Wall clock time and date at job start Tue Mar 31 2020 03:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.73121 * 2 1 4 4 O 1.21281 * 120.00279 * 113.81800 * 3 2 1 5 5 N 1.34777 * 120.00222 * 293.81427 * 3 2 1 6 6 C 1.46502 * 120.00452 * 180.02562 * 5 3 2 7 7 H 1.08995 * 110.63536 * 323.31242 * 6 5 3 8 8 C 1.55156 * 110.71803 * 199.97732 * 6 5 3 9 9 C 1.54911 * 101.58271 * 277.13275 * 8 6 5 10 10 N 1.47424 * 104.83030 * 322.99639 * 9 8 6 11 11 C 1.36941 * 125.64366 * 204.08907 * 10 9 8 12 12 H 1.07995 * 120.00059 * 163.85497 * 11 10 9 13 13 C 1.38812 * 119.99987 * 343.85418 * 11 10 9 14 14 N 1.31619 * 120.00070 * 351.06867 * 13 11 10 15 15 Si 1.86803 * 119.99881 * 171.06824 * 13 11 10 16 16 H 1.48502 * 109.47062 * 84.97338 * 15 13 11 17 17 H 1.48497 * 109.47234 * 204.97477 * 15 13 11 18 18 H 1.48498 * 109.46899 * 324.97434 * 15 13 11 19 19 C 1.47013 * 108.70638 * 24.12578 * 10 9 8 20 20 C 1.53340 * 109.60319 * 239.59342 * 2 1 3 21 21 C 1.53074 * 108.42298 * 172.71277 * 20 2 1 22 22 C 1.50179 * 109.89445 * 48.89769 * 21 20 2 23 23 O 1.21273 * 118.25124 * 162.41524 * 22 21 20 24 24 N 1.33354 * 123.50389 * 342.70063 * 22 21 20 25 25 C 1.45737 * 124.12246 * 1.65028 * 24 22 21 26 26 H 1.09003 * 109.46607 * 180.40902 * 1 2 3 27 27 H 1.08990 * 109.47299 * 300.40737 * 1 2 3 28 28 H 1.09000 * 109.46909 * 60.41454 * 1 2 3 29 29 H 0.97004 * 119.99533 * 0.02562 * 5 3 2 30 30 H 1.09000 * 111.00874 * 35.21485 * 8 6 5 31 31 H 1.09000 * 110.99971 * 159.06385 * 8 6 5 32 32 H 1.08994 * 110.36816 * 204.15296 * 9 8 6 33 33 H 1.08999 * 110.36120 * 81.83111 * 9 8 6 34 34 H 0.97008 * 119.99837 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.88528 * 239.52416 * 19 10 9 36 36 H 1.09004 * 109.88530 * 118.35571 * 19 10 9 37 37 H 1.08991 * 109.68060 * 52.97850 * 20 2 1 38 38 H 1.08997 * 109.67380 * 292.43970 * 20 2 1 39 39 H 1.09004 * 109.39993 * 288.77185 * 21 20 2 40 40 H 1.08998 * 109.33109 * 168.97980 * 21 20 2 41 41 H 0.97003 * 117.94676 * 181.91955 * 24 22 21 42 42 H 1.08997 * 109.44499 * 220.98950 * 25 24 22 43 43 H 1.08995 * 108.92949 * 101.54190 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0388 1.4185 0.0000 4 8 2.6428 1.8461 0.9608 5 7 1.8227 2.2120 -1.0678 6 6 2.3178 3.5908 -1.0681 7 1 2.2340 4.0292 -0.0737 8 6 1.5578 4.4467 -2.1155 9 6 2.3252 4.1005 -3.4159 10 7 3.7343 3.9761 -3.0008 11 6 4.8234 4.1391 -3.8147 12 1 5.8025 4.2869 -3.3835 13 6 4.6690 4.1145 -5.1940 14 7 3.5157 3.7614 -5.7209 15 14 6.0981 4.5824 -6.3023 16 1 6.9645 3.3962 -6.5202 17 1 5.5761 5.0607 -7.6076 18 1 6.8896 5.6622 -5.6600 19 6 3.7765 3.6471 -1.5685 20 6 2.0445 -0.7311 -1.2458 21 6 3.5639 -0.5583 -1.3153 22 6 4.1769 -0.8865 0.0158 23 8 5.3667 -1.1175 0.0586 24 7 3.4819 -0.9430 1.1525 25 6 2.0431 -0.7291 1.2425 26 1 -0.3633 -1.0277 0.0073 27 1 -0.3633 0.5201 0.8862 28 1 -0.3633 0.5074 -0.8937 29 1 1.3394 1.8700 -1.8362 30 1 0.5135 4.1423 -2.1853 31 1 1.6389 5.5089 -1.8851 32 1 2.2143 4.9017 -4.1466 33 1 1.9665 3.1575 -3.8283 34 1 3.4079 3.7438 -6.6848 35 1 4.3247 4.4181 -1.0270 36 1 4.2554 2.6785 -1.4246 37 1 1.5856 -0.3044 -2.1376 38 1 1.7986 -1.7908 -1.1772 39 1 3.7993 0.4731 -1.5778 40 1 3.9687 -1.2268 -2.0750 41 1 3.9648 -1.1349 1.9716 42 1 1.8194 -0.1336 2.1276 43 1 1.5463 -1.6958 1.3237 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015593053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:33 Heat of formation + Delta-G solvation = -82.449967 kcal Electronic energy + Delta-G solvation = -25571.071675 eV Core-core repulsion = 22036.177115 eV Total energy + Delta-G solvation = -3534.894560 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.19192 -40.44708 -39.04971 -37.40207 -35.59756 -34.60348 -33.35703 -32.37412 -30.92075 -29.06357 -27.18173 -26.53571 -25.28829 -24.46030 -22.26948 -22.07421 -21.24535 -20.00747 -18.84604 -18.28317 -17.63264 -17.19416 -17.11515 -16.79557 -16.68334 -15.99442 -15.62475 -15.51064 -15.08959 -14.76612 -14.51561 -14.38868 -14.06554 -13.78765 -13.47566 -13.44441 -13.39310 -13.07723 -12.99044 -12.78663 -12.46365 -12.30776 -12.21390 -12.16624 -11.97081 -11.89046 -11.76511 -11.66236 -10.89294 -10.69658 -10.68434 -10.09675 -10.02659 -8.82554 -7.92816 -5.27902 1.44097 1.44790 1.53534 1.54241 1.65113 2.19037 2.33041 2.47142 3.27444 3.39493 3.47466 3.61210 3.67650 3.70612 3.78472 3.99453 4.05091 4.26825 4.31992 4.38288 4.60262 4.63305 4.69962 4.71793 4.74824 4.83531 4.92044 4.97094 4.98740 5.02709 5.04358 5.12204 5.37767 5.40059 5.57775 5.59842 5.72111 5.79766 6.19416 6.27973 6.59601 7.07948 7.14715 7.27262 7.72621 8.40121 9.18937 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.005050 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.373891 B = 5543.102992 C = 6255.612431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 C 0.517 3.483 4 O -0.577 6.577 5 N -0.702 5.702 6 C 0.148 3.852 7 H 0.096 0.904 8 C -0.131 4.131 9 C 0.179 3.821 10 N -0.616 5.616 11 C -0.253 4.253 12 H 0.061 0.939 13 C -0.048 4.048 14 N -0.936 5.936 15 Si 0.969 3.031 16 H -0.287 1.287 17 H -0.285 1.285 18 H -0.276 1.276 19 C 0.127 3.873 20 C -0.103 4.103 21 C -0.145 4.145 22 C 0.516 3.484 23 O -0.617 6.617 24 N -0.702 5.702 25 C 0.128 3.872 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.410 0.590 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.027 0.973 33 H 0.017 0.983 34 H 0.251 0.749 35 H 0.019 0.981 36 H -0.001 1.001 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.402 0.598 42 H 0.089 0.911 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.680 -9.930 11.585 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C 0.304 3.696 4 O -0.457 6.457 5 N -0.352 5.352 6 C 0.042 3.958 7 H 0.114 0.886 8 C -0.169 4.169 9 C 0.055 3.945 10 N -0.343 5.343 11 C -0.382 4.382 12 H 0.079 0.921 13 C -0.243 4.243 14 N -0.583 5.583 15 Si 0.797 3.203 16 H -0.214 1.214 17 H -0.211 1.211 18 H -0.202 1.202 19 C 0.000 4.000 20 C -0.140 4.140 21 C -0.185 4.185 22 C 0.304 3.696 23 O -0.501 6.501 24 N -0.351 5.351 25 C 0.005 3.995 26 H 0.122 0.878 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.246 0.754 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.060 0.940 35 H 0.037 0.963 36 H 0.017 0.983 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.238 0.762 42 H 0.107 0.893 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.773 -9.665 11.878 20.596 hybrid contribution 1.564 0.394 -0.902 1.848 sum -12.209 -9.272 10.976 18.855 Atomic orbital electron populations 1.21806 0.87524 1.05602 1.03918 1.21282 1.00648 0.89957 0.97656 1.21050 0.78383 0.88357 0.81803 1.90688 1.42578 1.76304 1.36118 1.45891 1.57412 1.12453 1.19494 1.21672 0.91930 0.82656 0.99523 0.88619 1.23168 0.99702 0.99842 0.94234 1.21211 0.82450 0.97699 0.93154 1.44664 1.02829 1.82076 1.04693 1.19199 0.88059 1.42808 0.88165 0.92073 1.25552 0.99705 1.01328 0.97679 1.70064 1.24725 1.52975 1.10496 0.85258 0.78837 0.77924 0.78234 1.21367 1.21087 1.20172 1.21757 0.96509 0.95843 0.85867 1.21844 0.91249 1.03577 0.97365 1.21712 0.99153 1.03553 0.94079 1.20449 0.86241 0.75254 0.87638 1.90705 1.18252 1.53034 1.88077 1.45312 1.10511 1.70165 1.09108 1.21602 0.78611 1.01677 0.97618 0.87792 0.91197 0.90529 0.75378 0.87523 0.89833 0.95465 0.96526 0.93956 0.96304 0.98341 0.88473 0.86441 0.91091 0.87659 0.76238 0.89268 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 8.46 71.98 0.61 -0.51 16 2 C -0.09 -1.53 0.66 -52.84 -0.03 -1.56 16 3 C 0.52 13.84 4.74 87.66 0.42 14.26 16 4 O -0.58 -20.16 15.33 -3.03 -0.05 -20.21 16 5 N -0.70 -19.23 4.85 -436.93 -2.12 -21.35 16 6 C 0.15 4.93 3.25 46.18 0.15 5.08 16 7 H 0.10 3.10 7.69 -2.39 -0.02 3.08 16 8 C -0.13 -4.14 6.64 31.99 0.21 -3.93 16 9 C 0.18 8.04 5.34 86.86 0.46 8.51 16 10 N -0.62 -31.66 3.39 -692.02 -2.35 -34.01 16 11 C -0.25 -14.61 10.21 84.03 0.86 -13.75 16 12 H 0.06 3.56 7.84 -2.91 -0.02 3.54 16 13 C -0.05 -2.71 5.39 84.86 0.46 -2.25 16 14 N -0.94 -54.11 10.93 21.65 0.24 -53.88 16 15 Si 0.97 46.15 29.56 68.60 2.03 48.18 16 16 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 17 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 C 0.13 5.67 6.98 86.73 0.61 6.27 16 20 C -0.10 -1.75 4.72 30.73 0.15 -1.60 16 21 C -0.15 -4.14 5.50 29.71 0.16 -3.98 16 22 C 0.52 16.74 7.44 87.71 0.65 17.39 16 23 O -0.62 -26.32 17.78 -3.01 -0.05 -26.37 16 24 N -0.70 -16.76 5.13 -467.36 -2.40 -19.16 16 25 C 0.13 1.98 5.40 86.50 0.47 2.45 16 26 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.08 0.62 8.05 -2.39 -0.02 0.60 16 29 H 0.41 9.71 7.79 -92.71 -0.72 8.98 16 30 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.03 1.38 7.35 -2.39 -0.02 1.36 16 33 H 0.02 0.79 7.94 -2.39 -0.02 0.77 16 34 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.00 -0.07 7.51 -2.39 -0.02 -0.09 16 37 H 0.10 1.49 7.54 -2.39 -0.02 1.47 16 38 H 0.12 1.27 8.13 -2.39 -0.02 1.25 16 39 H 0.07 2.60 6.80 -2.38 -0.02 2.59 16 40 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.40 9.07 8.80 -92.71 -0.82 8.26 16 42 H 0.09 1.41 7.71 -2.39 -0.02 1.39 16 43 H 0.12 0.87 8.12 -2.39 -0.02 0.85 16 Total: -1.00 -80.85 341.44 -0.04 -80.89 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -0.51 Total: 19.52 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 5.17 Total: 26.38 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -6.63 Total: -128.39 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -0.10 Total: -46.58 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -80.85 -0.04 -80.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015593053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.555 kcal (2) G-P(sol) polarization free energy of solvation -80.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds