Wall clock time and date at job start Tue Mar 31 2020 03:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99878 * 2 1 4 4 H 1.48499 * 109.47237 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46936 * 119.99797 * 3 2 1 6 6 H 1.48499 * 109.46744 * 239.99407 * 3 2 1 7 7 C 1.38810 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99873 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00254 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85112 * 336.19441 * 10 9 7 12 12 C 1.53784 * 113.61755 * 107.49925 * 10 9 7 13 13 C 1.53774 * 87.08052 * 89.11737 * 12 10 9 14 14 H 1.09004 * 113.69538 * 270.87140 * 13 12 10 15 15 N 1.46503 * 113.61521 * 139.98448 * 13 12 10 16 16 C 1.34777 * 119.99973 * 107.50232 * 15 13 12 17 17 O 1.21276 * 120.00003 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99531 * 179.97438 * 16 15 13 19 19 H 1.09000 * 109.60514 * 264.42416 * 18 16 15 20 20 C 1.52988 * 109.60348 * 144.09629 * 18 16 15 21 21 C 1.51783 * 110.87615 * 326.70829 * 20 18 16 22 22 C 1.51789 * 113.81186 * 292.99666 * 21 20 18 23 23 C 1.53061 * 110.74358 * 66.81987 * 22 21 20 24 24 C 1.51426 * 108.48991 * 275.07807 * 23 22 21 25 25 O 1.21286 * 119.89472 * 251.24223 * 24 23 22 26 26 N 1.33374 * 120.21571 * 71.22138 * 24 23 22 27 27 C 1.53783 * 113.61602 * 204.99903 * 10 9 7 28 28 H 0.96995 * 120.00423 * 179.97438 * 1 2 3 29 29 H 0.97005 * 119.99691 * 359.97438 * 9 7 2 30 30 H 1.09002 * 113.61625 * 203.66841 * 12 10 9 31 31 H 1.08994 * 113.61255 * 334.56767 * 12 10 9 32 32 H 0.97005 * 119.99895 * 287.50210 * 15 13 12 33 33 H 1.09002 * 109.19609 * 87.06066 * 20 18 16 34 34 H 1.09000 * 109.20243 * 206.34597 * 20 18 16 35 35 H 1.08994 * 108.61803 * 54.12387 * 21 20 18 36 36 H 1.09007 * 108.61245 * 172.02105 * 21 20 18 37 37 H 1.08998 * 109.22353 * 187.14053 * 22 21 20 38 38 H 1.08999 * 109.22352 * 306.53570 * 22 21 20 39 39 H 1.09000 * 109.63798 * 34.77627 * 23 22 21 40 40 H 1.09001 * 109.63228 * 155.38190 * 23 22 21 41 41 H 0.96995 * 119.78323 * 180.31948 * 26 24 23 42 42 H 1.09001 * 113.61216 * 25.42642 * 27 10 9 43 43 H 1.08999 * 113.61798 * 156.25198 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6963 -1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0017 11 1 3.0659 -3.5640 -0.4030 12 6 1.9981 -4.4015 1.3458 13 6 0.7199 -5.0787 0.8240 14 1 -0.1919 -4.5246 1.0474 15 7 0.6230 -6.4980 1.1736 16 6 -0.2570 -6.9026 2.1109 17 8 -0.9690 -6.0918 2.6644 18 6 -0.3570 -8.3628 2.4701 19 1 -1.1632 -8.8252 1.9007 20 6 -0.6387 -8.5050 3.9671 21 6 0.0325 -7.3926 4.7518 22 6 1.5488 -7.4602 4.7359 23 6 2.0885 -7.1972 3.3279 24 6 2.0736 -8.5003 2.5568 25 8 3.1174 -9.0600 2.2953 26 7 0.9164 -9.0349 2.1645 27 6 1.2605 -4.8290 -0.5939 28 1 -0.4850 -0.8400 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 2.8269 -5.0927 1.4994 31 1 1.8277 -3.7469 2.2004 32 1 1.1922 -7.1466 0.7306 33 1 -1.7149 -8.4629 4.1348 34 1 -0.2602 -9.4667 4.3133 35 1 -0.2776 -6.4353 4.3331 36 1 -0.3052 -7.4444 5.7870 37 1 1.9487 -6.7109 5.4191 38 1 1.8674 -8.4501 5.0626 39 1 1.4562 -6.4662 2.8239 40 1 3.1095 -6.8209 3.3914 41 1 0.9139 -9.8723 1.6749 42 1 0.4947 -4.5194 -1.3050 43 1 1.8876 -5.6364 -0.9719 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020573467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:59 Heat of formation + Delta-G solvation = -19.502464 kcal Electronic energy + Delta-G solvation = -25232.522430 eV Core-core repulsion = 21700.357479 eV Total energy + Delta-G solvation = -3532.164951 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.83179 -39.34742 -38.40660 -36.31131 -34.71783 -34.16759 -32.92301 -31.23893 -29.52302 -27.37604 -25.32741 -24.90576 -24.07415 -23.12508 -21.68663 -20.49517 -19.96834 -18.88680 -18.05574 -17.65875 -17.54190 -16.30500 -16.02339 -15.55049 -15.18156 -14.99654 -14.37961 -14.30281 -14.00013 -13.93072 -13.67912 -13.50316 -12.96406 -12.93243 -12.78772 -12.26013 -12.16348 -11.81962 -11.63395 -11.27952 -11.04270 -10.81871 -10.79845 -10.65412 -10.36707 -10.10062 -10.02462 -9.98432 -9.96260 -9.39485 -9.20995 -8.95838 -8.80152 -7.11774 -6.14939 -3.16510 2.25834 2.32835 2.84262 3.03369 3.50789 3.54055 3.71647 4.20395 4.24346 4.40769 4.56615 4.62006 4.70432 4.85782 4.92149 4.99694 5.05510 5.21679 5.26451 5.40347 5.41885 5.48884 5.69429 5.71954 5.75002 5.78189 5.89168 5.92205 5.95590 5.99190 6.16577 6.29858 6.39429 6.43253 6.54749 6.59629 6.77932 6.85739 7.33810 7.77920 7.90439 7.98450 8.70203 9.15565 10.01892 10.15127 11.32785 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.003756 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.099611 B = 7452.425376 C = 7634.990312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.041 4.041 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.338 4.338 8 H 0.067 0.933 9 N -0.716 5.716 10 C 0.178 3.822 11 H 0.071 0.929 12 C -0.185 4.185 13 C 0.120 3.880 14 H 0.115 0.885 15 N -0.718 5.718 16 C 0.508 3.492 17 O -0.518 6.518 18 C 0.121 3.879 19 H 0.126 0.874 20 C -0.115 4.115 21 C -0.157 4.157 22 C -0.108 4.108 23 C -0.183 4.183 24 C 0.522 3.478 25 O -0.544 6.544 26 N -0.724 5.724 27 C -0.165 4.165 28 H 0.255 0.745 29 H 0.369 0.631 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.399 0.601 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.404 0.596 42 H 0.072 0.928 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 -20.550 5.829 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.239 4.239 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.468 4.468 8 H 0.085 0.915 9 N -0.355 5.355 10 C 0.065 3.935 11 H 0.089 0.911 12 C -0.227 4.227 13 C 0.017 3.983 14 H 0.133 0.867 15 N -0.370 5.370 16 C 0.294 3.706 17 O -0.394 6.394 18 C 0.013 3.987 19 H 0.144 0.856 20 C -0.154 4.154 21 C -0.194 4.194 22 C -0.146 4.146 23 C -0.224 4.224 24 C 0.309 3.691 25 O -0.421 6.421 26 N -0.380 5.380 27 C -0.205 4.205 28 H 0.067 0.933 29 H 0.202 0.798 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.234 0.766 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.241 0.759 42 H 0.091 0.909 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.672 -18.312 6.178 19.337 hybrid contribution 0.112 -2.587 -0.349 2.613 sum -0.560 -20.899 5.829 21.704 Atomic orbital electron populations 1.70889 1.06071 1.28503 1.53018 1.25813 0.97002 1.01083 1.00026 0.83236 0.74232 0.75506 0.75915 1.20999 1.22164 1.22190 1.20068 0.92137 0.85542 1.49088 0.91486 1.42188 1.04740 1.00364 1.88232 1.20824 0.95341 0.84903 0.92480 0.91125 1.24352 0.96091 0.99783 1.02511 1.22754 0.99951 0.79169 0.96445 0.86707 1.46555 1.39662 1.10408 1.40330 1.20468 0.79876 0.90471 0.79753 1.90711 1.42967 1.54330 1.51344 1.21640 0.87339 0.90690 0.99036 0.85608 1.21559 1.02261 1.00059 0.91510 1.21654 0.94572 1.01942 1.01229 1.21175 0.95924 1.02338 0.95166 1.22938 1.06133 0.95998 0.97289 1.20764 0.82828 0.87268 0.78210 1.90763 1.31525 1.63605 1.56192 1.46042 1.05782 1.27071 1.59121 1.23917 1.00796 1.00187 0.95618 0.93348 0.79753 0.90881 0.90784 0.76595 0.89632 0.90558 0.87910 0.91453 0.90485 0.92154 0.85589 0.88375 0.75884 0.90881 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.83 13.70 55.49 0.76 -28.07 16 2 C -0.04 -1.19 5.50 -17.43 -0.10 -1.28 16 3 Si 1.08 25.65 29.92 -169.99 -5.09 20.56 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.34 -9.33 9.97 -15.06 -0.15 -9.48 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.42 5.31 -52.64 -0.28 -17.70 16 10 C 0.18 3.40 4.56 -67.12 -0.31 3.09 16 11 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 12 C -0.18 -3.08 6.83 -25.92 -0.18 -3.26 16 13 C 0.12 1.82 4.01 -67.12 -0.27 1.55 16 14 H 0.12 2.05 7.46 -51.93 -0.39 1.66 16 15 N -0.72 -8.53 3.41 -53.02 -0.18 -8.71 16 16 C 0.51 6.00 4.18 -10.98 -0.05 5.95 16 17 O -0.52 -7.94 13.68 5.56 0.08 -7.87 16 18 C 0.12 0.96 3.80 -68.71 -0.26 0.70 16 19 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 20 C -0.12 -0.90 5.34 -27.35 -0.15 -1.05 16 21 C -0.16 -1.55 5.16 -27.96 -0.14 -1.70 16 22 C -0.11 -1.10 5.67 -27.31 -0.15 -1.25 16 23 C -0.18 -2.12 5.27 -27.49 -0.15 -2.27 16 24 C 0.52 6.02 5.60 -11.25 -0.06 5.96 16 25 O -0.54 -8.27 17.92 5.55 0.10 -8.17 16 26 N -0.72 -5.86 4.59 -54.57 -0.25 -6.11 16 27 C -0.17 -2.51 7.58 -25.92 -0.20 -2.71 16 28 H 0.26 7.72 6.77 -40.82 -0.28 7.44 16 29 H 0.37 9.30 6.73 -40.82 -0.27 9.03 16 30 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 31 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.40 4.19 6.96 -40.82 -0.28 3.91 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 35 H 0.10 1.32 4.76 -51.93 -0.25 1.07 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.59 7.86 -51.93 -0.41 0.18 16 39 H 0.13 1.58 2.31 -51.93 -0.12 1.46 16 40 H 0.10 1.18 8.13 -51.93 -0.42 0.76 16 41 H 0.40 2.50 8.91 -40.82 -0.36 2.13 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -33.60 332.20 -8.21 -41.81 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -6.21 Total: 14.98 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.15 Total: -5.74 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.05 Total: -60.58 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.18 Total: -16.04 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.09 Total: 20.56 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.60 -8.21 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020573467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.310 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds