.8870 25 6 2.6576 -5.9212 -5.3598 26 6 1.9493 -3.7172 -0.2693 27 1 -0.4850 0.8400 0.0004 28 1 -0.5256 -1.9615 -1.0427 29 1 -0.5762 -2.1832 0.7272 30 1 -0.6387 -4.5127 0.5562 31 1 -1.2604 -4.1727 -1.0905 32 1 0.4246 -3.6160 -2.8445 33 1 1.5425 -2.7871 -4.3831 34 1 3.2093 -3.3358 -4.6593 35 1 1.9003 -2.0145 -6.5529 36 1 1.1994 -3.6190 -6.8890 37 1 3.9089 -2.8069 -7.4406 38 1 2.8758 -6.8062 -7.3144 39 1 1.5785 -5.5905 -7.1975 40 1 3.6816 -5.7363 -5.0352 41 1 2.3538 -6.9170 -5.0368 42 1 2.8664 -3.6581 -0.8555 43 1 2.1545 -4.1339 0.7168 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015404658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:40 Heat of formation + Delta-G solvation = -83.058734 kcal Electronic energy + Delta-G solvation = -24743.696835 eV Core-core repulsion = 21208.775877 eV Total energy + Delta-G solvation = -3534.920958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.63263 -40.59988 -38.96504 -37.44047 -35.41266 -34.78906 -33.66353 -32.11121 -30.91271 -29.08405 -27.93685 -26.40369 -25.04294 -23.21884 -21.97301 -21.51951 -20.92584 -20.54438 -18.99402 -18.50825 -18.15166 -17.43344 -17.26841 -16.64188 -16.20094 -15.85355 -15.59433 -15.53286 -14.98896 -14.80010 -14.57345 -14.45238 -13.84897 -13.82110 -13.61502 -13.52525 -13.20314 -12.87727 -12.83548 -12.77693 -12.43149 -12.24953 -12.06525 -12.00954 -11.88535 -11.82696 -11.66211 -11.57297 -10.85066 -10.76836 -10.67978 -10.11084 -9.98634 -8.84345 -7.85242 -5.17886 1.46367 1.47831 1.56219 1.62451 1.68873 2.28664 2.41159 2.49782 3.33528 3.50750 3.58023 3.69511 3.72490 3.82431 3.87059 4.09690 4.21058 4.30471 4.35276 4.43792 4.47698 4.54310 4.67157 4.70444 4.76751 4.79191 4.91347 4.98701 5.04117 5.06156 5.08386 5.23927 5.25985 5.46551 5.62654 5.70802 5.79776 5.87886 6.21494 6.29708 6.66489 7.13473 7.24512 7.32652 7.78454 8.43181 9.24880 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.004435 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.189114 B = 6312.244680 C = 7468.663132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.619 5.619 10 C 0.183 3.817 11 C -0.133 4.133 12 C 0.140 3.860 13 H 0.099 0.901 14 N -0.699 5.699 15 C 0.511 3.489 16 O -0.587 6.587 17 C -0.096 4.096 18 H 0.141 0.859 19 C -0.135 4.135 20 C 0.113 3.887 21 N -0.717 5.717 22 C 0.510 3.490 23 O -0.611 6.611 24 C -0.127 4.127 25 C -0.087 4.087 26 C 0.122 3.878 27 H 0.248 0.752 28 H 0.028 0.972 29 H 0.004 0.996 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.410 0.590 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.402 0.598 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.039 0.961 41 H 0.086 0.914 42 H 0.025 0.975 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 -8.270 -13.722 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.345 5.345 10 C 0.058 3.942 11 C -0.172 4.172 12 C 0.034 3.966 13 H 0.117 0.883 14 N -0.349 5.349 15 C 0.299 3.701 16 O -0.467 6.467 17 C -0.116 4.116 18 H 0.158 0.842 19 C -0.174 4.174 20 C -0.010 4.010 21 N -0.367 5.367 22 C 0.299 3.701 23 O -0.494 6.494 24 C -0.167 4.167 25 C -0.126 4.126 26 C -0.004 4.004 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.022 0.978 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.246 0.754 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.238 0.762 38 H 0.120 0.880 39 H 0.148 0.852 40 H 0.058 0.942 41 H 0.105 0.895 42 H 0.043 0.957 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.445 -8.993 -13.552 16.626 hybrid contribution 0.874 1.826 0.492 2.083 sum -2.570 -7.168 -13.060 15.118 Atomic orbital electron populations 1.70141 1.05822 1.25256 1.57779 1.25431 0.96476 1.00164 1.02421 0.85219 0.77619 0.79950 0.77470 1.20961 1.22129 1.20358 1.19288 0.91174 0.84044 1.42654 0.91319 1.44677 1.02527 1.01366 1.85960 1.20976 0.83320 0.91618 0.98241 1.23066 0.96393 0.95992 1.01735 1.21981 0.95619 0.98735 0.80261 0.88269 1.45831 1.48242 1.33918 1.06911 1.21271 0.77688 0.80775 0.90371 1.90667 1.44976 1.33886 1.77219 1.21065 1.04103 0.96563 0.89915 0.84157 1.21859 1.02399 0.94329 0.98823 1.22014 0.86257 1.03408 0.89287 1.46080 1.24813 1.07136 1.58674 1.21164 0.86708 0.85212 0.77064 1.90722 1.30194 1.82940 1.45504 1.21977 1.00949 0.97951 0.95785 1.20933 0.98952 0.99875 0.92831 1.22123 0.95405 0.86246 0.96654 0.94239 0.95425 0.97757 0.89670 0.88450 0.75387 0.89253 0.93232 0.86736 0.86954 0.76231 0.88045 0.85222 0.94212 0.89517 0.95657 0.95778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.74 10.36 21.65 0.22 -52.51 16 2 C -0.05 -2.75 5.48 84.86 0.46 -2.29 16 3 Si 0.97 43.97 29.56 68.60 2.03 46.00 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.24 -13.16 10.26 84.03 0.86 -12.30 16 8 H 0.07 3.72 7.84 -2.91 -0.02 3.70 16 9 N -0.62 -29.96 3.40 -691.00 -2.35 -32.31 16 10 C 0.18 8.07 5.37 86.73 0.47 8.54 16 11 C -0.13 -4.15 6.53 31.79 0.21 -3.95 16 12 C 0.14 4.51 3.46 46.56 0.16 4.67 16 13 H 0.10 3.10 7.54 -2.39 -0.02 3.08 16 14 N -0.70 -19.17 4.99 -435.17 -2.17 -21.34 16 15 C 0.51 13.81 7.14 87.66 0.63 14.43 16 16 O -0.59 -20.68 15.39 -3.02 -0.05 -20.73 16 17 C -0.10 -1.67 2.05 -12.34 -0.03 -1.69 16 18 H 0.14 1.32 7.87 -2.39 -0.02 1.30 16 19 C -0.14 -2.29 4.94 30.20 0.15 -2.14 16 20 C 0.11 1.19 6.47 86.26 0.56 1.74 16 21 N -0.72 -11.75 5.27 -462.52 -2.44 -14.19 16 22 C 0.51 11.30 7.06 88.11 0.62 11.93 16 23 O -0.61 -19.82 17.92 -3.03 -0.05 -19.88 16 24 C -0.13 -1.94 5.56 30.10 0.17 -1.77 16 25 C -0.09 -1.71 4.31 30.22 0.13 -1.58 16 26 C 0.12 5.03 6.95 87.02 0.60 5.63 16 27 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 28 H 0.03 1.31 7.30 -2.38 -0.02 1.29 16 29 H 0.00 0.21 7.61 -2.38 -0.02 0.20 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.41 10.10 7.66 -92.71 -0.71 9.39 16 33 H 0.09 1.58 6.96 -2.39 -0.02 1.56 16 34 H 0.05 1.15 8.05 -2.39 -0.02 1.13 16 35 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.11 0.54 6.71 -2.38 -0.02 0.52 16 37 H 0.40 6.38 8.91 -92.71 -0.83 5.56 16 38 H 0.10 1.57 8.13 -2.39 -0.02 1.55 16 39 H 0.13 0.97 6.78 -2.39 -0.02 0.95 16 40 H 0.04 1.04 7.86 -2.39 -0.02 1.02 16 41 H 0.09 1.74 7.75 -2.39 -0.02 1.72 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -76.08 339.80 -0.31 -76.39 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.50 Total: 17.35 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 4.99 Total: 21.22 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -6.73 Total: -120.35 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.10 Total: -40.61 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -76.08 -0.31 -76.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015404658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.669 kcal (2) G-P(sol) polarization free energy of solvation -76.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds